Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Forward (+)

66398332 .. 66400329

Gene Structure 1998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTCCTGGGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAAACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGATACATGGACCTGATTGTGAAGTATTACTCTTTGTATAACACATTAGCCAAGCTCCTCTTCATCGGAACTTCTTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATCAAGATACTTTCAGACACTACTATCTGATCCTTGTTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTGTTGTGGACATTTTCAATATACCTTGAAGCTGTTGCAATCTTACCGCAATTGGTACTACTTCAAAGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGGTATGTCGACCTAACTCCTCTTTGGCAAAGAGCCATTTGCTTTTGTTCTATTTGCTTTCTTGGATTGGATTACCAGGAACTTTGTTACACCTCGTTAGGATCAAATGGGACTGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

197

Amino Acids

22.76

Weight (kDa)

8.68

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	28 - 160	4.8e-49	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AccB7I	CCANNNNNTGG	2 cut(s)	40, 225
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	3 cut(s)	279, 295, 580
AfaI	GTAC	3 cut(s)	230, 239, 414
AfiI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	356, 375, 386, 422, 429
AjnI	CCWGG	3 cut(s)	39, 224, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	2 cut(s)	193, 389
AluI	AGCT	2 cut(s)	193, 389
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	279, 295, 580
AoxI	GGCC	1 cut(s)	222
Asp718I	GGTACC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	3 cut(s)	41, 226, 548
BcoDI	GTCTC	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	62
Bme1390I	CCNGG	3 cut(s)	41, 226, 548
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	41, 226, 548
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	40, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 145, 225
Bse1I	ACTGG	3 cut(s)	54, 454, 589
BseBI	CCWGG	3 cut(s)	41, 226, 548
BseDI	CCNNGG	2 cut(s)	40, 219
BseLI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
BseNI	ACTGG	3 cut(s)	54, 454, 589
BseRI	GAGGAG	2 cut(s)	185, 480
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	271, 300, 572
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	3 cut(s)	279, 295, 580
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	54, 454, 589
BssECI	CCNNGG	2 cut(s)	40, 219
BssMI	GATC	3 cut(s)	271, 300, 572
Bst2UI	CCWGG	3 cut(s)	41, 226, 548
Bst4CI	ACNGT	2 cut(s)	117, 349
Bst6I	CTCTTC	2 cut(s)	203, 330
BstAFI	CTTAAG	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	274, 303, 575
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	271, 300, 572
BstNI	CCWGG	3 cut(s)	41, 226, 548
BstSCI	CCNGG	3 cut(s)	39, 224, 546
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	229, 238, 413
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	4 cut(s)	28, 145, 232, 338
CviJI	RGCY	6 cut(s)	188, 193, 224, 323, 389, 506
CviKI_1	RGCY	6 cut(s)	188, 193, 224, 323, 389, 506
CviQI	GTAC	3 cut(s)	229, 238, 413
DpnI	GATC	3 cut(s)	273, 302, 574
DpnII	GATC	3 cut(s)	271, 300, 572
Eam1104I	CTCTTC	2 cut(s)	203, 330
EarI	CTCTTC	2 cut(s)	203, 330
Eco47I	GGWCC	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	39, 224, 546
FaeI	CATG	4 cut(s)	31, 148, 235, 341
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	4 cut(s)	27, 144, 231, 337
FblI	GTMKAC	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	31, 148, 235, 341
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	4, 67, 331
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	366, 481
Hpy188I	TCNGA	4 cut(s)	206, 287, 300, 330
Hpy188III	TCNNGA	3 cut(s)	110, 275, 429
Hpy8I	GTNNAC	2 cut(s)	366, 481
HpyCH4III	ACNGT	2 cut(s)	117, 349
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	89, 395
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	31, 148, 235, 341
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	271, 300, 572
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	3 cut(s)	273, 302, 574
MboI	GATC	3 cut(s)	271, 300, 572
MboII	GAAGA	3 cut(s)	190, 317, 458
MfeI	CAATTG	1 cut(s)	407
MluCI	AATT	2 cut(s)	351, 407
MnlI	CCTC	6 cut(s)	47, 110, 206, 228, 501, 574
MseI	TTAA	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	41, 226, 548
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	3 cut(s)	41, 226, 548
NdeII	GATC	3 cut(s)	271, 300, 572
NlaIII	CATG	4 cut(s)	31, 148, 235, 341
NlaIV	GGNNCC	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	4, 67, 331
PflMI	CCANNNNNTGG	2 cut(s)	40, 225
Psp6I	CCWGG	3 cut(s)	39, 224, 546
PspGI	CCWGG	3 cut(s)	39, 224, 546
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	3 cut(s)	230, 239, 414
RsaNI	GTAC	3 cut(s)	229, 238, 413
SalI	GTCGAC	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	271, 300, 572
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	41, 226, 548
SinI	GGWCC	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	62, 108
SmoI	CTYRAG	2 cut(s)	62, 108
Sse9I	AATT	2 cut(s)	351, 407
SsiI	CCGC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	39, 224, 546
TaaI	ACNGT	2 cut(s)	117, 349
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	480
TasI	AATT	2 cut(s)	351, 407
TfiI	GAWTC	3 cut(s)	4, 67, 331
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	17, 190
Van91I	CCANNNNNTGG	2 cut(s)	40, 225
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.