Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

45558738 .. 45561996

Gene Structure 3259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAATATATTCAGATTAGCGGGTGACATGACCCATCTTGCCAGCGTCCTCGTCTTGCTCCTCAAGATCCATACCATCAAATCCTGTGCAGGTGTTTCTTTGAAGACTCAAGAACTCTATGCCCTTGTTTTTGTTACTCGCTACTTGGACATTTTCACCGATTTCATATCTTTATATAACACCGTCATGAAGCTAATATTCTTGGGGAGTTCTTTTTCAATTGTTTGGTACATTAGGCAGCACAGGATTGTTCGCAGGTCCTATGATAGAGACCAAGACACCTTCCGCCATCATTTCCTACTGGCACCATGTCTAGTTTTGGCCCTAATTTTCAATGAGAAGTTCACTTTCAAGGAGGTCATGTGGTCGTTTTCATTATTTTTAGAAGCTGTTGCTATCCTTCCTCAGCTTGTGCTGTTACAGAGAACGAGAAATATTGACAACTTGACAGGGCAATACGTCTTCCTCCTTGGGTATTCCAAAAACCCTGATATTTTCTTTACAAATACAATTCTATATCATATTTTTGGTTCCTTCATTAGACCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

183

Amino Acids

21.46

Weight (kDa)

9.48

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	28 - 162	5.7e-53	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	2 cut(s)	80, 246
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	2 cut(s)	20, 286
AclWI	GGATC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	103, 219, 334, 352
AluBI	AGCT	3 cut(s)	193, 389, 409
AluI	AGCT	3 cut(s)	193, 389, 409
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	258, 322
AsuHPI	GGTGA	2 cut(s)	35, 148
AvaII	GGWCC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	110, 454
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	3 cut(s)	42, 83, 297
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	314
BfuAI	ACCTGC	2 cut(s)	80, 246
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	258, 322
BmiI	GGNNCC	2 cut(s)	306, 532
BpiI	GAAGAC	2 cut(s)	110, 454
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	47, 93
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	20, 286
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	306, 532
BspMI	ACCTGC	2 cut(s)	80, 246
BspPI	GGATC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	405
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	2 cut(s)	110, 454
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	323
BveI	ACCTGC	2 cut(s)	80, 246
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	258, 322
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	4 cut(s)	28, 187, 309, 361
CviJI	RGCY	4 cut(s)	193, 323, 389, 409
CviKI_1	RGCY	4 cut(s)	193, 323, 389, 409
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	4 cut(s)	31, 190, 312, 364
FatI	CATG	4 cut(s)	27, 186, 308, 360
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	31, 190, 312, 364
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	35, 148
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	64, 110, 187
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	3 cut(s)	292, 410, 544
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	31, 190, 312, 364
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	8 cut(s)	55, 75, 97, 229, 241, 287, 435, 501
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	3 cut(s)	23, 133, 417
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	115, 454
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	66
MluCI	AATT	3 cut(s)	219, 327, 510
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	59, 71, 349, 414, 476
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	219
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	31, 190, 312, 364
NlaIV	GGNNCC	2 cut(s)	306, 532
NmuCI	GTSAC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	306, 532
PspPI	GGNCC	2 cut(s)	258, 322
PspPPI	RGGWCCY	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	2 cut(s)	258, 322
SchI	GAGTC	1 cut(s)	100
SetI	ASST	9 cut(s)	94, 195, 260, 284, 360, 391, 411, 462, 547
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	62, 108
SmoI	CTYRAG	2 cut(s)	62, 108
Sse9I	AATT	3 cut(s)	219, 327, 510
SsiI	CCGC	2 cut(s)	20, 286
SspI	AATATT	2 cut(s)	198, 436
SspMI	CTAG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	462
TasI	AATT	3 cut(s)	219, 327, 510
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	5 cut(s)	17, 154, 203, 363, 526
VpaK11BI	GGWCC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.