Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

1595069 .. 1597610

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAACCAGGTCATGCGGTCATTTTCATTATTTTTAGAAGCTGTTGCTATCCTTCCTCAGCTTGTGCTGTTACAGAGAACGAGAAATATTGACAACTTGACAGGGCAATACGTCTTCCTCCTTGGGTATTCCAAACACCCTGATATTTTCTTTACAAATACAATTCTATATCATATTTTTGGTTCCTTCATTAGACCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

67

Amino Acids

7.83

Weight (kDa)

9.52

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	2 - 49	1.2e-14	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	41, 61
AluI	AGCT	2 cut(s)	41, 61
BbsI	GAAGAC	1 cut(s)	106
BbvCI	CCTCAGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	71
BspACI	CCGC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	106
CsiI	ACCWGGT	1 cut(s)	6
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	2 cut(s)	41, 61
CviKI_1	RGCY	2 cut(s)	41, 61
DdeI	CTNAG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	16
FaiI	YATR	5 cut(s)	14, 169, 174, 200, 202
FatI	CATG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	62, 196
HpyCH4IV	ACGT	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	20, 87, 153
MabI	ACCWGGT	1 cut(s)	6
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	106
MluCI	AATT	1 cut(s)	162
MnlI	CCTC	2 cut(s)	66, 128
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	5 cut(s)	12, 43, 63, 114, 199
SexAI	ACCWGGT	1 cut(s)	6
SgeI	CNNG	9 cut(s)	19, 20, 25, 74, 93, 109, 114, 134, 152
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	16
SspI	AATATT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	114
TasI	AATT	1 cut(s)	162
TspDTI	ATGAA	3 cut(s)	15, 17, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.