Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

19447737 .. 19450274

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATATATTCAGATTAGCGGGCGACATGACCCACCTGGCCAGCGTCCTCGTCTTGCTCCTCAAGATCCACACTATCAAATCGTGCGCCGGTATTTCTTTGAAGACTGAAGAACTCTATGCCATTGTTTTTGCTACTCGCTACCTGGACATTTTCACCGACTTTATATCTCTGTATAATACCTTCATGAAGTTGATATTTTTGGGGAGCTCATTTTCAATTGTTTGGTACATTAGGGAGCACAAGATTGTTCGCAGATCTTATGATAAAGACCAAGACACCTTCCGCCATGTGTTTCTTTTGCTGCCATGTGTGTTCTTAGCCCTAATAATCAATGAGAAATTCACCGTCAAGGAGGTCTTGTGGACATTTTCGTTATATTTAGAAGCTGTTGCTATACTTCCTCAGCTTGTGCTGTTGCAGAGAACAAGAAACATTGACAATTTGACAGGCCAATATGTGTTACTTCTTGGTGCATACCGAGCTTTATACATTCTCAACTGGATTTACCGCTACTTTACTGAACCACACTATGTTCATTGGATACCGTGGATTTCCGGGCTTGTTCAAACACTGCTGTATGCCGACTTCTTCTACTATTATTTCCACAGCTGGAAAAACAACAAAAAGCTCCAGTTACCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

216

Amino Acids

25.59

Weight (kDa)

9.21

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 286, 511
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	103, 219, 569
AjnI	CCWGG	2 cut(s)	36, 144
AluBI	AGCT	6 cut(s)	210, 389, 409, 485, 612, 631
AluI	AGCT	6 cut(s)	210, 389, 409, 485, 612, 631
Alw21I	GWGCWC	2 cut(s)	212, 243
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	39, 451
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	148, 337
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	4 cut(s)	167, 199, 572, 604
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	212, 243
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	38, 146
BciVI	GTATCC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	3 cut(s)	38, 146, 559
BmrFI	CCNGG	3 cut(s)	38, 146, 559
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	548
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	2 cut(s)	89, 640
Bse1I	ACTGG	2 cut(s)	506, 634
BseBI	CCWGG	2 cut(s)	38, 146
BseDI	CCNNGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	506, 634
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	2 cut(s)	41, 453
BsiHKAI	GWGCWC	2 cut(s)	212, 243
BsiSI	CCGG	3 cut(s)	90, 558, 641
BslI	CCNNNNNNNGG	1 cut(s)	640
BsnI	GGCC	2 cut(s)	41, 453
Bsp1286I	GDGCHC	2 cut(s)	212, 243
Bsp143I	GATC	2 cut(s)	66, 257
BspACI	CCGC	3 cut(s)	20, 286, 511
BspANI	GGCC	2 cut(s)	41, 453
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	186
BspPI	GGATC	1 cut(s)	61
BsrFI	RCCGGY	2 cut(s)	89, 640
BsrI	ACTGG	2 cut(s)	506, 634
BssAI	RCCGGY	2 cut(s)	89, 640
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	2 cut(s)	66, 257
Bst2UI	CCWGG	2 cut(s)	38, 146
Bst4CI	ACNGT	2 cut(s)	349, 549
BstC8I	GCNNGC	2 cut(s)	22, 43
BstDEI	CTNAG	2 cut(s)	319, 405
BstDSI	CCRYGG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	69, 260
BstMBI	GATC	2 cut(s)	66, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	2 cut(s)	38, 146
BstSCI	CCNGG	3 cut(s)	36, 144, 557
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	66, 257
BstYI	RGATCY	2 cut(s)	66, 257
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	41, 453
BtgI	CCRYGG	1 cut(s)	548
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	2 cut(s)	22, 43
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	89, 640
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	4 cut(s)	28, 187, 290, 309
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	319, 405
DpnI	GATC	2 cut(s)	68, 259
DpnII	GATC	2 cut(s)	66, 257
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	36, 144
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	4 cut(s)	31, 190, 293, 312
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	27, 186, 289, 308
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	305
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	41, 453
HapII	CCGG	3 cut(s)	90, 558, 641
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	31, 190, 293, 312
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HpaII	CCGG	3 cut(s)	90, 558, 641
HphI	GGTGA	2 cut(s)	148, 337
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	64, 187
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	193, 292
HpyCH4III	ACNGT	2 cut(s)	349, 549
HpyCH4V	TGCA	2 cut(s)	421, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	319, 405
Hsp92II	CATG	4 cut(s)	31, 190, 293, 312
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	66, 257
LmnI	GCTCC	4 cut(s)	63, 207, 238, 636
Lsp1109I	GCAGC	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	462, 636
MalI	GATC	2 cut(s)	68, 259
MboI	GATC	2 cut(s)	66, 257
MboII	GAAGA	3 cut(s)	115, 122, 583
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	66, 257
MhlI	GDGCHC	2 cut(s)	212, 243
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	3 cut(s)	219, 341, 442
MluNI	TGGCCA	1 cut(s)	41
MnlI	CCTC	4 cut(s)	59, 71, 349, 414
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	3 cut(s)	90, 558, 641
MspR9I	CCNGG	3 cut(s)	38, 146, 559
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	2 cut(s)	38, 146
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	2 cut(s)	66, 257
NlaIII	CATG	4 cut(s)	31, 190, 293, 312
PagI	TCATGA	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	36, 144
PspGI	CCWGG	2 cut(s)	36, 144
PsuI	RGATCY	2 cut(s)	66, 257
PvuII	CAGCTG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	66, 257
ScrFI	CCNGG	3 cut(s)	38, 146, 559
SduI	GDGCHC	2 cut(s)	212, 243
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	219, 341, 442
SsiI	CCGC	3 cut(s)	20, 286, 511
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	36, 144, 557
TaaI	ACNGT	2 cut(s)	349, 549
TasI	AATT	3 cut(s)	219, 341, 442
TscAI	CASTG	1 cut(s)	579
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	17, 175, 203, 527
TspRI	CASTG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.