Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

21166581 .. 21169315

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAACTCAGCAACAACCTGGTGGGCTTTCTCAACTTTCTCACCTTCCTCTGCTCCATCCCAATCGTCGTCGCCGGAGTATGGCTGAGCAAGCAAGGCAACACCGAGTGCGAGAAGTTTCTGGAGAAGCCGATCATCATCCTCGGCATCTTCCTTATGATCGTCTCCCTCACCGGCTTCATCGGCTCCTGTTTCCGCGTCTCCTGGCTCCTCTGGCTCTACCTCCTCGTCATGTTCCTCCTCATCGTCGTCCTCTTCGGCTACACCATCTTCGCCTTCGTAATCACCAACAAGGGCGCCGGCACCGTGCTCTCCGATAAGGGATACAAGGAGTACAAGCTCGGTGACTACTCTTACTGGCTGCAGAAGAGAGTCAACAGCACCAAGAACTGGAGCAAGATCAGGAGCTGCCTCAGTGATAGCAAGGTCTGCTCCAGCTTCCAGGACAAGTATCTCAATGATACTCTCTCCCAGTTCTATACCGAGAACTTGTCTGCGCTTCAGGCTGGCTGCTGTAAGCCATCAGATGACTGTGGTTTTGCCTATGAAAGTCCCACTGTCTGGACCAAGAATGCTACTGTTGTTTCTACCAACCCTGACTGCAATGCATGGGATAATGATCCAAAGGTTCTGTGCTTCAACTGCCAGTCATGTAAGGCTGGACTGCTTGACAATCTGAAAAGTAACTGGAAGAAGACGGCTGTTGTCAACATTGTCTTCCTTATCTTCCTCATCATCGTGTATTCCGTAGGGTGCTGTGCATTCAGGAATAACAGGAGGGACAATTATTATAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

266

Amino Acids

30.17

Weight (kDa)

8.85

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tetraspanin	PF00335	5 - 254	1.6e-38	Tetraspanin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
AccB1I	GGYRCC	2 cut(s)	296, 302
AccB7I	CCANNNNNTGG	2 cut(s)	390, 561
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	3 cut(s)	18, 203, 441
AluBI	AGCT	3 cut(s)	340, 408, 438
AluI	AGCT	3 cut(s)	340, 408, 438
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	169, 205
AlwI	GGATC	1 cut(s)	614
AlwNI	CAGNNNCTG	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	361, 408, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	2 cut(s)	299, 499
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	34, 163, 277, 356
AvaII	GGWCC	1 cut(s)	564
BanI	GGYRCC	2 cut(s)	296, 302
BbsI	GAAGAC	2 cut(s)	701, 709
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	348, 395, 497
BccI	CCATC	3 cut(s)	65, 275, 529
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	3 cut(s)	20, 205, 443
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	169, 205
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	362, 409, 511
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	3 cut(s)	363, 410, 512
Bme1390I	CCNGG	3 cut(s)	20, 205, 443
Bme18I	GGWCC	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	4 cut(s)	187, 209, 298, 304
BmrFI	CCNGG	3 cut(s)	20, 205, 443
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	701, 709
BpmI	CTGGAG	3 cut(s)	143, 412, 418
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaBI	GATNNNNATC	2 cut(s)	137, 618
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 390, 561
Bse118I	RCCGGY	2 cut(s)	173, 299
Bse1I	ACTGG	5 cut(s)	362, 395, 472, 646, 692
Bse3DI	GCAATG	1 cut(s)	610
Bse8I	GATNNNNATC	2 cut(s)	137, 618
BseBI	CCWGG	3 cut(s)	20, 205, 443
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	57, 138
BseJI	GATNNNNATC	2 cut(s)	137, 618
BseLI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	3 cut(s)	22, 77, 427
BseNI	ACTGG	5 cut(s)	362, 395, 472, 646, 692
BseRI	GAGGAG	3 cut(s)	200, 215, 230
BseXI	GCAGC	3 cut(s)	348, 395, 497
Bsh1236I	CGCG	1 cut(s)	198
BshNI	GGYRCC	2 cut(s)	296, 302
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	75, 174, 300
BslFI	GGGAC	2 cut(s)	537, 794
BslI	CCNNNNNNNGG	3 cut(s)	81, 390, 561
BsmAI	GTCTC	2 cut(s)	169, 205
BsmBI	CGTCTC	2 cut(s)	169, 205
BsmFI	GGGAC	2 cut(s)	537, 794
BsmI	GAATGC	2 cut(s)	577, 761
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	132, 159, 399, 619
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	21, 78, 426
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	187, 209, 298, 304
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	614
BspT107I	GGYRCC	2 cut(s)	296, 302
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	2 cut(s)	173, 299
BsrI	ACTGG	5 cut(s)	362, 395, 472, 646, 692
BssAI	RCCGGY	2 cut(s)	173, 299
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	4 cut(s)	132, 159, 399, 619
BssNI	GRCGYC	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	20, 205, 443
Bst4CI	ACNGT	4 cut(s)	307, 533, 559, 580
Bst6I	CTCTTC	2 cut(s)	260, 362
BstACI	GRCGYC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	92, 301, 508
BstDEI	CTNAG	3 cut(s)	8, 86, 413
BstF5I	GGATG	2 cut(s)	57, 138
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	299, 499
BstKTI	GATC	4 cut(s)	135, 162, 402, 622
BstMAI	GTCTC	2 cut(s)	169, 205
BstMBI	GATC	4 cut(s)	132, 159, 399, 619
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 96, 183, 214, 429, 503, 642
BstNI	CCWGG	3 cut(s)	20, 205, 443
BstSCI	CCNGG	3 cut(s)	18, 203, 441
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	348, 395, 497
BstV2I	GAAGAC	2 cut(s)	701, 709
BsuI	GTATCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	57, 138
BtsIMutI	CAGTG	2 cut(s)	421, 555
Cac8I	GCNNGC	3 cut(s)	92, 301, 508
CaiI	CAGNNNCTG	1 cut(s)	408
CfoI	GCGC	2 cut(s)	299, 499
Cfr10I	RCCGGY	2 cut(s)	173, 299
Cfr13I	GGNCC	1 cut(s)	564
CseI	GACGC	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	232, 609, 651
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	8, 86, 413
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	4 cut(s)	134, 161, 401, 621
DpnII	GATC	4 cut(s)	132, 159, 399, 619
DraIII	CACNNNGTG	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	260, 362
EarI	CTCTTC	2 cut(s)	260, 362
Eco47I	GGWCC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	18, 203, 441
EcoT22I	ATGCAT	1 cut(s)	610
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
Esp3I	CGTCTC	2 cut(s)	169, 205
FaeI	CATG	3 cut(s)	235, 612, 654
FaiI	YATR	8 cut(s)	82, 158, 233, 480, 546, 610, 652, 792
FaqI	GGGAC	2 cut(s)	537, 794
FatI	CATG	3 cut(s)	231, 608, 650
Fnu4HI	GCNGC	3 cut(s)	362, 409, 511
FokI	GGATG	2 cut(s)	44, 125
Fsp4HI	GCNGC	3 cut(s)	362, 409, 511
GlaI	GCGC	2 cut(s)	298, 498
GluI	GCNGC	3 cut(s)	362, 409, 511
GsuI	CTGGAG	3 cut(s)	143, 412, 418
HaeII	RGCGCY	1 cut(s)	300
HapII	CCGG	3 cut(s)	75, 174, 300
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	299, 499
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	235, 612, 654
Hin6I	GCGC	2 cut(s)	297, 497
HinP1I	GCGC	2 cut(s)	297, 497
HincII	GTYRAC	2 cut(s)	376, 709
HindII	GTYRAC	2 cut(s)	376, 709
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	3 cut(s)	75, 174, 300
HphI	GGTGA	4 cut(s)	34, 163, 277, 356
Hpy166II	GTNNAC	2 cut(s)	376, 709
Hpy188I	TCNGA	3 cut(s)	316, 526, 678
Hpy188III	TCNNGA	4 cut(s)	122, 403, 562, 766
Hpy8I	GTNNAC	2 cut(s)	376, 709
Hpy99I	CGWCG	3 cut(s)	71, 74, 251
HpyAV	CCTTC	2 cut(s)	55, 286
HpyCH4III	ACNGT	4 cut(s)	307, 533, 559, 580
HpyCH4V	TGCA	4 cut(s)	364, 603, 608, 761
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 96, 183, 214, 429, 503, 642
HpyF3I	CTNAG	3 cut(s)	8, 86, 413
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	235, 612, 654
HspAI	GCGC	2 cut(s)	297, 497
KasI	GGCGCC	1 cut(s)	296
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	132, 159, 399, 619
LmnI	GCTCC	6 cut(s)	59, 191, 213, 393, 405, 437
Lsp1109I	GCAGC	3 cut(s)	348, 395, 497
LweI	GCATC	1 cut(s)	156
MabI	ACCWGGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	344, 683
MalI	GATC	4 cut(s)	134, 161, 401, 621
MboI	GATC	4 cut(s)	132, 159, 399, 619
MboII	GAAGA	8 cut(s)	142, 247, 262, 379, 703, 706, 709, 718
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	784
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	610
MroNI	GCCGGC	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	3 cut(s)	75, 174, 300
MspR9I	CCNGG	3 cut(s)	20, 205, 443
Mva1269I	GAATGC	2 cut(s)	577, 761
MvaI	CCWGG	3 cut(s)	20, 205, 443
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	91, 96, 183, 214, 429, 503, 642
NaeI	GCCGGC	1 cut(s)	301
NarI	GGCGCC	1 cut(s)	297
NdeII	GATC	4 cut(s)	132, 159, 399, 619
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	235, 612, 654
NlaIV	GGNNCC	4 cut(s)	187, 209, 298, 304
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	2 cut(s)	577, 761
PdiI	GCCGGC	1 cut(s)	301
PflMI	CCANNNNNTGG	2 cut(s)	390, 561
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	363, 410, 512
PleI	GAGTC	1 cut(s)	380
PluTI	GGCGCC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	18, 203, 441
PspGI	CCWGG	3 cut(s)	18, 203, 441
PspN4I	GGNNCC	4 cut(s)	187, 209, 298, 304
PspPI	GGNCC	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	737
SatI	GCNGC	3 cut(s)	362, 409, 511
Sau3AI	GATC	4 cut(s)	132, 159, 399, 619
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	3 cut(s)	20, 205, 443
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	21, 47, 225, 342, 410, 429, 440, 630
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	362
SfoI	GGCGCC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	1 cut(s)	784
SsiI	CCGC	1 cut(s)	196
SspDI	GGCGCC	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	18, 203, 441
TaaI	ACNGT	4 cut(s)	307, 533, 559, 580
TasI	AATT	1 cut(s)	784
TatI	WGTACW	1 cut(s)	333
TscAI	CASTG	2 cut(s)	421, 562
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	361, 408, 510
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	17, 169, 561
TspGWI	ACGGA	1 cut(s)	736
TspRI	CASTG	2 cut(s)	421, 562
Van91I	CCANNNNNTGG	2 cut(s)	390, 561
VpaK11BI	GGWCC	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.