Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Forward (+)

9124270 .. 9126377

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAGCCAGTGTTCTTGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTCACGAGTTTTGTGTCTCTGTACAACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAGTATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0010204 GO:0012505 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

215

Amino Acids

25.56

Weight (kDa)

9.33

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	28 - 171	6.5e-59	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AccII	CGCG	1 cut(s)	139
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	3 cut(s)	61, 512, 560
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	4 cut(s)	176, 230, 380, 479
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	103, 569
AluBI	AGCT	6 cut(s)	20, 323, 409, 612, 631, 644
AluI	AGCT	6 cut(s)	20, 323, 409, 612, 631, 644
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	3 cut(s)	61, 512, 560
AoxI	GGCC	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	26, 35
BanI	GGYRCC	1 cut(s)	477
BauI	CACGAG	1 cut(s)	157
BbsI	GAAGAC	2 cut(s)	110, 363
BbvCI	CCTCAGC	1 cut(s)	405
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	38, 429
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme1390I	CCNGG	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	296, 479
BmrFI	CCNGG	1 cut(s)	559
BpiI	GAAGAC	2 cut(s)	110, 363
Bpu10I	CCTNAGC	2 cut(s)	405, 608
BpuEI	CTTGAG	3 cut(s)	47, 93, 374
BpuMI	CCSGG	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	469, 481
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	42, 506, 545
BseDI	CCNNGG	2 cut(s)	469, 481
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	419, 513
BseNI	ACTGG	3 cut(s)	42, 506, 545
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	450, 558
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	66, 504, 552
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	418, 514
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	296, 479
BspPI	GGATC	3 cut(s)	61, 512, 560
BspT107I	GGYRCC	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	42, 506, 545
BssECI	CCNNGG	2 cut(s)	469, 481
BssMI	GATC	3 cut(s)	66, 504, 552
BssNI	GRCGYC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	469
Bst2BI	CACGAG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	482, 512
BstACI	GRCGYC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	174
BstDEI	CTNAG	4 cut(s)	319, 405, 522, 608
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	492
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	69, 507, 555
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	66, 504, 552
BstSCI	CCNGG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	110, 363
BstX2I	RGATCY	2 cut(s)	66, 504
BstYI	RGATCY	2 cut(s)	66, 504
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	492
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	4 cut(s)	49, 519, 538, 572
CfoI	GCGC	1 cut(s)	89
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	175, 229, 379, 478
CviAII	CATG	3 cut(s)	232, 335, 549
CviQI	GTAC	4 cut(s)	175, 229, 379, 478
DdeI	CTNAG	4 cut(s)	319, 405, 522, 608
DpnI	GATC	3 cut(s)	68, 506, 554
DpnII	GATC	3 cut(s)	66, 504, 552
Eco130I	CCWWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	3 cut(s)	235, 338, 552
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	3 cut(s)	231, 334, 548
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	38, 429
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	450, 558
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	235, 338, 552
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	31, 106
HpaII	CCGG	2 cut(s)	450, 558
HphI	GGTGA	2 cut(s)	26, 35
Hpy166II	GTNNAC	4 cut(s)	253, 345, 366, 538
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	64, 110, 157, 353
Hpy8I	GTNNAC	4 cut(s)	253, 345, 366, 538
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	482, 512
HpyCH4IV	ACGT	2 cut(s)	281, 368
HpyCH4V	TGCA	1 cut(s)	421
HpyF3I	CTNAG	4 cut(s)	319, 405, 522, 608
HpySE526I	ACGT	2 cut(s)	281, 368
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	235, 338, 552
HspAI	GCGC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	66, 504, 552
LmnI	GCTCC	1 cut(s)	636
MaeI	CTAG	2 cut(s)	38, 429
MaeII	ACGT	2 cut(s)	281, 368
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	68, 506, 554
MboI	GATC	3 cut(s)	66, 504, 552
MboII	GAAGA	4 cut(s)	115, 363, 583, 628
MflI	RGATCY	2 cut(s)	66, 504
MluCI	AATT	1 cut(s)	635
MluI	ACGCGT	1 cut(s)	137
MlyI	GAGTC	2 cut(s)	25, 100
MnlI	CCTC	5 cut(s)	193, 349, 379, 414, 506
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	450, 558
MspR9I	CCNGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	3 cut(s)	66, 504, 552
NlaIII	CATG	3 cut(s)	235, 338, 552
NlaIV	GGNNCC	2 cut(s)	296, 479
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	528
PleI	GAGTC	2 cut(s)	25, 100
PpsI	GAGTC	2 cut(s)	25, 100
PspN4I	GGNNCC	2 cut(s)	296, 479
PsuI	RGATCY	2 cut(s)	66, 504
RsaI	GTAC	4 cut(s)	176, 230, 380, 479
RsaNI	GTAC	4 cut(s)	175, 229, 379, 478
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	3 cut(s)	66, 504, 552
SchI	GAGTC	2 cut(s)	25, 100
ScrFI	CCNGG	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	62, 108, 353
SmoI	CTYRAG	3 cut(s)	62, 108, 353
Sse9I	AATT	1 cut(s)	635
SsiI	CCGC	1 cut(s)	527
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	38, 429
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	482, 512
TaiI	ACGT	2 cut(s)	284, 371
TaqI	TCGA	1 cut(s)	218
TasI	AATT	1 cut(s)	635
TatI	WGTACW	2 cut(s)	174, 378
TauI	GCSGC	1 cut(s)	529
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	4 cut(s)	49, 526, 545, 579
TspDTI	ATGAA	6 cut(s)	17, 87, 203, 248, 351, 363
TspRI	CASTG	4 cut(s)	49, 526, 545, 579
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	38, 429
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.