Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

67621691 .. 67624739

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G040290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAGATGGAGTCAAGTCAACGCTCACCTGCTCTACAGAGGCGCGTGGAATAAGGGTGGTCAGAAGAGGAAGAAGAAGAAGCAAGCAAGCAACTGTGAAAAAGGGAAACATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTCCTGGGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAAACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGATACATGGACCTGATTGTGAAGTATTACTCTTTGTATAACACATTAGCCAAGCTCCTCTTCATCGGAACTTCTTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATCAAGATACTTTCAGACACTACTATCTGATCCTTGCTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTGTTGTGGACATTTTCAATATACCTTGAAGCTGTTGCAATCTTACCGCAATTGGTACTACTTCAAAGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGTACCTATCGAGCCCTATATCTTCTCAACTGGATCTATCGTTTCTTCACAGAGCTGCACAGAGTTCGCTGGATACGTTGGATCTCAGGCCTAGTTCAGACTGCTCTTTATGCCGACTTTTTCTACTATTATATCAAGAGCTGGAAGAAGCATGAAGAGCTTAAGCTTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

252

Amino Acids

29.69

Weight (kDa)

9.89

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	65 - 208	8.4e-56	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
Acc65I	GGTACC	2 cut(s)	348, 584
AccB1I	GGYRCC	2 cut(s)	348, 584
AccB7I	CCANNNNNTGG	2 cut(s)	151, 336
AccII	CGCG	1 cut(s)	46
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	4 cut(s)	390, 406, 623, 671
AfaI	GTAC	4 cut(s)	341, 350, 525, 586
AfiI	CCNNNNNNNGG	3 cut(s)	151, 256, 336
AflII	CTTAAG	2 cut(s)	173, 743
AgsI	TTSAA	5 cut(s)	467, 486, 497, 533, 540
AjnI	CCWGG	2 cut(s)	150, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	6 cut(s)	304, 500, 637, 723, 742, 748
AluI	AGCT	6 cut(s)	304, 500, 637, 723, 742, 748
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	4 cut(s)	390, 406, 623, 671
AoxI	GGCC	2 cut(s)	333, 670
ApeKI	GCWGC	1 cut(s)	637
Asp718I	GGTACC	2 cut(s)	348, 584
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	19, 238
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	348, 584
BanII	GRGCYC	1 cut(s)	598
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbvI	GCAGC	1 cut(s)	624
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	2 cut(s)	152, 337
BciVI	GTATCC	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	36
BfrI	CTTAAG	2 cut(s)	173, 743
BfuAI	ACCTGC	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	1 cut(s)	638
BlsI	GCNGC	1 cut(s)	639
Bme1390I	CCNGG	2 cut(s)	152, 337
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	350, 586
BmrFI	CCNGG	2 cut(s)	152, 337
BpuEI	CTTGAG	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	151, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 256, 336
Bse1I	ACTGG	3 cut(s)	165, 565, 617
BseBI	CCWGG	2 cut(s)	152, 337
BseDI	CCNNGG	2 cut(s)	151, 330
BseLI	CCNNNNNNNGG	3 cut(s)	151, 256, 336
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	3 cut(s)	165, 565, 617
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	624
BsgI	GTGCAG	2 cut(s)	219, 623
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	335, 672
BshNI	GGYRCC	2 cut(s)	348, 584
BslI	CCNNNNNNNGG	3 cut(s)	151, 256, 336
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	335, 672
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	4 cut(s)	382, 411, 615, 663
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	335, 672
BspCNI	CTCAG	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	350, 586
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	390, 406, 623, 671
BspQI	GCTCTTC	2 cut(s)	441, 732
BspT107I	GGYRCC	2 cut(s)	348, 584
BspTI	CTTAAG	2 cut(s)	173, 743
BsrI	ACTGG	3 cut(s)	165, 565, 617
BssECI	CCNNGG	2 cut(s)	151, 330
BssMI	GATC	4 cut(s)	382, 411, 615, 663
Bst2UI	CCWGG	2 cut(s)	152, 337
Bst4CI	ACNGT	3 cut(s)	97, 228, 460
Bst6I	CTCTTC	4 cut(s)	61, 314, 441, 732
BstAFI	CTTAAG	2 cut(s)	173, 743
BstC8I	GCNNGC	3 cut(s)	86, 90, 421
BstDEI	CTNAG	1 cut(s)	667
BstDSI	CCRYGG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	385, 414, 618, 666
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	4 cut(s)	382, 411, 615, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 739
BstNI	CCWGG	2 cut(s)	152, 337
BstSCI	CCNGG	2 cut(s)	150, 335
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	624
BstX2I	RGATCY	2 cut(s)	615, 663
BstYI	RGATCY	2 cut(s)	615, 663
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	335, 672
BtgI	CCRYGG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	86, 90, 421
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	4 cut(s)	340, 349, 524, 585
CspCI	CAANNNNNGTGG	2 cut(s)	455, 490
CviAII	CATG	6 cut(s)	112, 139, 256, 343, 449, 734
CviQI	GTAC	4 cut(s)	340, 349, 524, 585
DdeI	CTNAG	1 cut(s)	667
DpnI	GATC	4 cut(s)	384, 413, 617, 665
DpnII	GATC	4 cut(s)	382, 411, 615, 663
Eam1104I	CTCTTC	4 cut(s)	61, 314, 441, 732
EarI	CTCTTC	4 cut(s)	61, 314, 441, 732
Eco147I	AGGCCT	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	150, 335
EcoT38I	GRGCYC	1 cut(s)	598
FaeI	CATG	6 cut(s)	115, 142, 259, 346, 452, 737
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	6 cut(s)	111, 138, 255, 342, 448, 733
Fnu4HI	GCNGC	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	1 cut(s)	638
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	335, 672
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	6 cut(s)	115, 142, 259, 346, 452, 737
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	4 cut(s)	12, 115, 178, 442
HphI	GGTGA	2 cut(s)	19, 238
Hpy166II	GTNNAC	2 cut(s)	21, 477
Hpy188I	TCNGA	6 cut(s)	65, 317, 398, 411, 441, 681
Hpy188III	TCNNGA	4 cut(s)	221, 386, 540, 718
Hpy8I	GTNNAC	2 cut(s)	21, 477
HpyCH4III	ACNGT	3 cut(s)	97, 228, 460
HpyCH4IV	ACGT	2 cut(s)	570, 658
HpyCH4V	TGCA	3 cut(s)	200, 506, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 739
HpyF3I	CTNAG	1 cut(s)	667
HpySE526I	ACGT	2 cut(s)	570, 658
Hsp92II	CATG	6 cut(s)	115, 142, 259, 346, 452, 737
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	2 cut(s)	352, 588
Kzo9I	GATC	4 cut(s)	382, 411, 615, 663
LguI	GCTCTTC	2 cut(s)	441, 732
LmnI	GCTCC	1 cut(s)	309
Lsp1109I	GCAGC	1 cut(s)	624
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	2 cut(s)	570, 658
MalI	GATC	4 cut(s)	384, 413, 617, 665
MboI	GATC	4 cut(s)	382, 411, 615, 663
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	615, 663
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	2 cut(s)	462, 518
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	6 cut(s)	34, 62, 158, 221, 317, 339
MseI	TTAA	2 cut(s)	174, 744
MspCI	CTTAAG	2 cut(s)	173, 743
MspR9I	CCNGG	2 cut(s)	152, 337
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	2 cut(s)	152, 337
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	692, 739
NdeII	GATC	4 cut(s)	382, 411, 615, 663
NlaIII	CATG	6 cut(s)	115, 142, 259, 346, 452, 737
NlaIV	GGNNCC	2 cut(s)	350, 586
PaqCI	CACCTGC	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	672
PciSI	GCTCTTC	2 cut(s)	441, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PfeI	GAWTC	3 cut(s)	115, 178, 442
PflMI	CCANNNNNTGG	2 cut(s)	151, 336
PkrI	GCNGC	1 cut(s)	639
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	150, 335
PspGI	CCWGG	2 cut(s)	150, 335
PspN4I	GGNNCC	2 cut(s)	350, 586
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	615, 663
RsaI	GTAC	4 cut(s)	341, 350, 525, 586
RsaNI	GTAC	4 cut(s)	340, 349, 524, 585
SapI	GCTCTTC	2 cut(s)	441, 732
SaqAI	TTAA	2 cut(s)	174, 744
SatI	GCNGC	1 cut(s)	638
Sau3AI	GATC	4 cut(s)	382, 411, 615, 663
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	152, 337
SduI	GDGCHC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	173, 219, 743
SmoI	CTYRAG	3 cut(s)	173, 219, 743
Sse9I	AATT	2 cut(s)	462, 518
SseBI	AGGCCT	1 cut(s)	672
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	672
StyD4I	CCNGG	2 cut(s)	150, 335
TaaI	ACNGT	3 cut(s)	97, 228, 460
TaiI	ACGT	2 cut(s)	573, 661
TaqI	TCGA	1 cut(s)	592
TasI	AATT	2 cut(s)	462, 518
TfiI	GAWTC	3 cut(s)	115, 178, 442
Tru1I	TTAA	2 cut(s)	174, 744
Tru9I	TTAA	2 cut(s)	174, 744
TseI	GCWGC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	128, 301, 750
Van91I	CCANNNNNTGG	2 cut(s)	151, 336
Vha464I	CTTAAG	2 cut(s)	173, 743
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.