Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

552162 .. 554781

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGTCAGTCAACGCTCACCTGCTCTACAGGGGCGCGTGGAATAAGGGTGGTCAGTCTTCAATCAAATTAAAAGAGAGAAGTTGGAAACACTTGAAGAAGAAGAAGAAGAAGCAAGCAACTGTGAAAAAGGGAAACATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTTCTCGGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAGACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGATACATGGACCTGATTGTGAAGTCTTACTCTTTGTATAACACATTAGGCAAGCTCATCTTCACCGGAACTTCCTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATCAAGATACTTTCAGACACTACTATCTGATCCTTGTTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTGTTGTGGACATTTTCAATATACCTTGAAGCTGTTGCAATCTTACCGCAGTTGGTACTACTTCAAAGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGTGCCTATCGAGCCCTATATCTTCTCAACTGGATCTATCGTTTCTTCACAGAGCTGCACAGAGTTCGCTGGATACCTTGGATCTCAGGCCTAGTTCAGACTGCTCTTTATGCCGACTTTTTTTACTATTATATCAAGAGCTGGAAGAAGCATGAAGAGCTTAAGCTTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

261

Amino Acids

30.78

Weight (kDa)

9.86

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	74 - 217	1e-54	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	2 cut(s)	375, 611
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	4 cut(s)	417, 433, 650, 698
AfaI	GTAC	3 cut(s)	368, 377, 552
AfiI	CCNNNNNNNGG	2 cut(s)	283, 363
AflII	CTTAAG	2 cut(s)	200, 770
AgsI	TTSAA	7 cut(s)	63, 97, 494, 513, 524, 560, 567
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	6 cut(s)	331, 527, 664, 750, 769, 775
AluI	AGCT	6 cut(s)	331, 527, 664, 750, 769, 775
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	4 cut(s)	417, 433, 650, 698
AoxI	GGCC	2 cut(s)	360, 697
ApeKI	GCWGC	1 cut(s)	664
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	11, 265, 331
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	375, 611
BanII	GRGCYC	1 cut(s)	625
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	651
BceAI	ACGGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	28
BfrI	CTTAAG	2 cut(s)	200, 770
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	377, 613
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	224, 231
BsaJI	CCNNGG	2 cut(s)	357, 686
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 363
Bse1I	ACTGG	3 cut(s)	192, 592, 644
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	357, 686
BseLI	CCNNNNNNNGG	2 cut(s)	283, 363
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	3 cut(s)	192, 592, 644
BseXI	GCAGC	1 cut(s)	651
BsgI	GTGCAG	2 cut(s)	246, 650
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	362, 699
BshNI	GGYRCC	2 cut(s)	375, 611
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	283, 363
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	362, 699
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	409, 438, 642, 690
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	2 cut(s)	362, 699
BspCNI	CTCAG	1 cut(s)	707
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	377, 613
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	4 cut(s)	417, 433, 650, 698
BspQI	GCTCTTC	2 cut(s)	468, 759
BspT107I	GGYRCC	2 cut(s)	375, 611
BspTI	CTTAAG	2 cut(s)	200, 770
BsrI	ACTGG	3 cut(s)	192, 592, 644
BssECI	CCNNGG	2 cut(s)	357, 686
BssMI	GATC	4 cut(s)	409, 438, 642, 690
BssT1I	CCWWGG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	124, 255, 487
Bst6I	CTCTTC	2 cut(s)	468, 759
BstAFI	CTTAAG	2 cut(s)	200, 770
BstC8I	GCNNGC	2 cut(s)	117, 329
BstDEI	CTNAG	1 cut(s)	694
BstDSI	CCRYGG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	4 cut(s)	412, 441, 645, 693
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	409, 438, 642, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 719, 766
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	651
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	642, 690
BstYI	RGATCY	2 cut(s)	642, 690
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	362, 699
BtgI	CCRYGG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	117, 329
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	367, 376, 551
CspCI	CAANNNNNGTGG	2 cut(s)	482, 517
CviAII	CATG	6 cut(s)	139, 166, 283, 370, 476, 761
CviQI	GTAC	3 cut(s)	367, 376, 551
DdeI	CTNAG	1 cut(s)	694
DpnI	GATC	4 cut(s)	411, 440, 644, 692
DpnII	GATC	4 cut(s)	409, 438, 642, 690
Eam1104I	CTCTTC	2 cut(s)	468, 759
EarI	CTCTTC	2 cut(s)	468, 759
Eco130I	CCWWGG	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	686
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	686
FaeI	CATG	6 cut(s)	142, 169, 286, 373, 479, 764
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	6 cut(s)	138, 165, 282, 369, 475, 760
Fnu4HI	GCNGC	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	1 cut(s)	665
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	362, 699
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	6 cut(s)	142, 169, 286, 373, 479, 764
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	5 cut(s)	5, 142, 205, 244, 469
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	3 cut(s)	11, 265, 331
Hpy166II	GTNNAC	2 cut(s)	13, 504
Hpy188I	TCNGA	4 cut(s)	425, 438, 468, 708
Hpy188III	TCNNGA	5 cut(s)	241, 248, 413, 567, 745
Hpy8I	GTNNAC	2 cut(s)	13, 504
HpyAV	CCTTC	2 cut(s)	185, 361
HpyCH4III	ACNGT	3 cut(s)	124, 255, 487
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	3 cut(s)	227, 533, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 719, 766
HpyF3I	CTNAG	1 cut(s)	694
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	6 cut(s)	142, 169, 286, 373, 479, 764
HspAI	GCGC	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	409, 438, 642, 690
LguI	GCTCTTC	2 cut(s)	468, 759
Lsp1109I	GCAGC	1 cut(s)	651
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	597
MalI	GATC	4 cut(s)	411, 440, 644, 692
MboI	GATC	4 cut(s)	409, 438, 642, 690
MflI	RGATCY	2 cut(s)	642, 690
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	2 cut(s)	68, 489
MlyI	GAGTC	2 cut(s)	14, 238
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	248, 366
MseI	TTAA	3 cut(s)	71, 201, 771
MspCI	CTTAAG	2 cut(s)	200, 770
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	620, 719, 766
NdeII	GATC	4 cut(s)	409, 438, 642, 690
NlaIII	CATG	6 cut(s)	142, 169, 286, 373, 479, 764
NlaIV	GGNNCC	2 cut(s)	377, 613
NmeAIII	GCCGAG	1 cut(s)	159
PaqCI	CACCTGC	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	699
PciSI	GCTCTTC	2 cut(s)	468, 759
PfeI	GAWTC	3 cut(s)	142, 205, 469
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	666
PleI	GAGTC	2 cut(s)	13, 238
PpsI	GAGTC	2 cut(s)	13, 238
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	377, 613
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	642, 690
RsaI	GTAC	3 cut(s)	368, 377, 552
RsaNI	GTAC	3 cut(s)	367, 376, 551
SapI	GCTCTTC	2 cut(s)	468, 759
SaqAI	TTAA	3 cut(s)	71, 201, 771
SatI	GCNGC	1 cut(s)	665
Sau3AI	GATC	4 cut(s)	409, 438, 642, 690
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	14, 238
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	4 cut(s)	200, 239, 246, 770
SmoI	CTYRAG	4 cut(s)	200, 239, 246, 770
Sse9I	AATT	2 cut(s)	68, 489
SseBI	AGGCCT	1 cut(s)	699
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	1 cut(s)	701
StuI	AGGCCT	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	3 cut(s)	124, 255, 487
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	619
TasI	AATT	2 cut(s)	68, 489
TfiI	GAWTC	3 cut(s)	142, 205, 469
Tru1I	TTAA	3 cut(s)	71, 201, 771
Tru9I	TTAA	3 cut(s)	71, 201, 771
TseI	GCWGC	1 cut(s)	664
TspDTI	ATGAA	2 cut(s)	155, 777
Van91I	CCANNNNNTGG	1 cut(s)	363
Vha464I	CTTAAG	2 cut(s)	200, 770
VpaK11BI	GGWCC	1 cut(s)	286
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.