Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

45539782 .. 45545307

Gene Structure 5526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTGATGGTGACTCAGATCTACAAAAGCACCCAACTTCCCAGGTTCGATATCGCCGGATACGCGACATGCGTTACCGTCCCCTTTACTTTTAAGGCCTTAAGGCAGCACTGGATTGTTCGCAAGTCCTATGATAGAGACCAAGACACCTTCCGCCATCATTTCCTACTGGCACCATGTCTAGTTTTGGCCCTAATATTCAATGAGAAGTTCACTTTCAAGGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

76

Amino Acids

9.06

Weight (kDa)

9.39

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	32 - 76	3e-08	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	202, 220
AjnI	CCWGG	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	96, 189
ApeKI	GCWGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	16, 22
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	116, 174
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	116, 174
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	98, 191
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	98, 191
Bso31I	GGTCTC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	98, 191
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	116, 174
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	79
BstAFI	CTTAAG	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	98, 191
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	2 cut(s)	69, 177
CviJI	RGCY	2 cut(s)	98, 191
CviKI_1	RGCY	2 cut(s)	98, 191
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	2 cut(s)	72, 180
FaiI	YATR	4 cut(s)	70, 132, 178, 229
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	68, 176
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	98, 191
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	72, 180
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	16, 22
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	72, 180
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	28, 55, 70, 97, 155
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	10, 73
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MflI	RGATCY	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	7
MseI	TTAA	2 cut(s)	93, 101
MspCI	CTTAAG	1 cut(s)	100
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	72, 180
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	93, 101
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	2 cut(s)	47, 152
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	154
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	93, 101
Tru9I	TTAA	2 cut(s)	93, 101
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	10
TspRI	CASTG	1 cut(s)	116
Vha464I	CTTAAG	1 cut(s)	100
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.