Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005257.1

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

16727 .. 19420

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005257.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgacccatcttgccagcgtcctcgtcttgctcctcaagatccataccatcaaatcctgtgctggtgtttctttgaagactcaagaactctatgcccttgtttttgttactcgctacttggacattttcaccgatttcatatctttatataacaccgtcatgaagctaatattcttggggagttctttttcaattgtttggtacattaggcagcacaggattgttcgcaggtcctatgatagagaccaagacaccttccgccatcatttcctactggcaccatgcctagttttggccctaatattcaatgagaagttcactttcaaggaggtcatgtggtcattttcattatttttagaagctgttgctatccttcctcagcttgtgctgttacagagaacgagaaatattgacaacttgacagggcaatacgtcttcctccttggtgcataccgagcattatacatcctcaactggatttaccgctacttcactgaaccacactatatccattggacaccatggattgctgggattgttcaaacactgctttatggcgacttcttctactattatttccacagttggaaaaacaaccagaagcttcagatacctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

206

Amino Acids

24.63

Weight (kDa)

9.39

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	2 cut(s)	259, 484
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	76, 192, 307, 325, 542
AluBI	AGCT	4 cut(s)	166, 362, 382, 604
AluI	AGCT	4 cut(s)	166, 362, 382, 604
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	231, 295
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	277
BbsI	GAAGAC	2 cut(s)	83, 427
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	15, 56, 270
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	231, 295
BmiI	GGNNCC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	83, 427
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	20, 66
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	442, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	279, 479
BseDI	CCNNGG	2 cut(s)	442, 521
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	279, 479
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	2 cut(s)	259, 484
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	279, 479
BssECI	CCNNGG	2 cut(s)	442, 521
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	442, 521
Bst4CI	ACNGT	2 cut(s)	157, 584
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	2 cut(s)	83, 427
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	2 cut(s)	492, 545
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	231, 295
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	160, 282, 334, 522
CviJI	RGCY	5 cut(s)	166, 296, 362, 382, 604
CviKI_1	RGCY	5 cut(s)	166, 296, 362, 382, 604
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	442, 521
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	442, 521
ErhI	CCWWGG	2 cut(s)	442, 521
FaeI	CATG	4 cut(s)	163, 285, 337, 525
FatI	CATG	4 cut(s)	159, 281, 333, 521
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	296
HgaI	GACGC	1 cut(s)	7
Hin1II	CATG	4 cut(s)	163, 285, 337, 525
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	3 cut(s)	37, 83, 160
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	265, 383
HpyCH4III	ACNGT	2 cut(s)	157, 584
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	163, 285, 337, 525
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	106, 390
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	3 cut(s)	88, 427, 556
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	32, 44, 322, 387, 449, 479
MslI	CAYNNNNRTG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	4 cut(s)	163, 285, 337, 525
NlaIV	GGNNCC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	231, 295
PspPPI	RGGWCCY	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	231, 295
SchI	GAGTC	1 cut(s)	73
SetI	ASST	9 cut(s)	168, 233, 257, 333, 364, 384, 435, 606, 616
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	35, 81
SmoI	CTYRAG	2 cut(s)	35, 81
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	259, 484
SspI	AATATT	3 cut(s)	171, 303, 409
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	442, 521
TaaI	ACNGT	2 cut(s)	157, 584
TaiI	ACGT	1 cut(s)	435
TasI	AATT	1 cut(s)	192
TscAI	CASTG	2 cut(s)	499, 552
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	127, 176, 336
TspRI	CASTG	2 cut(s)	499, 552
VpaK11BI	GGWCC	1 cut(s)	231
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.