Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

45566156 .. 45570099

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG279200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGGATGATGAAACAACCCCAGTTAAGGCTTGTGGGGATTTGGCCTATGAGGTTAACCAAAGAGAAATGAGGGTTTCAGATAATAGAAACAAGGAACCAGAAGAACAGAGAGAATCTTTCGCGCAAGTAAAAAGGCGTCGGATGCTACAATTTGATACTGAAGCAATGGATTCTTCCCTTTCAAGTGAAGACTTATCGTCTACATTCTTGAAATCAAATGAGGGGGTTGATTCAATTGAGGAGGCTTTTGAAGCAACAAATTGGGTATCTGGGTTTTCAGAAAATACATCTGCCTCTGGCTATGAATGCCTAGATGAATCACCGGATAGGTGGATTGATGAGTGCTTCAATGATCCTGCTGATATGCAATTCAGCCCTGATGATATGAATTTCTCTGGTGCATCTGATGTTCATATTGACATTACAAAGTTGTGCGACATCCAACCTGAGTATCATGCAAATGTGATTCAACAGCGAATTACTCGAGCACCTCGAAATATCATATTTAGAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGCTGGCTACTTCTGTGGCATATCCATTTGCATTCATTAAACCCTCTGGAACCCATGGAGCTGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCGCCACCTTCAAAAGCAAAGCAAAAAGAGCCTGAACCATATCCCACTTCAGCCTTTTCTGGGAAACCTGTCGTTGGCAAAACTAAAATTCGCACTGAAGGAGGAAAAGGCAGCATTACAATAATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.19

Weight (kDa)

5.44

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	203
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	631, 637, 644
AclWI	GGATC	3 cut(s)	350, 628, 641
AcsI	RAATTY	2 cut(s)	391, 729
AcuI	CTGAAG	4 cut(s)	183, 635, 675, 759
AcyI	GRCGYC	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	28, 702, 716
AgsI	TTSAA	7 cut(s)	186, 214, 237, 254, 352, 473, 654
AhdI	GACNNNNNGTC	1 cut(s)	199
AluBI	AGCT	2 cut(s)	547, 605
AluI	AGCT	2 cut(s)	547, 605
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	3 cut(s)	350, 628, 641
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	753
ApoI	RAATTY	2 cut(s)	391, 729
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	486
BaeI	ACNNNNGTAYC	2 cut(s)	437, 470
BamHI	GGATCC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	754
BlsI	GCNGC	1 cut(s)	755
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	486
BmiI	GGNNCC	3 cut(s)	99, 595, 635
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	135, 413
BmuI	ACTGGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	598
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 702, 716
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	3 cut(s)	13, 150, 441
BseLI	CCNNNNNNNGG	3 cut(s)	28, 702, 716
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	28, 702, 716
BsmI	GAATGC	2 cut(s)	314, 575
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	355, 633
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	3 cut(s)	631, 637, 644
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	99, 595, 635
BspPI	GGATC	3 cut(s)	350, 628, 641
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	355, 633
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	598
BstACI	GRCGYC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	450, 543
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	13, 150, 441
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	358, 636
BstMBI	GATC	2 cut(s)	355, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 254, 309, 670
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	765
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	13, 150, 441
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	458, 599
DdeI	CTNAG	2 cut(s)	450, 543
DpnI	GATC	2 cut(s)	357, 635
DpnII	GATC	2 cut(s)	355, 633
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	598
Eco57I	CTGAAG	4 cut(s)	183, 635, 675, 759
Eco88I	CYCGRG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	2 cut(s)	461, 602
FatI	CATG	2 cut(s)	457, 598
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	754
FokI	GGATG	3 cut(s)	20, 157, 428
Fsp4HI	GCNGC	1 cut(s)	754
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	754
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	461, 602
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	6 cut(s)	116, 173, 233, 320, 469, 535
HpaI	GTTAAC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	2 cut(s)	58, 204
Hpy188I	TCNGA	6 cut(s)	82, 144, 283, 409, 534, 615
Hpy188III	TCNNGA	2 cut(s)	211, 591
Hpy8I	GTNNAC	2 cut(s)	58, 204
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	610, 660, 734
HpyCH4V	TGCA	4 cut(s)	370, 404, 461, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 254, 309, 670
HpyF3I	CTNAG	2 cut(s)	450, 543
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	461, 602
HspAI	GCGC	1 cut(s)	125
KspAI	GTTAAC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	355, 633
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	2 cut(s)	135, 413
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	2 cut(s)	357, 635
MboI	GATC	2 cut(s)	355, 633
MboII	GAAGA	3 cut(s)	116, 168, 203
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	7 cut(s)	152, 237, 262, 371, 391, 480, 729
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	2 cut(s)	122, 469
MseI	TTAA	3 cut(s)	27, 57, 582
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	2 cut(s)	314, 575
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	145, 254, 309, 670
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	2 cut(s)	355, 633
NlaIII	CATG	2 cut(s)	461, 602
NlaIV	GGNNCC	3 cut(s)	99, 595, 635
PaeR7I	CTCGAG	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	2 cut(s)	314, 575
PfeI	GAWTC	5 cut(s)	116, 173, 233, 320, 469
PkrI	GCNGC	1 cut(s)	755
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	99, 595, 635
PspXI	VCTCGAGB	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	633
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	27, 57, 582
SatI	GCNGC	1 cut(s)	754
Sau3AI	GATC	2 cut(s)	355, 633
SchI	GAGTC	1 cut(s)	529
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	9 cut(s)	57, 335, 451, 496, 517, 549, 607, 652, 712
SfaNI	GCATC	2 cut(s)	135, 413
Sfr274I	CTCGAG	1 cut(s)	486
SlaI	CTCGAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	7 cut(s)	152, 237, 262, 371, 391, 480, 729
SsiI	CCGC	3 cut(s)	631, 637, 644
SspMI	CTAG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	598
TaqI	TCGA	2 cut(s)	487, 496
TasI	AATT	7 cut(s)	152, 237, 262, 371, 391, 480, 729
TfiI	GAWTC	5 cut(s)	116, 173, 233, 320, 469
Tru1I	TTAA	3 cut(s)	27, 57, 582
Tru9I	TTAA	3 cut(s)	27, 57, 582
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	1 cut(s)	753
TspDTI	ATGAA	6 cut(s)	27, 321, 333, 404, 404, 568
TspRI	CASTG	1 cut(s)	742
XapI	RAATTY	2 cut(s)	391, 729
XhoI	CTCGAG	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.