Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

46445875 .. 46448830

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATTACAATAATGACGATCAGCGTTGGGATTGGCACCGGAATCCTCGTATCCAAAAGGACTCCAATCACGACATATCTGAATGCCTGTGGAATGGAGTGCCTCAGAATCAAGAGGACCTTTCTTACATGTTGGATGATGAAACAACCCCAGTTAAGGCTTGTGGGGATTTGGCCTATGAGGTTAACCAAAGAGATAATAGAAACAAGGAACCAGAAGAACAGAGAGAATCTTTCTCGCAAGTAAAAAGGCGTCGGATGCTACAATTTGATACTGAAGCAATGGATTCTTCCCTTTCAAGTGAAGACTTATCGTCTACATTCTTGAAATCAAATGAGGGGGTTGATTCAATTGAGGAGGCTTTTGAAGCAACAAATTGGGTATCTGGGTTTTCAGAAAATACATCTGCCTCTGGCTATGAATGCCTAGATGAATCACCGGATAGGTGGATTGATGAGTGCTTCAATGATCCTACTGATATGCAATTCAGCCCTGATGATATGAATTTCTCTGGTGCATCTGATGTTCACATTGACATTACAAAGTTGTGCGACATCCAATCTGAGTATCATGCAAATGTGATTCAACAGCGAGTTACTCGAGCACCTCGAAATATCATATTTAGAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGCTGGCTACTTCTGTGGCATATCCATTTGCATTCATTAAACCCTCTGGAACCCATGGAGCTGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCGCCACCTTCAAAAGCAAAGCAAAAAGAGCCTGAACCATATCCTACTTCAGCCTTTTCTGGGAAACCTGTCGTTGGCAAGACTAAAATTCGCACTGAAGGAGGAAAAGGCAGCATTACAATAATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.93

Weight (kDa)

5.15

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	3 cut(s)	745, 751, 758
AclWI	GGATC	3 cut(s)	464, 742, 755
AcsI	RAATTY	2 cut(s)	505, 843
AcuI	CTGAAG	4 cut(s)	297, 749, 789, 873
AcyI	GRCGYC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	157, 816, 830
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	7 cut(s)	300, 328, 351, 368, 466, 587, 768
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	2 cut(s)	661, 719
AluI	AGCT	2 cut(s)	661, 719
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	3 cut(s)	464, 742, 755
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	867
ApoI	RAATTY	2 cut(s)	505, 843
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	1 cut(s)	879
BciVI	GTATCC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	868
BlsI	GCNGC	1 cut(s)	869
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	4 cut(s)	38, 213, 709, 749
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	249, 527
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	712
BsaWI	WCCGGW	2 cut(s)	39, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 816, 830
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	3 cut(s)	142, 264, 555
BseLI	CCNNNNNNNGG	3 cut(s)	157, 816, 830
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	119, 555
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	879
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	40, 440
BslI	CCNNNNNNNGG	3 cut(s)	157, 816, 830
BsmI	GAATGC	3 cut(s)	89, 428, 689
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	19, 469, 747
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	3 cut(s)	745, 751, 758
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	118, 556
BspLI	GGNNCC	4 cut(s)	38, 213, 709, 749
BspPI	GGATC	3 cut(s)	464, 742, 755
BspT107I	GGYRCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	19, 469, 747
BssNI	GRCGYC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	712
BstACI	GRCGYC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	105, 564, 657
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	3 cut(s)	142, 264, 555
BstKTI	GATC	3 cut(s)	22, 472, 750
BstMBI	GATC	3 cut(s)	19, 469, 747
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 368, 423, 784
BstNSI	RCATGY	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	879
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	142, 264, 555
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	1 cut(s)	663
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	242
CviAII	CATG	3 cut(s)	130, 572, 713
DdeI	CTNAG	3 cut(s)	105, 564, 657
DpnI	GATC	3 cut(s)	21, 471, 749
DpnII	GATC	3 cut(s)	19, 469, 747
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	4 cut(s)	297, 749, 789, 873
Eco88I	CYCGRG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	3 cut(s)	133, 575, 716
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	3 cut(s)	129, 571, 712
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	868
FokI	GGATG	3 cut(s)	149, 271, 542
Fsp4HI	GCNGC	1 cut(s)	868
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	1 cut(s)	868
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	40, 440
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	133, 575, 716
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	9 cut(s)	43, 62, 109, 230, 287, 347, 434, 583, 649
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	40, 440
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	3 cut(s)	187, 318, 529
Hpy188I	TCNGA	8 cut(s)	82, 108, 258, 397, 523, 565, 648, 729
Hpy188III	TCNNGA	4 cut(s)	71, 113, 325, 705
Hpy8I	GTNNAC	3 cut(s)	187, 318, 529
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	3 cut(s)	724, 774, 848
HpyCH4V	TGCA	4 cut(s)	484, 518, 575, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 368, 423, 784
HpyF3I	CTNAG	3 cut(s)	105, 564, 657
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	3 cut(s)	133, 575, 716
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	19, 469, 747
LmnI	GCTCC	1 cut(s)	716
Lsp1109I	GCAGC	1 cut(s)	879
LweI	GCATC	2 cut(s)	249, 527
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	595, 721
MalI	GATC	3 cut(s)	21, 471, 749
MboI	GATC	3 cut(s)	19, 469, 747
MboII	GAAGA	3 cut(s)	230, 282, 317
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	6 cut(s)	266, 351, 376, 485, 505, 843
MlyI	GAGTC	2 cut(s)	56, 643
MmeI	TCCRAC	2 cut(s)	114, 236
MseI	TTAA	3 cut(s)	156, 186, 696
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	2 cut(s)	40, 440
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	3 cut(s)	89, 428, 689
MwoI	GCNNNNNNNGC	4 cut(s)	259, 368, 423, 784
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	3 cut(s)	19, 469, 747
NlaIII	CATG	3 cut(s)	133, 575, 716
NlaIV	GGNNCC	4 cut(s)	38, 213, 709, 749
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	600
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PctI	GAATGC	3 cut(s)	89, 428, 689
PfeI	GAWTC	7 cut(s)	43, 109, 230, 287, 347, 434, 583
PkrI	GCNGC	1 cut(s)	869
PleI	GAGTC	2 cut(s)	56, 643
PpsI	GAGTC	2 cut(s)	56, 643
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	4 cut(s)	38, 213, 709, 749
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	747
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	156, 186, 696
SatI	GCNGC	1 cut(s)	868
Sau3AI	GATC	3 cut(s)	19, 469, 747
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	56, 643
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	9 cut(s)	123, 186, 449, 610, 631, 663, 721, 766, 826
SfaNI	GCATC	2 cut(s)	249, 527
Sfr274I	CTCGAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	6 cut(s)	266, 351, 376, 485, 505, 843
SsiI	CCGC	3 cut(s)	745, 751, 758
SspMI	CTAG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	712
TaqI	TCGA	2 cut(s)	601, 610
TasI	AATT	6 cut(s)	266, 351, 376, 485, 505, 843
TfiI	GAWTC	7 cut(s)	43, 109, 230, 287, 347, 434, 583
Tru1I	TTAA	3 cut(s)	156, 186, 696
Tru9I	TTAA	3 cut(s)	156, 186, 696
TscAI	CASTG	1 cut(s)	856
TseI	GCWGC	1 cut(s)	867
TspDTI	ATGAA	5 cut(s)	156, 435, 447, 518, 682
TspRI	CASTG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	505, 843
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.