Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

47103199 .. 47107264

Gene Structure 4066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATTACAATAATGACGATCAGCGTTGGGATTGGCACCGGAATCCTCGTATCCAAAAGGACTCCAATCACGACATATCTGAATGCCTGTGGAATGGAGTGCCTCAGAATCAAGAGGACCTTTCTTACATGTTGGATGATGAAACAACCCCAGTTAAGGCTTGTGGGGATTTGGCCTATGAGGTTAACCAAAGAGATAATAGAAACAAGGAACCAGAAGAACAGAGAGAATCTTTCTCGCAAGTAAAAAGGCGTCGGATGCTACAATTTGATACTGAAGCAATGGATTCTTCCCTTTCAAGTGAAGACTTATCGTCTACATTCTTGAAATCAAATGAGGGGGTTGATTCAATTGAGGAGGCTTTTGAAGCAACAAATTGGGTATCTGGGTTTTCAGAAAATACATCTGCCTCTGGCTATGAATGCCTAGATGAATCACCGGATAGGTGGATTGATGAGTGCTTCAATGATCCTGCTGATATGCAATTCAGCCCTGATGATATGAATTTCTCTGGTGCATCTGATGTTCACATTGACATTACAAAGTTGTGCGACATCCAATCTGAGTATCATGCAAATGTGATTCAACAGCGAGTTACTCGAGCACCTCGAAATATCATATTTAGAGGTATTTCCTTGTTCTTGACATTTCTATGTTTACTGTATTGCACGGAAAAAGGATCGGCAATCTATCTTGAACTTATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

27.26

Weight (kDa)

4.31

Isoelectric Point (pI)

67.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	317
AclWI	GGATC	2 cut(s)	464, 688
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	7 cut(s)	300, 328, 351, 368, 466, 587, 698
AhdI	GACNNNNNGTC	1 cut(s)	313
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	464, 688
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	607
BciVI	GTATCC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	38, 213
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	249, 527
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	312
BsaHI	GRCGYC	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	39, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	142, 264, 555
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	119, 555
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	40, 440
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	89, 428
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	19, 469, 680
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	118, 556
BspLI	GGNNCC	2 cut(s)	38, 213
BspPI	GGATC	2 cut(s)	464, 688
BspT107I	GGYRCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	19, 469, 680
BssNI	GRCGYC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	663
BstACI	GRCGYC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	105, 564
BstF5I	GGATG	3 cut(s)	142, 264, 555
BstKTI	GATC	3 cut(s)	22, 472, 683
BstMBI	GATC	3 cut(s)	19, 469, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 368, 423
BstNSI	RCATGY	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	142, 264, 555
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	242
CviAII	CATG	2 cut(s)	130, 572
CviJI	RGCY	5 cut(s)	161, 176, 362, 417, 492
CviKI_1	RGCY	5 cut(s)	161, 176, 362, 417, 492
DdeI	CTNAG	2 cut(s)	105, 564
DpnI	GATC	3 cut(s)	21, 471, 682
DpnII	GATC	3 cut(s)	19, 469, 680
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1105I	GACNNNNNGTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	118
FaeI	CATG	2 cut(s)	133, 575
FaiI	YATR	9 cut(s)	77, 131, 180, 420, 482, 503, 573, 620, 655
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	2 cut(s)	129, 571
FblI	GTMKAC	1 cut(s)	317
FokI	GGATG	3 cut(s)	149, 271, 542
FspBI	CTAG	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	40, 440
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	133, 575
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	8 cut(s)	43, 62, 109, 230, 287, 347, 434, 583
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	40, 440
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	4 cut(s)	187, 318, 529, 659
Hpy188I	TCNGA	6 cut(s)	82, 108, 258, 397, 523, 565
Hpy188III	TCNNGA	5 cut(s)	71, 113, 325, 643, 695
Hpy8I	GTNNAC	4 cut(s)	187, 318, 529, 659
Hpy99I	CGWCG	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	484, 518, 575, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 368, 423
HpyF3I	CTNAG	2 cut(s)	105, 564
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	133, 575
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	19, 469, 680
LweI	GCATC	2 cut(s)	249, 527
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	3 cut(s)	21, 471, 682
MboI	GATC	3 cut(s)	19, 469, 680
MboII	GAAGA	3 cut(s)	230, 282, 317
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	5 cut(s)	266, 351, 376, 485, 505
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	114, 236
MseI	TTAA	2 cut(s)	156, 186
MslI	CAYNNNNRTG	2 cut(s)	576, 652
MspI	CCGG	2 cut(s)	40, 440
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	89, 428
MwoI	GCNNNNNNNGC	3 cut(s)	259, 368, 423
NdeII	GATC	3 cut(s)	19, 469, 680
NlaIII	CATG	2 cut(s)	133, 575
NlaIV	GGNNCC	2 cut(s)	38, 213
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	600
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PctI	GAATGC	2 cut(s)	89, 428
PfeI	GAWTC	7 cut(s)	43, 109, 230, 287, 347, 434, 583
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	38, 213
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	600
RseI	CAYNNNNRTG	2 cut(s)	576, 652
SaqAI	TTAA	2 cut(s)	156, 186
Sau3AI	GATC	3 cut(s)	19, 469, 680
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	5 cut(s)	123, 186, 449, 610, 631
SfaNI	GCATC	2 cut(s)	249, 527
Sfr274I	CTCGAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	576, 652
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	5 cut(s)	266, 351, 376, 485, 505
SspMI	CTAG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	663
TaqI	TCGA	2 cut(s)	601, 610
TasI	AATT	5 cut(s)	266, 351, 376, 485, 505
TfiI	GAWTC	7 cut(s)	43, 109, 230, 287, 347, 434, 583
Tru1I	TTAA	2 cut(s)	156, 186
Tru9I	TTAA	2 cut(s)	156, 186
TspDTI	ATGAA	4 cut(s)	156, 435, 447, 518
TspGWI	ACGGA	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.