Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

46478888 .. 46482831

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG271600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATTACAATAATGACGATCAGCGTTGGGATTGGCACCGGAATCCTCGTATCCAAAAGGACTCCAATCACGACATATCTGAATGCCTGTGGAATGGAGTGCCTCAGAATCAAGAGGACCTTTCTTACATGTTGGATGATGAAACAACCCCAGTTAAGGCTTGTGGGGATTTGGCCTATGAGGTTAACCAAAGAGAAATGAGGGTTTCAGATAATAGAAACAAGGAACCAGAAGAACAGAGAGAATCTTTCGCGCAAGTAAAAAGGCGTCGGATGCTACAATTTGATACTGAAGCAATGGATTCTTCCCTTTCAAGTGAAGACTTATCGTCTACATTCTTGAAATCAAATGAGGGGGTTGATTCAATTGAGGAGGCTTTTGAAGCAACAAATTGGGTATCTGGGTTTTCAGAAAATACATCTGCCTCTGGCTATGAATGCCTAGATGAATCACCGGATAGGTGGATTGATGAGTGCTTCAATGATCCTGCTGATATGCAATTCAGCCCTGATGATATGAATTTCTCTGGTGCATCTGATGTTCATATTGACATTACAAAGTTGTGCGACATCCAACCTGAGTATCATGCAAATGTGATTCAACAGCGAATTACTCGAGCACCTCGAAATATCATATTTAGAGGTATTTCCTTGTTCTTGACATTTCTATGTTTACTGTATTGCATGGAAAAAGGATCAGCAATCTATCTTGAACTTATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.9

Weight (kDa)

4.34

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	254
AclWI	GGATC	2 cut(s)	479, 703
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	7 cut(s)	315, 343, 366, 383, 481, 602, 713
AhdI	GACNNNNNGTC	1 cut(s)	328
Alw21I	GWGCWC	1 cut(s)	622
AlwI	GGATC	2 cut(s)	479, 703
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	622
BciVI	GTATCC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	38, 228
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	264, 542
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	268
BsaWI	WCCGGW	2 cut(s)	39, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	303
BseGI	GGATG	3 cut(s)	142, 279, 570
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	119, 570
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	40, 455
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	89, 443
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	19, 484, 695
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	118, 571
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	38, 228
BspPI	GGATC	2 cut(s)	479, 703
BspT107I	GGYRCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	19, 484, 695
BssNI	GRCGYC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	678
BstACI	GRCGYC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	105, 579
BstF5I	GGATG	3 cut(s)	142, 279, 570
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	22, 487, 698
BstMBI	GATC	3 cut(s)	19, 484, 695
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 383, 438
BstNSI	RCATGY	1 cut(s)	133
BstUI	CGCG	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	142, 279, 570
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	257
CviAII	CATG	3 cut(s)	130, 587, 685
CviJI	RGCY	5 cut(s)	161, 176, 377, 432, 507
CviKI_1	RGCY	5 cut(s)	161, 176, 377, 432, 507
DdeI	CTNAG	2 cut(s)	105, 579
DpnI	GATC	3 cut(s)	21, 486, 697
DpnII	GATC	3 cut(s)	19, 484, 695
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1105I	GACNNNNNGTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	118
FaeI	CATG	3 cut(s)	133, 590, 688
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	3 cut(s)	129, 586, 684
FblI	GTMKAC	1 cut(s)	332
FokI	GGATG	3 cut(s)	149, 286, 557
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	40, 455
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	3 cut(s)	133, 590, 688
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	8 cut(s)	43, 62, 109, 245, 302, 362, 449, 598
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	40, 455
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	3 cut(s)	187, 333, 674
Hpy188I	TCNGA	6 cut(s)	82, 108, 211, 273, 412, 538
Hpy188III	TCNNGA	5 cut(s)	71, 113, 340, 658, 710
Hpy8I	GTNNAC	3 cut(s)	187, 333, 674
Hpy99I	CGWCG	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4V	TGCA	4 cut(s)	499, 533, 590, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 383, 438
HpyF3I	CTNAG	2 cut(s)	105, 579
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	3 cut(s)	133, 590, 688
HspAI	GCGC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	19, 484, 695
LweI	GCATC	2 cut(s)	264, 542
MaeI	CTAG	1 cut(s)	443
MalI	GATC	3 cut(s)	21, 486, 697
MboI	GATC	3 cut(s)	19, 484, 695
MboII	GAAGA	3 cut(s)	245, 297, 332
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	6 cut(s)	281, 366, 391, 500, 520, 609
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	3 cut(s)	114, 251, 598
MseI	TTAA	2 cut(s)	156, 186
MslI	CAYNNNNRTG	2 cut(s)	591, 667
MspI	CCGG	2 cut(s)	40, 455
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	2 cut(s)	89, 443
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	274, 383, 438
NdeII	GATC	3 cut(s)	19, 484, 695
NlaIII	CATG	3 cut(s)	133, 590, 688
NlaIV	GGNNCC	2 cut(s)	38, 228
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	615
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	2 cut(s)	89, 443
PfeI	GAWTC	7 cut(s)	43, 109, 245, 302, 362, 449, 598
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	38, 228
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	591, 667
SaqAI	TTAA	2 cut(s)	156, 186
Sau3AI	GATC	3 cut(s)	19, 484, 695
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	622
SetI	ASST	6 cut(s)	123, 186, 464, 580, 625, 646
SfaNI	GCATC	2 cut(s)	264, 542
Sfr274I	CTCGAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	118
SlaI	CTCGAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	591, 667
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	6 cut(s)	281, 366, 391, 500, 520, 609
SspMI	CTAG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	678
TaqI	TCGA	2 cut(s)	616, 625
TasI	AATT	6 cut(s)	281, 366, 391, 500, 520, 609
TfiI	GAWTC	7 cut(s)	43, 109, 245, 302, 362, 449, 598
Tru1I	TTAA	2 cut(s)	156, 186
Tru9I	TTAA	2 cut(s)	156, 186
TspDTI	ATGAA	5 cut(s)	156, 450, 462, 533, 533
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.