Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

30221103 .. 30224766

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1173900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATAAGCGGGGATTTCGATTTGGGGGATTGGATGGTGGTTATGCTGCTTATTGTGTGGCACTGGAATTGGAGAAGGAATAATCAGCTTACCCAAAAGGACTCCAACCATGACATGTCTGAATGCATGTGGAAGGGAGTGCCACAGAACGAAGAAGACATTTCCTACATGTTCGATGATGAAACAACACCAGTTAAGGCTTGTGGAGATTTGGCATATCATGTTAACTTCAGAGATGATAGGAGCAAGGAACCAGAACCAGAAGAACAGTCCTTCTCGCAAATAAAGAGGCGCAGGATGCTACAATTTGACACTCAAGATTTAGATCCTTCCCTTTCATGTGACGAGTTGTCATCTTCATTCTTGAATACAAATGAGAGGTTGGATTCAATTGAAGAGGCTTTTTCTGAAGCATCGCAATGGGTATCAGGGTTTGCAGGAAATTCTTCTTCATCTTGCTTTGAAGGCCTCGATCAGTCACCTGATGAGTGGATTGCTGAATGCTTCAACAATACCGATATGCATTTCAGCCCTGATGAGTTGAATTTCGCTGGGGCATCAGATGTTCAGCTTGACATTACAAAGTTATGTGACCTCCGACCTGAGCATGAAGTGAATGTGGTTCAACAACGAATTACCCGAACGCCTCAAAATGTTATTTTTAAAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGTTGGCTACTTCTGTGGCATATCCATTTGCCTTCATTAAACCCTCTGGTGCCCATGGAGATGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCACCACCTTCAAAAGCAAAGCAAAAACAGGAAGAACCTGCAGCTTACCCTACTTCGGCCTTTTCAGGGAAGCCTGTCGTTGGAAAAACTAAAATCCGCACTGAAGGAGGGAAAGGCAGCATTACAATTATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

35.51

Weight (kDa)

5.13

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	746
AciI	CCGC	4 cut(s)	9, 784, 790, 892
AclWI	GGATC	3 cut(s)	320, 781, 794
AcsI	RAATTY	2 cut(s)	442, 544
AcuI	CTGAAG	4 cut(s)	214, 429, 788, 918
AfiI	CCNNNNNNNGG	3 cut(s)	850, 861, 875
AflIII	ACRYGT	2 cut(s)	114, 168
AgsI	TTSAA	8 cut(s)	367, 390, 395, 464, 508, 544, 626, 807
AhdI	GACNNNNNGTC	1 cut(s)	349
AluBI	AGCT	3 cut(s)	88, 571, 839
AluI	AGCT	3 cut(s)	88, 571, 839
AlwI	GGATC	3 cut(s)	320, 781, 794
AoxI	GGCC	2 cut(s)	466, 852
ApeKI	GCWGC	3 cut(s)	46, 836, 912
ApoI	RAATTY	2 cut(s)	442, 544
Asp700I	GAANNNNTTC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	33, 848, 924
BccI	CCATC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	841
BisI	GCNGC	3 cut(s)	47, 837, 913
BlsI	GCNGC	3 cut(s)	48, 838, 914
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmiI	GGNNCC	3 cut(s)	252, 748, 788
BmsI	GCATC	3 cut(s)	288, 422, 566
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	850, 861, 875
Bse1I	ACTGG	2 cut(s)	68, 191
Bse3DI	GCAATG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	2 cut(s)	39, 303
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	850, 861, 875
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	68, 191
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	3 cut(s)	33, 848, 924
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	2 cut(s)	468, 854
BshNI	GGYRCC	1 cut(s)	746
BslI	CCNNNNNNNGG	3 cut(s)	850, 861, 875
BsmI	GAATGC	2 cut(s)	128, 506
BsnI	GGCC	2 cut(s)	468, 854
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	325, 472, 786
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	4 cut(s)	9, 784, 790, 892
BspANI	GGCC	2 cut(s)	468, 854
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	252, 748, 788
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	3 cut(s)	320, 781, 794
BspT107I	GGYRCC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	68, 191
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	3 cut(s)	325, 472, 786
BssT1I	CCWWGG	1 cut(s)	751
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	603, 696
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	2 cut(s)	39, 303
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	3 cut(s)	328, 475, 789
BstMBI	GATC	3 cut(s)	325, 472, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 465
BstNSI	RCATGY	3 cut(s)	118, 130, 172
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	751
BstV1I	GCAGC	3 cut(s)	33, 848, 924
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	325, 786
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	2 cut(s)	325, 786
BsuRI	GGCC	2 cut(s)	468, 854
BtgI	CCRYGG	1 cut(s)	751
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	39, 303
BtsIMutI	CAGTG	2 cut(s)	61, 894
BveI	ACCTGC	1 cut(s)	841
CfoI	GCGC	1 cut(s)	294
CviAII	CATG	8 cut(s)	110, 115, 127, 169, 221, 339, 608, 752
DdeI	CTNAG	2 cut(s)	603, 696
DpnI	GATC	3 cut(s)	327, 474, 788
DpnII	GATC	3 cut(s)	325, 472, 786
DraI	TTTAAA	1 cut(s)	664
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	390
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	751
Eco147I	AGGCCT	1 cut(s)	468
Eco57I	CTGAAG	4 cut(s)	214, 429, 788, 918
EcoT14I	CCWWGG	1 cut(s)	751
EcoT22I	ATGCAT	2 cut(s)	128, 525
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	8 cut(s)	113, 118, 130, 172, 224, 342, 611, 755
FatI	CATG	8 cut(s)	109, 114, 126, 168, 220, 338, 607, 751
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	3 cut(s)	47, 837, 913
FokI	GGATG	2 cut(s)	46, 310
Fsp4HI	GCNGC	3 cut(s)	47, 837, 913
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	47, 837, 913
GsaI	CCCAGC	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	468, 854
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	8 cut(s)	113, 118, 130, 172, 224, 342, 611, 755
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	101, 386, 688
HpaI	GTTAAC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	471
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	7 cut(s)	121, 233, 409, 562, 599, 687, 768
Hpy188III	TCNNGA	2 cut(s)	317, 364
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	9 cut(s)	69, 127, 283, 339, 458, 739, 763, 813, 893
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	126, 437, 523, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 465
HpyF3I	CTNAG	2 cut(s)	603, 696
Hsp92II	CATG	8 cut(s)	113, 118, 130, 172, 224, 342, 611, 755
HspAI	GCGC	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	325, 472, 786
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	33, 848, 924
LweI	GCATC	3 cut(s)	288, 422, 566
MaeIII	GTNAC	4 cut(s)	341, 477, 590, 760
MalI	GATC	3 cut(s)	327, 474, 788
MboI	GATC	3 cut(s)	325, 472, 786
MboII	GAAGA	8 cut(s)	164, 167, 275, 348, 407, 438, 441, 839
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	2 cut(s)	325, 786
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	7 cut(s)	67, 305, 390, 442, 544, 633, 921
MlyI	GAGTC	2 cut(s)	95, 682
MmeI	TCCRAC	4 cut(s)	129, 363, 622, 856
MnlI	CCTC	8 cut(s)	282, 372, 391, 479, 605, 657, 751, 896
Mph1103I	ATGCAT	2 cut(s)	128, 525
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	4 cut(s)	195, 225, 663, 735
MslI	CAYNNNNRTG	2 cut(s)	418, 756
MspA1I	CMGCKG	1 cut(s)	784
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	128, 506
MwoI	GCNNNNNNNGC	2 cut(s)	298, 465
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	3 cut(s)	325, 472, 786
NlaIII	CATG	8 cut(s)	113, 118, 130, 172, 224, 342, 611, 755
NlaIV	GGNNCC	3 cut(s)	252, 748, 788
NmuCI	GTSAC	3 cut(s)	341, 477, 590
NsiI	ATGCAT	2 cut(s)	128, 525
NspI	RCATGY	3 cut(s)	118, 130, 172
PceI	AGGCCT	1 cut(s)	468
PciI	ACATGT	2 cut(s)	114, 168
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	2 cut(s)	128, 506
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	48, 838, 914
PleI	GAGTC	2 cut(s)	95, 682
PpsI	GAGTC	2 cut(s)	95, 682
PscI	ACATGT	2 cut(s)	114, 168
PspFI	CCCAGC	1 cut(s)	551
PspN4I	GGNNCC	3 cut(s)	252, 748, 788
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	325, 786
RseI	CAYNNNNRTG	2 cut(s)	418, 756
SaqAI	TTAA	4 cut(s)	195, 225, 663, 735
SatI	GCNGC	3 cut(s)	47, 837, 913
Sau3AI	GATC	3 cut(s)	325, 472, 786
SchI	GAGTC	2 cut(s)	95, 682
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	3 cut(s)	288, 422, 566
SfcI	CTRYAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	2 cut(s)	418, 756
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	7 cut(s)	67, 305, 390, 442, 544, 633, 921
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	4 cut(s)	9, 784, 790, 892
StuI	AGGCCT	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	18, 174, 471
TasI	AATT	7 cut(s)	67, 305, 390, 442, 544, 633, 921
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	4 cut(s)	195, 225, 663, 735
Tru9I	TTAA	4 cut(s)	195, 225, 663, 735
TscAI	CASTG	2 cut(s)	68, 901
TseFI	GTSAC	3 cut(s)	341, 477, 590
TseI	GCWGC	3 cut(s)	46, 836, 912
Tsp45I	GTSAC	3 cut(s)	341, 477, 590
TspDTI	ATGAA	6 cut(s)	195, 327, 348, 441, 624, 721
TspRI	CASTG	2 cut(s)	68, 901
XapI	RAATTY	2 cut(s)	442, 544
XceI	RCATGY	3 cut(s)	118, 130, 172
XmnI	GAANNNNTTC	1 cut(s)	445
Zsp2I	ATGCAT	2 cut(s)	128, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.