Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

19007555 .. 19011647

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G201300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTACAATAATAACAATGAGCACTGGGATTGGCAAAGGAATAATCATAGTACCCCAAAGAACTCCAATTATGACATGCCTGAATACCTGTGGAATGGAGTGCCTCAGAATGAAGAAGATCTTTCGTACATGCTTGATGATGAAACAACACCAGTTAAGGCTTGTGGGGATTTGGCCTATCATGTTAACCATAGAGATAGTAGGACCAAGGAACCAGAAGAACCAAGGGAGTCTTTTTCACAAGTAAAGAGGCGACGGATGCTACAATTTGACACTCTAGCTATTGATCCTTCCCTCTCATGTGACGAGTTGTCATCTTCATTCCTGAAATCAAATGAGAGGGCTGATTCAATTGAAGAGGCTTTATCTGAAGCATCACAATGGGTATCGGGGTTTTCAGAAAATGCGTCTGCATCTGGCTATGAGTGCCTTGAGCAGTCACCTGATGAGTGGATTGCCGAATGCTTCAATGATACCGAGATGCATTTCAGCCCTGATGATTTGAATTTCTCTGGGGCTTCTGATGTTCAAATTGACATTGCAAAATTATGTGACGTCCGACCTGAGCATGAAGCAAATGTGATTCAACAGCGAGTCACCCGAACACCTCGAAATGTTGTTTTTAAAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGTTAGCTACTTCTGTGGCATATCCATTTGCCTTCATTAAACCCTCTGGGGCTCATGGAGATGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCACCACCTTCAAAATCAAAGCAAAAATATGAAGACCCTGCTGCTTACCCCACTTCGGCCTTTTCAGGGAAGCCTGTCGTTGGAAAAACTAAAATTCGCACTGAAGGTGGGAAAGGCAGCATTACAATAATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

34.07

Weight (kDa)

5.39

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	561
AciI	CCGC	2 cut(s)	748, 754
AclWI	GGATC	3 cut(s)	284, 745, 758
AcsI	RAATTY	2 cut(s)	508, 852
AcuI	CTGAAG	3 cut(s)	393, 752, 882
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	2 cut(s)	55, 131
AfiI	CCNNNNNNNGG	3 cut(s)	814, 825, 839
AgsI	TTSAA	7 cut(s)	354, 359, 472, 508, 533, 590, 771
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	2 cut(s)	284, 668
AluI	AGCT	2 cut(s)	284, 668
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	3 cut(s)	284, 745, 758
AoxI	GGCC	2 cut(s)	177, 816
ApeKI	GCWGC	2 cut(s)	800, 876
ApoI	RAATTY	2 cut(s)	508, 852
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	435, 592
AvaII	GGWCC	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	787, 888
BfaI	CTAG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	801, 877
BlsI	GCNGC	2 cut(s)	802, 878
Bme18I	GGWCC	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	216, 752
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	252, 386, 425, 474
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	798
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	210, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	814, 825, 839
Bse1I	ACTGG	2 cut(s)	32, 155
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	210, 227
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	814, 825, 839
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	122, 558
BseNI	ACTGG	2 cut(s)	32, 155
BseXI	GCAGC	2 cut(s)	787, 888
BshFI	GGCC	2 cut(s)	179, 818
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	814, 825, 839
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	179, 818
Bsp1286I	GDGCHC	2 cut(s)	27, 715
Bsp143I	GATC	3 cut(s)	121, 289, 750
BspACI	CCGC	2 cut(s)	748, 754
BspANI	GGCC	2 cut(s)	179, 818
BspCNI	CTCAG	2 cut(s)	121, 559
BspLI	GGNNCC	2 cut(s)	216, 752
BspPI	GGATC	3 cut(s)	284, 745, 758
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	32, 155
BssECI	CCNNGG	2 cut(s)	210, 227
BssMI	GATC	3 cut(s)	121, 289, 750
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	210, 227
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	108, 567, 660
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	124, 292, 753
BstMBI	GATC	3 cut(s)	121, 289, 750
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 429
BstNSI	RCATGY	2 cut(s)	82, 136
BstV1I	GCAGC	2 cut(s)	787, 888
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	2 cut(s)	121, 750
BstYI	RGATCY	2 cut(s)	121, 750
BsuRI	GGCC	2 cut(s)	179, 818
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	25, 858
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	54, 130
CviAII	CATG	6 cut(s)	79, 133, 185, 303, 572, 716
CviQI	GTAC	2 cut(s)	54, 130
DdeI	CTNAG	3 cut(s)	108, 567, 660
DpnI	GATC	3 cut(s)	123, 291, 752
DpnII	GATC	3 cut(s)	121, 289, 750
DraI	TTTAAA	1 cut(s)	628
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	210, 227
Eco24I	GRGCYC	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	207
Eco57I	CTGAAG	3 cut(s)	393, 752, 882
EcoT14I	CCWWGG	2 cut(s)	210, 227
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	715
ErhI	CCWWGG	2 cut(s)	210, 227
FaeI	CATG	6 cut(s)	82, 136, 188, 306, 575, 719
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 220, 252
FatI	CATG	6 cut(s)	78, 132, 184, 302, 571, 715
Fnu4HI	GCNGC	2 cut(s)	801, 877
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	2 cut(s)	801, 877
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	2 cut(s)	801, 877
HaeIII	GGCC	2 cut(s)	179, 818
HgaI	GACGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	82, 136, 188, 306, 575, 719
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	5 cut(s)	233, 350, 586, 597, 652
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	2 cut(s)	435, 592
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	7 cut(s)	111, 373, 403, 526, 563, 651, 732
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	5 cut(s)	303, 703, 727, 777, 857
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	416, 487, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 429
HpyF3I	CTNAG	3 cut(s)	108, 567, 660
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	6 cut(s)	82, 136, 188, 306, 575, 719
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	121, 289, 750
Lsp1109I	GCAGC	2 cut(s)	787, 888
LweI	GCATC	4 cut(s)	252, 386, 425, 474
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	5 cut(s)	305, 441, 554, 598, 724
MalI	GATC	3 cut(s)	123, 291, 752
MboI	GATC	3 cut(s)	121, 289, 750
MboII	GAAGA	6 cut(s)	128, 131, 233, 312, 371, 803
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	121, 750
MhlI	GDGCHC	2 cut(s)	27, 715
MluCI	AATT	7 cut(s)	70, 269, 354, 508, 534, 548, 852
MlyI	GAGTC	3 cut(s)	242, 606, 646
MmeI	TCCRAC	2 cut(s)	586, 820
MnlI	CCTC	7 cut(s)	117, 246, 308, 336, 355, 621, 715
Mph1103I	ATGCAT	1 cut(s)	489
MseI	TTAA	4 cut(s)	159, 189, 627, 699
MslI	CAYNNNNRTG	2 cut(s)	382, 720
MspA1I	CMGCKG	1 cut(s)	748
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	262, 429
NdeII	GATC	3 cut(s)	121, 289, 750
NlaIII	CATG	6 cut(s)	82, 136, 188, 306, 575, 719
NlaIV	GGNNCC	2 cut(s)	216, 752
NmuCI	GTSAC	4 cut(s)	305, 441, 554, 598
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	82, 136
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	350, 586
PkrI	GCNGC	2 cut(s)	802, 878
PleI	GAGTC	3 cut(s)	241, 605, 646
PpsI	GAGTC	3 cut(s)	241, 605, 646
PspN4I	GGNNCC	2 cut(s)	216, 752
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	121, 750
RsaI	GTAC	2 cut(s)	55, 131
RsaNI	GTAC	2 cut(s)	54, 130
RseI	CAYNNNNRTG	2 cut(s)	382, 720
SaqAI	TTAA	4 cut(s)	159, 189, 627, 699
SatI	GCNGC	2 cut(s)	801, 877
Sau3AI	GATC	3 cut(s)	121, 289, 750
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	3 cut(s)	242, 606, 646
SduI	GDGCHC	2 cut(s)	27, 715
SfaNI	GCATC	4 cut(s)	252, 386, 425, 474
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	2 cut(s)	382, 720
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	7 cut(s)	70, 269, 354, 508, 534, 548, 852
SsiI	CCGC	2 cut(s)	748, 754
SspMI	CTAG	1 cut(s)	281
StyI	CCWWGG	2 cut(s)	210, 227
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	613
TasI	AATT	7 cut(s)	70, 269, 354, 508, 534, 548, 852
TfiI	GAWTC	2 cut(s)	350, 586
Tru1I	TTAA	4 cut(s)	159, 189, 627, 699
Tru9I	TTAA	4 cut(s)	159, 189, 627, 699
TscAI	CASTG	2 cut(s)	32, 865
TseFI	GTSAC	4 cut(s)	305, 441, 554, 598
TseI	GCWGC	2 cut(s)	800, 876
Tsp45I	GTSAC	4 cut(s)	305, 441, 554, 598
TspDTI	ATGAA	6 cut(s)	129, 159, 312, 588, 685, 804
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	32, 865
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	508, 852
XceI	RCATGY	2 cut(s)	82, 136
XspI	CTAG	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.