Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

19452980 .. 19455994

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGATTACAATAATGACAATGAGCACTGGAATTGGAGAAGGAATAATCAGCGTACCCAAAAGGACTCCAACCATGACATGTCTGAATGCATGTGGAAGGGAGTGCCACAGAACGAAGAAGATATTTCCTACATGTTCGATGATGAAACAACACCAGTTAAGGCTTGTGGAGATTTGGCATATCATGTTAACTTCAAAGATGATAGGACCAAGGAACCAGAACCAGAAGAACAGTCCTCGCAAATAAAGAGGCGCAGGATGCTACAATTTGACACTCAAGATTTAGATCCTTCCCTTTCATGTGACGAGTTGTCATCTTCATTCTTGAATACAAATGAGAGGTTGGATTCAATTGAAGAGGCTTTTTCTGAAGCATCGCAATGGGTATCAGGGTTTGCAGGAAATTCATCTGCATCTTGCTTTGAAGGCCTTGATCAGTCACCTGATGAGTGGATTGCTGAATGCTTCAACAATACCGATATGCATTTCAGCCCTGATGAGTTGAATTTCTCTGGGGCATCGGATGTTCAGCTTGACGTTACAAAGTTATGTGACCTCCGACCTGAGCATGAAGTGAATGTGGTTCAACAACGAATTACCCGAACACCTCAAAATGTTATTTTTAAAGGTAGGAAGTCTTACATTCGGACTCCCACTAAGTTGGCTACTTCTGTGGCATATCCATTTGCCTTCATTAAACCCTCTGGTGCACATGGAGATGTAACTCTGAAGGACATAAACCAGCGGATCCGCACTCCACCACCTTCAAAATCAAAGCAAAAACAGGAAGACCCTGCTGCTTACCCTACTTCGGCCTTTTCAGGGAAGCCTGTTGTTGGAAAAACTAAAATCCGCACTGAAGGAGGGAAAGGCAGCATTACAATTATGAGAACCAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

34.05

Weight (kDa)

5.21

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	745, 751, 853
AclWI	GGATC	3 cut(s)	281, 742, 755
AcsI	RAATTY	2 cut(s)	403, 505
AcuI	CTGAAG	3 cut(s)	390, 749, 879
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	3 cut(s)	811, 822, 836
AflIII	ACRYGT	2 cut(s)	78, 132
AgsI	TTSAA	9 cut(s)	196, 328, 351, 356, 425, 469, 505, 587, 768
AhdI	GACNNNNNGTC	1 cut(s)	310
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
Alw21I	GWGCWC	2 cut(s)	27, 712
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	3 cut(s)	281, 742, 755
AoxI	GGCC	2 cut(s)	427, 813
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	2 cut(s)	797, 873
ApoI	RAATTY	2 cut(s)	403, 505
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	2 cut(s)	27, 712
BbvI	GCAGC	2 cut(s)	784, 885
BclI	TGATCA	1 cut(s)	433
BfaI	CTAG	1 cut(s)	901
BisI	GCNGC	2 cut(s)	798, 874
BlsI	GCNGC	2 cut(s)	799, 875
Bme18I	GGWCC	1 cut(s)	207
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	216, 749
BmsI	GCATC	4 cut(s)	249, 383, 422, 527
BpiI	GAAGAC	1 cut(s)	795
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	811, 822, 836
Bse1I	ACTGG	2 cut(s)	32, 155
Bse3DI	GCAATG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	264, 529
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	811, 822, 836
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	32, 155
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	784, 885
BshFI	GGCC	2 cut(s)	429, 815
BsiHKAI	GWGCWC	2 cut(s)	27, 712
BslI	CCNNNNNNNGG	3 cut(s)	811, 822, 836
BsmI	GAATGC	2 cut(s)	92, 467
BsnI	GGCC	2 cut(s)	429, 815
Bsp1286I	GDGCHC	2 cut(s)	27, 712
Bsp143I	GATC	3 cut(s)	286, 433, 747
BspACI	CCGC	3 cut(s)	745, 751, 853
BspANI	GGCC	2 cut(s)	429, 815
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	216, 749
BspPI	GGATC	3 cut(s)	281, 742, 755
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	32, 155
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	286, 433, 747
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	564, 657
BstF5I	GGATG	2 cut(s)	264, 529
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	3 cut(s)	289, 436, 750
BstMBI	GATC	3 cut(s)	286, 433, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 426
BstNSI	RCATGY	3 cut(s)	82, 94, 136
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	784, 885
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	2 cut(s)	286, 747
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	2 cut(s)	286, 747
BsuRI	GGCC	2 cut(s)	429, 815
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	264, 529
BtsIMutI	CAGTG	2 cut(s)	25, 855
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	8 cut(s)	74, 79, 91, 133, 185, 300, 569, 713
CviJI	RGCY	9 cut(s)	164, 362, 429, 492, 532, 665, 815, 829, 900
CviKI_1	RGCY	9 cut(s)	164, 362, 429, 492, 532, 665, 815, 829, 900
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	564, 657
DpnI	GATC	3 cut(s)	288, 435, 749
DpnII	GATC	3 cut(s)	286, 433, 747
DraI	TTTAAA	1 cut(s)	625
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	207
Eco57I	CTGAAG	3 cut(s)	390, 749, 879
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	2 cut(s)	92, 486
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	8 cut(s)	77, 82, 94, 136, 188, 303, 572, 716
FatI	CATG	8 cut(s)	73, 78, 90, 132, 184, 299, 568, 712
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	798, 874
FokI	GGATG	2 cut(s)	271, 536
Fsp4HI	GCNGC	2 cut(s)	798, 874
FspBI	CTAG	1 cut(s)	901
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	798, 874
HaeIII	GGCC	2 cut(s)	429, 815
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	8 cut(s)	77, 82, 94, 136, 188, 303, 572, 716
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	65, 347, 649
HpaI	GTTAAC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	190, 710
Hpy188I	TCNGA	6 cut(s)	85, 370, 523, 560, 648, 729
Hpy188III	TCNNGA	2 cut(s)	278, 325
Hpy8I	GTNNAC	2 cut(s)	190, 710
HpyAV	CCTTC	8 cut(s)	33, 91, 300, 419, 700, 724, 774, 854
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	5 cut(s)	90, 398, 413, 484, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 426
HpyF3I	CTNAG	2 cut(s)	564, 657
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	8 cut(s)	77, 82, 94, 136, 188, 303, 572, 716
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	286, 433, 747
Lsp1109I	GCAGC	2 cut(s)	784, 885
LweI	GCATC	4 cut(s)	249, 383, 422, 527
MaeI	CTAG	1 cut(s)	901
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	5 cut(s)	302, 438, 538, 551, 721
MalI	GATC	3 cut(s)	288, 435, 749
MboI	GATC	3 cut(s)	286, 433, 747
MboII	GAAGA	6 cut(s)	128, 131, 239, 309, 368, 800
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	2 cut(s)	286, 747
MhlI	GDGCHC	2 cut(s)	27, 712
MluCI	AATT	7 cut(s)	31, 266, 351, 403, 505, 594, 882
MlyI	GAGTC	2 cut(s)	59, 643
MmeI	TCCRAC	4 cut(s)	93, 324, 583, 817
MnlI	CCTC	8 cut(s)	243, 247, 333, 352, 566, 618, 712, 857
Mph1103I	ATGCAT	2 cut(s)	92, 486
MseI	TTAA	4 cut(s)	159, 189, 624, 696
MslI	CAYNNNNRTG	2 cut(s)	379, 717
MspA1I	CMGCKG	1 cut(s)	745
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	2 cut(s)	92, 467
MwoI	GCNNNNNNNGC	2 cut(s)	259, 426
NdeII	GATC	3 cut(s)	286, 433, 747
NlaIII	CATG	8 cut(s)	77, 82, 94, 136, 188, 303, 572, 716
NlaIV	GGNNCC	2 cut(s)	216, 749
NmuCI	GTSAC	3 cut(s)	302, 438, 551
NsiI	ATGCAT	2 cut(s)	92, 486
NspI	RCATGY	3 cut(s)	82, 94, 136
PceI	AGGCCT	1 cut(s)	429
PciI	ACATGT	2 cut(s)	78, 132
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PctI	GAATGC	2 cut(s)	92, 467
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	799, 875
PleI	GAGTC	2 cut(s)	59, 643
PpsI	GAGTC	2 cut(s)	59, 643
PscI	ACATGT	2 cut(s)	78, 132
PspN4I	GGNNCC	2 cut(s)	216, 749
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	286, 747
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	379, 717
SaqAI	TTAA	4 cut(s)	159, 189, 624, 696
SatI	GCNGC	2 cut(s)	798, 874
Sau3AI	GATC	3 cut(s)	286, 433, 747
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	59, 643
SduI	GDGCHC	2 cut(s)	27, 712
SetI	ASST	9 cut(s)	344, 445, 534, 540, 558, 565, 610, 631, 766
SfaNI	GCATC	4 cut(s)	249, 383, 422, 527
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	2 cut(s)	379, 717
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	7 cut(s)	31, 266, 351, 403, 505, 594, 882
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	3 cut(s)	745, 751, 853
SspMI	CTAG	1 cut(s)	901
StuI	AGGCCT	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	138
TasI	AATT	7 cut(s)	31, 266, 351, 403, 505, 594, 882
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	4 cut(s)	159, 189, 624, 696
Tru9I	TTAA	4 cut(s)	159, 189, 624, 696
TscAI	CASTG	2 cut(s)	32, 862
TseFI	GTSAC	3 cut(s)	302, 438, 551
TseI	GCWGC	2 cut(s)	797, 873
Tsp45I	GTSAC	3 cut(s)	302, 438, 551
TspDTI	ATGAA	6 cut(s)	159, 288, 309, 396, 585, 682
TspRI	CASTG	2 cut(s)	32, 862
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	403, 505
XceI	RCATGY	3 cut(s)	82, 94, 136
XspI	CTAG	1 cut(s)	901
Zsp2I	ATGCAT	2 cut(s)	92, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.