Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006170

Physical Location & Seq

Genomic Coordinates Forward (+)

19866231 .. 19868877

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGTCGAATTCGGAAGCGGGAGGATCGGCGGATTACGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCGTAACGAGAAGGCGGCGCCGGAGATTCTTCAGTACGAAGGAGCTCTTGTCGATAGAGCCAAAGAACAGATCGAATTAGTGGAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATATCAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTCAAGATAGAGAAGTTTATGTTCCACAACCTCAACTCAGAAGAAGCTGAAAGGCGACTTTCTGAGCAAGAGAAAGTGTTTGCTACCAGGTGTGCTGATGATTTGGCAAAGCATTTCGAAGAGACTGTACTGCTTAAGCTGCCCGAGAATTATCAGTCGGTTCTCAAGCAATCCCTTATAAGTGAAGTGGATGATATGGTGCCGCAGCCGCATTTGGATACCTTTGTTGTTTGTAGAAGCAAGAACTTTGTCTCCCTCAATCTATACGAAGAAGGAGAGAGCCCCGAGACTGTGGAGATGGAGCGCGGTGATCTCTACTTCATACGTTACAAGATTGTAAAAAGGGCAATCGAATCTGGCCAAATTGACTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLD5_C Sld5

Protein Analysis

220

Amino Acids

25.46

Weight (kDa)

4.65

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	71 - 136	6.3e-12	GINS complex protein helical bundle domain
SLD5_C	PF16922	165 - 220	5.3e-19	DNA replication complex GINS protein SLD5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49010 AT5G49010
fragaria_vesca	FvH4_4g13700 FvH4_4g13700 FvH4_4g13700 FvH4_4g20000 FvH4_4g20000
malus_domestica	MD13G1151200.v1.1 MD16G1152100.v1.1
prunus_persica	Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1
pyrus_communis	pycom13g12990 pycom16g12950
rosa_chinensis	RchiOBHm_Chr4g0425721 RchiOBHm_Chr6g0255221 RchiOBHm_Chr7g0210081
rosa_laevigata	RLG00000007344 RLG00000031854
rosa_multiflora	Rmu_sc0003958.1_g000010
rosa_roxburghii	Rroxscaffold_5G00367700
rosa_rugosa	Rorug04G0205400
rosa_samantha	Rh4AG262300 Rh4BG268600 Rh4CG279800 Rh4DG264200
rosa_wichuraiana	Rw4G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	103, 484
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	1 cut(s)	591
AciI	CCGC	6 cut(s)	20, 32, 101, 488, 494, 591
AclWI	GGATC	2 cut(s)	34, 200
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	5, 104
AfaI	GTAC	2 cut(s)	122, 414
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	76, 182
AjnI	CCWGG	1 cut(s)	371
AloI	GAACNNNNNNTCC	2 cut(s)	521, 553
AluBI	AGCT	4 cut(s)	70, 131, 332, 424
AluI	AGCT	4 cut(s)	70, 131, 332, 424
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	4 cut(s)	225, 401, 541, 566
AlwI	GGATC	2 cut(s)	34, 200
Ama87I	CYCGRG	2 cut(s)	428, 569
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	424, 490
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	106, 591
AsuHPI	GGTGA	1 cut(s)	605
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	2 cut(s)	428, 569
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	2 cut(s)	103, 484
BanII	GRGCYC	3 cut(s)	133, 250, 569
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	411, 502
BccI	CCATC	2 cut(s)	226, 577
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	496
BcoDI	GTCTC	4 cut(s)	225, 401, 541, 566
BfoI	RGCGCY	1 cut(s)	107
BfrI	CTTAAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	5 cut(s)	102, 425, 488, 491, 494
BlsI	GCNGC	5 cut(s)	103, 426, 489, 492, 495
Bme1390I	CCNGG	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	428, 569
BmiI	GGNNCC	2 cut(s)	105, 486
BmrFI	CCNGG	1 cut(s)	373
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	272, 434
BsaHI	GRCGYC	2 cut(s)	5, 104
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 521, 551
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	481
BseMII	CTCAG	4 cut(s)	274, 286, 336, 339
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	411, 502
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	645
BshNI	GGYRCC	2 cut(s)	103, 484
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	2 cut(s)	428, 569
BsiSI	CCGG	1 cut(s)	107
BsmAI	GTCTC	4 cut(s)	225, 401, 541, 566
BsnI	GGCC	1 cut(s)	645
BsoBI	CYCGRG	2 cut(s)	428, 569
Bsp119I	TTCGAA	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	133, 250, 569
Bsp143I	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
BspACI	CCGC	6 cut(s)	20, 32, 101, 488, 494, 591
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	4 cut(s)	273, 285, 335, 340
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	105, 486
BspPI	GGATC	2 cut(s)	34, 200
BspT104I	TTCGAA	1 cut(s)	402
BspT107I	GGYRCC	2 cut(s)	103, 484
BspTI	CTTAAG	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
BssNI	GRCGYC	2 cut(s)	5, 104
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	412, 577
Bst6I	CTCTTC	2 cut(s)	71, 399
BstACI	GRCGYC	2 cut(s)	5, 104
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	260, 272, 322, 348
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	591
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	106, 591
BstKTI	GATC	6 cut(s)	29, 159, 208, 266, 598, 660
BstMAI	GTCTC	4 cut(s)	225, 401, 541, 566
BstMBI	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 493
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	411, 502
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	481
CfoI	GCGC	2 cut(s)	106, 591
CsiI	ACCWGGT	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	121, 413
CviQI	GTAC	2 cut(s)	121, 413
DdeI	CTNAG	4 cut(s)	260, 272, 322, 348
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	6 cut(s)	28, 158, 207, 265, 597, 659
DpnII	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	71, 399
EarI	CTCTTC	2 cut(s)	71, 399
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	3 cut(s)	133, 250, 569
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	428, 569
EcoICRI	GAGCTC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	371
EcoT38I	GRGCYC	3 cut(s)	133, 250, 569
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaiI	YATR	9 cut(s)	189, 203, 226, 268, 305, 464, 482, 550, 608
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	5 cut(s)	102, 425, 488, 491, 494
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	3 cut(s)	133, 250, 569
Fsp4HI	GCNGC	5 cut(s)	102, 425, 488, 491, 494
GlaI	GCGC	2 cut(s)	105, 590
GluI	GCNGC	5 cut(s)	102, 425, 488, 491, 494
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	2 cut(s)	106, 591
Hin1I	GRCGYC	2 cut(s)	5, 104
Hin6I	GCGC	2 cut(s)	104, 589
HinP1I	GCGC	2 cut(s)	104, 589
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	112, 638
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	8 cut(s)	16, 61, 231, 263, 275, 325, 349, 662
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	91, 119, 551
HpyCH4III	ACNGT	2 cut(s)	412, 577
HpyCH4IV	ACGT	2 cut(s)	63, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 493
HpyF3I	CTNAG	4 cut(s)	260, 272, 322, 348
HpySE526I	ACGT	2 cut(s)	63, 610
Hsp92I	GRCGYC	2 cut(s)	5, 104
HspAI	GCGC	2 cut(s)	104, 589
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
LmnI	GCTCC	2 cut(s)	128, 586
LpnPI	CCDG	6 cut(s)	120, 197, 263, 358, 385, 627
Lsp1109I	GCAGC	2 cut(s)	411, 502
MabI	ACCWGGT	1 cut(s)	371
MaeII	ACGT	2 cut(s)	63, 610
MaeIII	GTNAC	2 cut(s)	89, 611
MalI	GATC	6 cut(s)	28, 158, 207, 265, 597, 659
MboI	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
MboII	GAAGA	7 cut(s)	88, 107, 182, 194, 338, 416, 566
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	3 cut(s)	133, 250, 569
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	5 cut(s)	10, 161, 177, 433, 648
MluNI	TGGCCA	1 cut(s)	645
Mly113I	GGCGCC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	17, 72, 219, 326, 551
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	373
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	424, 493
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
NlaIV	GGNNCC	2 cut(s)	105, 486
NspV	TTCGAA	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	112, 638
PkrI	GCNGC	5 cut(s)	103, 426, 489, 492, 495
PluTI	GGCGCC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	105, 486
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	122, 414
RsaNI	GTAC	2 cut(s)	121, 413
SacI	GAGCTC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	5 cut(s)	102, 425, 488, 491, 494
Sau3AI	GATC	6 cut(s)	26, 156, 205, 263, 595, 657
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	3 cut(s)	133, 250, 569
SetI	ASST	9 cut(s)	66, 72, 133, 318, 334, 377, 426, 509, 613
SexAI	ACCWGGT	1 cut(s)	371
SfoI	GGCGCC	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	402
SmlI	CTYRAG	3 cut(s)	287, 419, 449
SmoI	CTYRAG	3 cut(s)	287, 419, 449
Sse9I	AATT	5 cut(s)	10, 161, 177, 433, 648
SsiI	CCGC	6 cut(s)	20, 32, 101, 488, 494, 591
SspDI	GGCGCC	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	412, 577
TaiI	ACGT	2 cut(s)	66, 613
TaqI	TCGA	6 cut(s)	8, 53, 138, 159, 402, 636
TasI	AATT	5 cut(s)	10, 161, 177, 433, 648
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	3 cut(s)	104, 490, 496
TfiI	GAWTC	2 cut(s)	112, 638
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseI	GCWGC	2 cut(s)	424, 490
TspDTI	ATGAA	1 cut(s)	595
Vha464I	CTTAAG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.