Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006170

Physical Location & Seq

Genomic Coordinates Forward (+)

11886455 .. 11889050

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1151200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATTCGGGTTTGGACTCGGGCTTGGATTCGGGATCAACGGAGGATTACGAGACGGACGTGGAGCTTCTGAAGAGGGCGTGGCGGCAGGAGAAGTCCGCTCCGGAGATTCTTCAGTTCGAGAGTGCTTTGGTTCGGAGAATCGTAGAGCAGATCCAATTGATGGAAGAAACTGTGGAGGAGTTCACTGATAGTGGTATTGATCCGCTTACTGTGTCACTCTACCAGATGGATTTGGACAGGACGCAGTTCTTGTTGCGATCTTATTTCCGAATTCGTTTGCAGAAGATTGAGAAATACATGTTTCACATCCGGGATAATGCCGAAAGCCGTCTCTCTGAGAAGGAGAAGGTGTTTGTTGAAAGATGCTGTGCTGATTTGCAGACGCATCTTGAAAAGAGCGTTCTGTTGCAGTTGCCTTCTACTTATCAGTCTGTATTCCGTCAATCAAGTGAAAAGGAGACTGACATGGCTCATTTACCCAAGATCAGTTCCAAATGCTGTGCTCATGCGAGCCAGAGACCATTGGATGAACCGTTTGAAATGGAGCCTAATGTGTTATACTTTGTACGTTATAAAGCAGTGAAGAAATTCGTAGAGGAAGGGAAGATTGATTTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLD5_C Sld5

Protein Analysis

208

Amino Acids

24.27

Weight (kDa)

5.03

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	69 - 132	8.2e-10	GINS complex protein helical bundle domain
SLD5_C	PF16922	179 - 206	3.9e-07	DNA replication complex GINS protein SLD5 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49010 AT5G49010
fragaria_vesca	FvH4_4g13700 FvH4_4g13700 FvH4_4g13700 FvH4_4g20000 FvH4_4g20000
malus_domestica	MD13G1151200.v1.1 MD16G1152100.v1.1
prunus_persica	Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1
pyrus_communis	pycom13g12990 pycom16g12950
rosa_chinensis	RchiOBHm_Chr4g0425721 RchiOBHm_Chr6g0255221 RchiOBHm_Chr7g0210081
rosa_laevigata	RLG00000007344 RLG00000031854
rosa_multiflora	Rmu_sc0003958.1_g000010
rosa_roxburghii	Rroxscaffold_5G00367700
rosa_rugosa	Rorug04G0205400
rosa_samantha	Rh4AG262300 Rh4BG268600 Rh4CG279800 Rh4DG264200
rosa_wichuraiana	Rw4G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	85, 99, 206
AclWI	GGATC	3 cut(s)	43, 148, 197
AcsI	RAATTY	2 cut(s)	273, 590
AcuI	CTGAAG	2 cut(s)	92, 98
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	362, 395, 542
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	4 cut(s)	47, 338, 455, 514
AlwI	GGATC	3 cut(s)	43, 148, 197
Ama87I	CYCGRG	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	273, 590
Asp700I	GAANNNNTTC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	508
BccI	CCATC	2 cut(s)	157, 223
BceAI	ACGGC	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	4 cut(s)	47, 338, 455, 514
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	356, 397
BpuMI	CCSGG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	103
BseGI	GGATG	2 cut(s)	309, 535
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	104, 313
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	4 cut(s)	47, 338, 455, 514
BsmBI	CGTCTC	2 cut(s)	47, 338
Bso31I	GGTCTC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	35, 153, 202, 260, 486
BspACI	CCGC	3 cut(s)	85, 99, 206
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	43, 148, 197
BspTNI	GGTCTC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	101
BssMI	GATC	5 cut(s)	35, 153, 202, 260, 486
Bst4CI	ACNGT	3 cut(s)	175, 214, 537
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	309, 535
BstKTI	GATC	5 cut(s)	38, 156, 205, 263, 489
BstMAI	GTCTC	4 cut(s)	47, 338, 455, 514
BstMBI	GATC	5 cut(s)	35, 153, 202, 260, 486
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	309, 535
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	186, 588
Cac8I	GCNNGC	1 cut(s)	514
CseI	GACGC	2 cut(s)	253, 394
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	3 cut(s)	301, 469, 509
CviJI	RGCY	6 cut(s)	24, 67, 330, 473, 516, 550
CviKI_1	RGCY	6 cut(s)	24, 67, 330, 473, 516, 550
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	37, 155, 204, 262, 488
DpnII	GATC	5 cut(s)	35, 153, 202, 260, 486
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	92, 98
Eco88I	CYCGRG	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	47, 338
FaeI	CATG	3 cut(s)	304, 472, 512
FaiI	YATR	6 cut(s)	302, 470, 510, 562, 576, 619
FatI	CATG	3 cut(s)	300, 468, 508
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	2 cut(s)	296, 542
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
HapII	CCGG	2 cut(s)	104, 313
HgaI	GACGC	2 cut(s)	253, 394
Hin1II	CATG	3 cut(s)	304, 472, 512
HinfI	GANTC	5 cut(s)	5, 17, 29, 109, 141
HpaII	CCGG	2 cut(s)	104, 313
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	4 cut(s)	72, 138, 272, 340
Hpy188III	TCNNGA	4 cut(s)	33, 104, 121, 392
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	4 cut(s)	337, 343, 429, 596
HpyCH4III	ACNGT	3 cut(s)	175, 214, 537
HpyCH4IV	ACGT	2 cut(s)	60, 571
HpyCH4V	TGCA	3 cut(s)	283, 382, 412
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	60, 571
Hsp92II	CATG	3 cut(s)	304, 472, 512
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	35, 153, 202, 260, 486
LmnI	GCTCC	3 cut(s)	64, 106, 547
LpnPI	CCDG	6 cut(s)	74, 117, 226, 239, 326, 530
LweI	GCATC	2 cut(s)	356, 397
MaeII	ACGT	2 cut(s)	60, 571
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	5 cut(s)	37, 155, 204, 262, 488
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	5 cut(s)	35, 153, 202, 260, 486
MboII	GAAGA	6 cut(s)	85, 104, 179, 298, 598, 619
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	3 cut(s)	158, 273, 590
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	4 cut(s)	37, 69, 172, 592
MroI	TCCGGA	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	590
MspI	CCGG	2 cut(s)	104, 313
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	158
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	5 cut(s)	35, 153, 202, 260, 486
NlaIII	CATG	3 cut(s)	304, 472, 512
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	304
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	590
PfeI	GAWTC	4 cut(s)	5, 29, 109, 141
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	5 cut(s)	35, 153, 202, 260, 486
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	4 cut(s)	63, 69, 354, 574
SfaNI	GCATC	2 cut(s)	356, 397
Sse9I	AATT	3 cut(s)	158, 273, 590
SsiI	CCGC	3 cut(s)	85, 99, 206
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	175, 214, 537
TaiI	ACGT	2 cut(s)	63, 574
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	158, 273, 590
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	5, 29, 109, 141
TscAI	CASTG	2 cut(s)	193, 588
TseFI	GTSAC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	3 cut(s)	56, 71, 431
TspRI	CASTG	2 cut(s)	193, 588
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	273, 590
XceI	RCATGY	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.