Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006170

Physical Location & Seq

Genomic Coordinates Forward (+)

9199229 .. 9201792

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATTCGGGTTTGGACTCGGGCTTGGATTCGGGGTCAACGGAGGTCTACGAGACGGACGTGGAGCTTCTGAAGAGGGCGTGGCGGCAGGAGAAGGCCGCTCCGGAGATTCTTCAGTTCGAGAGTGCTTTGGTTCGGAGAATCGTAGAGCAGATCCAATTGATGGAAGAAACTGTAGAGGAGTTCACTGAGAGTGGTATTGATCCGCTTACCGTATCACTCTACCAGATGGATTTGGACAGGACTCAATTCTTGTTGAGATCTTATTACCGAATTCGTTTGCAGAAGATTGAGAAATACATGTTTCACATCCGGGATAATGCCGAAAGCCGTCTCTCTGATAAGGAGAAGGTGTTTGTTGAAAGATGCTGTGCTGATTTGCAGACGCATCTTGAAAAGAGCGTTCTGTTGCAGTTGCCTTCTACTTATCAGTCTGTATTCCGTCAATCAAGCGAAAAGGAGACTGACATGGTGCCGAGACCGCATTTGGATACATTTGTTGTCTGCAAAACCAAGTACTATCTTGGACATATCCAGCTCGAGGACAATGCAGATGGAGAATCAGATAGCAGTGCGAGCCAGAGACCATTGGACGAACCGTTTGAAATGGAGCCTAATGTGTTATACTTTGTACGTTATAAAGCAGTGAAGAAATTCGTAGATGAAGGGAAGATTGATTTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLD5_C Sld5

Protein Analysis

229

Amino Acids

26.68

Weight (kDa)

4.81

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49010 AT5G49010
fragaria_vesca	FvH4_4g13700 FvH4_4g13700 FvH4_4g13700 FvH4_4g20000 FvH4_4g20000
malus_domestica	MD13G1151200.v1.1 MD16G1152100.v1.1
prunus_persica	Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1 Prupe.1G115500_v2.0.a1
pyrus_communis	pycom13g12990 pycom16g12950
rosa_chinensis	RchiOBHm_Chr4g0425721 RchiOBHm_Chr6g0255221 RchiOBHm_Chr7g0210081
rosa_laevigata	RLG00000007344 RLG00000031854
rosa_multiflora	Rmu_sc0003958.1_g000010
rosa_roxburghii	Rroxscaffold_5G00367700
rosa_rugosa	Rorug04G0205400
rosa_samantha	Rh4AG262300 Rh4BG268600 Rh4CG279800 Rh4DG264200
rosa_wichuraiana	Rw4G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	4 cut(s)	85, 99, 206, 482
AclWI	GGATC	2 cut(s)	148, 197
AcsI	RAATTY	2 cut(s)	273, 653
AcuI	CTGAAG	2 cut(s)	92, 98
AfaI	GTAC	2 cut(s)	518, 633
AfiI	CCNNNNNNNGG	2 cut(s)	163, 541
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	362, 395, 605
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	2 cut(s)	67, 538
AluI	AGCT	2 cut(s)	67, 538
Alw26I	GTCTC	5 cut(s)	47, 338, 455, 472, 577
AlwI	GGATC	2 cut(s)	148, 197
Ama87I	CYCGRG	2 cut(s)	19, 539
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	273, 653
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
Asp700I	GAANNNNTTC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	314
AvaI	CYCGRG	2 cut(s)	19, 539
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BanI	GGYRCC	1 cut(s)	472
BccI	CCATC	3 cut(s)	157, 223, 548
BceAI	ACGGC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciVI	GTATCC	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	5 cut(s)	47, 338, 455, 472, 577
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	2 cut(s)	86, 99
BlsI	GCNGC	2 cut(s)	87, 100
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	2 cut(s)	19, 539
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	474, 612
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	356, 397
BpuMI	CCSGG	1 cut(s)	314
BsaI	GGTCTC	2 cut(s)	472, 577
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 541
BseAI	TCCGGA	1 cut(s)	103
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	163, 541
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	472
BsiHKCI	CYCGRG	2 cut(s)	19, 539
BsiSI	CCGG	2 cut(s)	104, 313
BslI	CCNNNNNNNGG	2 cut(s)	163, 541
BsmAI	GTCTC	5 cut(s)	47, 338, 455, 472, 577
BsmBI	CGTCTC	2 cut(s)	47, 338
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	2 cut(s)	472, 577
BsoBI	CYCGRG	2 cut(s)	19, 539
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	153, 202, 260
BspACI	CCGC	4 cut(s)	85, 99, 206, 482
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	474, 612
BspPI	GGATC	2 cut(s)	148, 197
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	472, 577
BsrBI	CCGCTC	1 cut(s)	101
BssMI	GATC	3 cut(s)	153, 202, 260
Bst4CI	ACNGT	3 cut(s)	175, 214, 600
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	156, 205, 263
BstMAI	GTCTC	5 cut(s)	47, 338, 455, 472, 577
BstMBI	GATC	3 cut(s)	153, 202, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 576
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	153, 260
BstYI	RGATCY	2 cut(s)	153, 260
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	2 cut(s)	577, 651
BtsIMutI	CAGTG	3 cut(s)	186, 577, 651
Cac8I	GCNNGC	1 cut(s)	577
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	517, 632
CviAII	CATG	2 cut(s)	301, 469
CviJI	RGCY	7 cut(s)	24, 67, 98, 330, 538, 579, 613
CviKI_1	RGCY	7 cut(s)	24, 67, 98, 330, 538, 579, 613
CviQI	GTAC	2 cut(s)	517, 632
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	155, 204, 262
DpnII	GATC	3 cut(s)	153, 202, 260
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	2 cut(s)	472, 577
Eco57I	CTGAAG	2 cut(s)	92, 98
Eco88I	CYCGRG	2 cut(s)	19, 539
EcoRI	GAATTC	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	47, 338
FaeI	CATG	2 cut(s)	304, 472
FaiI	YATR	6 cut(s)	302, 470, 531, 625, 639, 682
FatI	CATG	2 cut(s)	300, 468
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	86, 99
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	86, 99
GluI	GCNGC	2 cut(s)	86, 99
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	104, 313
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	304, 472
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	7 cut(s)	5, 17, 29, 109, 141, 244, 560
HpaII	CCGG	2 cut(s)	104, 313
Hpy166II	GTNNAC	3 cut(s)	39, 49, 186
Hpy188I	TCNGA	4 cut(s)	72, 138, 340, 565
Hpy188III	TCNNGA	3 cut(s)	104, 121, 392
Hpy8I	GTNNAC	3 cut(s)	39, 49, 186
HpyAV	CCTTC	4 cut(s)	88, 343, 429, 659
HpyCH4III	ACNGT	3 cut(s)	175, 214, 600
HpyCH4IV	ACGT	2 cut(s)	60, 634
HpyCH4V	TGCA	5 cut(s)	283, 382, 412, 507, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 576
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	60, 634
Hsp92II	CATG	2 cut(s)	304, 472
Kpn2I	TCCGGA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	153, 202, 260
LmnI	GCTCC	3 cut(s)	64, 106, 610
LpnPI	CCDG	7 cut(s)	74, 117, 226, 239, 326, 548, 593
LweI	GCATC	2 cut(s)	356, 397
MaeII	ACGT	2 cut(s)	60, 634
MalI	GATC	3 cut(s)	155, 204, 262
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	3 cut(s)	153, 202, 260
MboII	GAAGA	6 cut(s)	85, 104, 179, 298, 661, 682
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	153, 260
MluCI	AATT	4 cut(s)	158, 248, 273, 653
MlyI	GAGTC	2 cut(s)	11, 238
MnlI	CCTC	4 cut(s)	37, 69, 172, 535
MroI	TCCGGA	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	653
MspI	CCGG	2 cut(s)	104, 313
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	481, 576
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	153, 202, 260
NlaIII	CATG	2 cut(s)	304, 472
NlaIV	GGNNCC	2 cut(s)	474, 612
NmeAIII	GCCGAG	1 cut(s)	501
NspI	RCATGY	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	539
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	5 cut(s)	5, 29, 109, 141, 560
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	87, 100
PleI	GAGTC	2 cut(s)	11, 238
PpsI	GAGTC	2 cut(s)	11, 238
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	474, 612
PspXI	VCTCGAGB	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	153, 260
RsaI	GTAC	2 cut(s)	518, 633
RsaNI	GTAC	2 cut(s)	517, 632
SatI	GCNGC	2 cut(s)	86, 99
Sau3AI	GATC	3 cut(s)	153, 202, 260
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	2 cut(s)	11, 238
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	6 cut(s)	48, 63, 69, 354, 540, 637
SfaNI	GCATC	2 cut(s)	356, 397
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	158, 248, 273, 653
SsiI	CCGC	4 cut(s)	85, 99, 206, 482
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	175, 214, 600
TaiI	ACGT	2 cut(s)	63, 637
TaqI	TCGA	2 cut(s)	120, 540
TasI	AATT	4 cut(s)	158, 248, 273, 653
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	2 cut(s)	88, 101
TfiI	GAWTC	5 cut(s)	5, 29, 109, 141, 560
TscAI	CASTG	3 cut(s)	193, 577, 651
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	3 cut(s)	56, 71, 431
TspRI	CASTG	3 cut(s)	193, 577, 651
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	273, 653
XceI	RCATGY	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.