AT5G49610

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012734
Physical Location & Seq
Reverse (-)
20131274 .. 20132744
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49610.1

Sequence Viewer

Length: 1080 bp
ATGGATAACCAAAAAGGTGCTCTCTTTCCCGATGAGGTTATTCTCCAGATTCTTGCTAGATTACCTGTTAAATCTCTCTTCAGGTTCAAATCCGTTTGCAAATCATGGTACAGATTACCTTCTGACAAATATTTCACTTCCTTGTTCAATCAACTCTCTGTAAAAGAGCAATTGCTTGTGGCTGAAGTATCAGATTCTTCTAGTTTGATCTGTGTTGATAATCTGAGAGGTGTTTCTGAGTTATCATTGGATTTTGTTAGAGATAGGGTGAGGATTAGGGTTTCTTCTAATGGTTTGTTGTGTTGTTCAAGCATTCCTGAAAAGGGTGTTTACTATGTTTGTAATCCGTCGACTAGAGAGTATAGGAAATTGCCTAAGAGTCGAGAAAGACCTGTTACTCGGTTTTACCCTGATGGTGAGGCTACTCTTGTTGGTTTGGCTTGTGATTTGAGTAAGAACAAGTTTAATGTGGTGTTGGCTGGTTACCATAGGTCTTTTGGTCAGAGACCTGATGGGAGTTTCATTTGCTTGGTGTTTGATTCTGAGAGTAACAAATGGAGGAAGTTTGTTTCGGTGTTAGAAGAATGTAGTTTCACACACATGAGTAAGAACCAAGTGGTGTTTGTTAATGGGATGCTTCATTGGTTGATGAGTGGTTTGTGTTATATACTTGCGCTTGATGTTGAACATGATGTGTGGAGAAAGATTTCTTTGCCCGATGAGATTAGAATTGGGAATGGTGGTGGTAATCGGGTTTATCTCTTGGAATCCGATGGGTTTTTGTCGGTGATTCAGTTATCAGATGTATGGATGAAGATTTGGAAGATGAGTGAGTATGAGACTGAAACTTGGAGTGTTGTTGATAGCATAAGTTTAAGGTGTATTAAAGGCTTGGTACCTGGAATCTTCCCGATTTGTCAGACCGGTGAGTATGTTTTCTTGGCTACTCATAAACAGGTTTTGGTGTATCAAAGACGAAGTAAGTTATGGAAAGAGATGTTTTCTGTAAAAGGAAGCTCTTCTCTGCCTTTGTGGTTCTCTGCTCACGCCTTTCGCAGCACCATAGTACCCTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

359

Amino Acids

41.06

Weight (kDa)

8.92

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 46 7e-10 F-box domain
F-box-like PF12937 10 - 42 3.3e-08 F-box-like
FBA_3 PF08268 84 - 315 1.3e-11 F-box associated beta propeller domain
FBA_1 PF07734 92 - 325 1.1e-11 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 93 - 305 7.3e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49610
fragaria_vesca FvH4_4g20690
malus_domestica MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica Prupe.1G112700_v2.0.a1
pyrus_communis pycom13g12800 pycom16g12720
rosa_chinensis RchiOBHm_Chr4g0426111
rosa_laevigata RLG00000007318
rosa_multiflora Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii Rroxscaffold_5G00368100
rosa_rugosa Rorug04G0209100
rosa_samantha Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana Rw4G022950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 895
AccB1I GGYRCC 1 cut(s) 895
AccI GTMKAC 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 64, 204
AfaI GTAC 3 cut(s) 110, 897, 1068
AfiI CCNNNNNNNGG 1 cut(s) 323
AgeI ACCGGT 1 cut(s) 923
AgsI TTSAA 4 cut(s) 88, 148, 309, 686
AjnI CCWGG 1 cut(s) 898
AluBI AGCT 1 cut(s) 1017
AluI AGCT 1 cut(s) 1017
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 499, 833
ApeKI GCWGC 1 cut(s) 1056
AsiGI ACCGGT 1 cut(s) 923
Asp700I GAANNNNTTC 2 cut(s) 706, 1018
Asp718I GGTACC 1 cut(s) 895
AspLEI GCGC 1 cut(s) 676
AsuHPI GGTGA 4 cut(s) 280, 428, 799, 938
BaeI ACNNNNGTAYC 1 cut(s) 1050
BanI GGYRCC 1 cut(s) 895
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 1068
BccI CCATC 3 cut(s) 407, 506, 767
BciT130I CCWGG 1 cut(s) 900
BcoDI GTCTC 2 cut(s) 499, 833
BfaI CTAG 3 cut(s) 57, 201, 354
BisI GCNGC 1 cut(s) 1057
BlsI GCNGC 1 cut(s) 1058
Bme1390I CCNGG 1 cut(s) 900
BmiI GGNNCC 1 cut(s) 897
BmrFI CCNGG 1 cut(s) 900
BmsI GCATC 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 923
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 923
BseBI CCWGG 1 cut(s) 900
BseGI GGATG 2 cut(s) 639, 816
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 3 cut(s) 215, 228, 534
BseXI GCAGC 1 cut(s) 1068
BshNI GGYRCC 1 cut(s) 895
BshTI ACCGGT 1 cut(s) 923
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 924
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 499, 833
BsmI GAATGC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 207
BspCNI CTCAG 3 cut(s) 216, 229, 535
BspLI GGNNCC 1 cut(s) 897
BspQI GCTCTTC 1 cut(s) 1024
BspT107I GGYRCC 1 cut(s) 895
BspTNI GGTCTC 1 cut(s) 499
BsrFI RCCGGY 1 cut(s) 923
BssAI RCCGGY 1 cut(s) 923
BssMI GATC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 900
Bst6I CTCTTC 2 cut(s) 83, 1024
BstDEI CTNAG 4 cut(s) 224, 237, 375, 543
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 2 cut(s) 639, 816
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 2 cut(s) 499, 833
BstMBI GATC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 900
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 898
BstV1I GCAGC 1 cut(s) 1068
BtsCI GGATG 2 cut(s) 639, 816
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 923
Csp6I GTAC 3 cut(s) 109, 896, 1067
CspAI ACCGGT 1 cut(s) 923
CviAII CATG 3 cut(s) 105, 601, 689
CviJI RGCY 7 cut(s) 182, 422, 440, 479, 891, 944, 1017
CviKI_1 RGCY 7 cut(s) 182, 422, 440, 479, 891, 944, 1017
CviQI GTAC 3 cut(s) 109, 896, 1067
DdeI CTNAG 4 cut(s) 224, 237, 375, 543
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 83, 1024
EarI CTCTTC 2 cut(s) 83, 1024
Eco31I GGTCTC 1 cut(s) 499
Eco57I CTGAAG 2 cut(s) 64, 204
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 898
FaeI CATG 3 cut(s) 108, 604, 692
FatI CATG 3 cut(s) 104, 600, 688
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 1 cut(s) 1057
FokI GGATG 2 cut(s) 646, 823
Fsp4HI GCNGC 1 cut(s) 1057
FspBI CTAG 3 cut(s) 57, 201, 354
GlaI GCGC 1 cut(s) 675
GluI GCNGC 1 cut(s) 1057
GsuI CTGGAG 1 cut(s) 29
HapII CCGG 1 cut(s) 924
HhaI GCGC 1 cut(s) 676
Hin1II CATG 3 cut(s) 108, 604, 692
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 7 cut(s) 49, 194, 379, 539, 767, 790, 903
HpaII CCGG 1 cut(s) 924
HphI GGTGA 4 cut(s) 280, 428, 799, 938
Hpy166II GTNNAC 2 cut(s) 331, 351
Hpy188I TCNGA 9 cut(s) 124, 193, 225, 238, 504, 544, 772, 802, 921
Hpy188III TCNNGA 5 cut(s) 29, 46, 317, 383, 910
Hpy8I GTNNAC 2 cut(s) 331, 351
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 4 cut(s) 224, 237, 375, 543
Hsp92II CATG 3 cut(s) 108, 604, 692
HspAI GCGC 1 cut(s) 674
KpnI GGTACC 1 cut(s) 899
Kzo9I GATC 1 cut(s) 207
LguI GCTCTTC 1 cut(s) 1024
Lsp1109I GCAGC 1 cut(s) 1068
LweI GCATC 1 cut(s) 624
MaeI CTAG 3 cut(s) 57, 201, 354
MaeIII GTNAC 3 cut(s) 394, 482, 548
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 8 cut(s) 70, 189, 276, 593, 826, 835, 898, 1011
MfeI CAATTG 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 4 cut(s) 170, 368, 729, 1075
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 5 cut(s) 28, 221, 264, 412, 552
MroXI GAANNNNTTC 2 cut(s) 706, 1018
MseI TTAA 6 cut(s) 69, 465, 627, 875, 885, 1078
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 1 cut(s) 900
MunI CAATTG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 312
MvaI CCWGG 1 cut(s) 900
NdeII GATC 1 cut(s) 207
NlaIII CATG 3 cut(s) 108, 604, 692
NlaIV GGNNCC 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 1024
PctI GAATGC 1 cut(s) 312
PdmI GAANNNNTTC 2 cut(s) 706, 1018
PfeI GAWTC 6 cut(s) 49, 194, 539, 767, 790, 903
PinAI ACCGGT 1 cut(s) 923
PkrI GCNGC 1 cut(s) 1058
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 898
PspEI GGTNACC 1 cut(s) 482
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 1 cut(s) 897
RsaI GTAC 3 cut(s) 110, 897, 1068
RsaNI GTAC 3 cut(s) 109, 896, 1067
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 1024
SaqAI TTAA 6 cut(s) 69, 465, 627, 875, 885, 1078
SatI GCNGC 1 cut(s) 1057
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 900
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 599
Sse9I AATT 4 cut(s) 170, 368, 729, 1075
SspI AATATT 1 cut(s) 131
SspMI CTAG 3 cut(s) 57, 201, 354
StyD4I CCNGG 1 cut(s) 898
TaqI TCGA 2 cut(s) 350, 382
TasI AATT 4 cut(s) 170, 368, 729, 1075
TfiI GAWTC 6 cut(s) 49, 194, 539, 767, 790, 903
Tru1I TTAA 6 cut(s) 69, 465, 627, 875, 885, 1078
Tru9I TTAA 6 cut(s) 69, 465, 627, 875, 885, 1078
TseI GCWGC 1 cut(s) 1056
TspDTI ATGAA 3 cut(s) 511, 629, 827
TspGWI ACGGA 2 cut(s) 82, 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 350
XmnI GAANNNNTTC 2 cut(s) 706, 1018
XspI CTAG 3 cut(s) 57, 201, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.