pycom13g12800

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012734
Physical Location & Seq
Forward (+)
9020830 .. 9022036
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12800.3

Sequence Viewer

Length: 1035 bp
ATGCATCAAACTGCGTTCGATCGAACACCCATCTCGAATTCTTCACCCGAATTTGATCATGGATTCCCAAAGACGTGTTTTTTCCTGGACGAAGTCGTCCTCCAAATCCTTTCAAAACTGCCCATTAAGTCTCTCTTCAGGAGCAAAACTCTTTGTAAACTTTGGTACAGATTGGTTTCTGATGAGTATTTCATTCAATTGTACAATGAAACTTTTGCCAAGAACCCTATGCTATTGGTTCATGTTTCTGACTCGTTAGGATTGAAATCTGATTTGATTGTTGTGGACAATCAGATGGGTGTTTCCGAATTTTCGTTAGATTTCTTGAGGGATAGGGTTATGGTCAGAGCCTCTTGTAACGGCGTGTTGTGTTGCTCTAGCATTCCTGATAAGGGTGTTTACTATGTCTGTAATCCCATGACTCGAGAGTTTAAGTTGCTTCTGAAGAGTAGGGAGCAACATGTCACCCGATTTTATCCTGATGGTGAGGCAACCCTGGTGGGATTAGCTTGCAATTTGTCTACTCAGAAGTTTAATGTTGTTTTAGCGGGTTATAATCGTACTTTTGGTCATAGGAAGTTTGTTTCGTTTCACGGTGATCAATTCACCCATATGAATAAGAACCAAGTCGTGTTTGTTAATGGTGCACTTCATTGGTTGACTGGTAGTTCCTGTATTCTCACGTTCAATTTGGAGTATGATGTTTGGAGGAAGATGTCATTGCCAGAACAAGTGACTTGTGTATCTAGAAATAGGTTTTACTTGTTGGAGTCGAATGGTTGCCTGTCGGTGATCCAGATTTTAGATGCTTGGATGAAAATTTGGGTGTTGAAAGAGTACGAGAGACTTGTCCCGGGCATCTTCCTCATATGTCAGACTGGTGAATGTGTTTTCTTGGCAACCCACAAGCAGATATTGGTGTTTTATCGGAAGACTCGTGCGTGGAAAGAGATGTACTCTGTGAAGAACAACTCCACACTCCTATTGTGGCACTCGGCACATGCATTTCGGAGCACAATTTTTTCTTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

345

Amino Acids

39.84

Weight (kDa)

8.89

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49610
fragaria_vesca FvH4_4g20690
malus_domestica MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica Prupe.1G112700_v2.0.a1
pyrus_communis pycom13g12800 pycom16g12720
rosa_chinensis RchiOBHm_Chr4g0426111
rosa_laevigata RLG00000007318
rosa_multiflora Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii Rroxscaffold_5G00368100
rosa_rugosa Rorug04G0209100
rosa_samantha Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana Rw4G022950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 521
AciI CCGC 1 cut(s) 548
AclWI GGATC 1 cut(s) 787
AcsI RAATTY 4 cut(s) 37, 50, 308, 819
AcuI CTGAAG 2 cut(s) 121, 464
AfaI GTAC 5 cut(s) 167, 203, 562, 839, 956
AfiI CCNNNNNNNGG 1 cut(s) 392
AflIII ACRYGT 2 cut(s) 74, 460
AgsI TTSAA 5 cut(s) 114, 197, 265, 688, 832
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 2 cut(s) 84, 495
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw21I GWGCWC 2 cut(s) 649, 1016
Alw26I GTCTC 2 cut(s) 135, 838
Alw44I GTGCAC 1 cut(s) 645
AlwI GGATC 1 cut(s) 787
Ama87I CYCGRG 2 cut(s) 423, 853
ApaLI GTGCAC 1 cut(s) 645
ApoI RAATTY 4 cut(s) 37, 50, 308, 819
AsuC2I CCSGG 2 cut(s) 854, 855
AsuHPI GGTGA 7 cut(s) 36, 457, 497, 598, 608, 802, 893
AvaI CYCGRG 2 cut(s) 423, 853
BaeGI GKGCMC 1 cut(s) 649
BaeI ACNNNNGTAYC 2 cut(s) 726, 759
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 2 cut(s) 649, 1016
BccI CCATC 3 cut(s) 38, 289, 476
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 86, 497
BclI TGATCA 2 cut(s) 55, 598
BcnI CCSGG 2 cut(s) 854, 855
BcoDI GTCTC 2 cut(s) 135, 838
BfaI CTAG 2 cut(s) 378, 747
Bme1390I CCNGG 4 cut(s) 86, 497, 854, 855
BmeT110I CYCGRG 2 cut(s) 423, 853
BmgBI CACGTC 1 cut(s) 75
BmrFI CCNGG 4 cut(s) 86, 497, 854, 855
BmsI GCATC 3 cut(s) 13, 796, 867
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 941, 973
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 2 cut(s) 854, 855
BsaBI GATNNNNATC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 495, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 667, 883
Bse3DI GCAATG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 265
BseBI CCWGG 2 cut(s) 86, 497
BseDI CCNNGG 2 cut(s) 495, 853
BseGI GGATG 1 cut(s) 819
BseJI GATNNNNATC 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 2 cut(s) 667, 883
BseSI GKGCMC 1 cut(s) 649
Bsh1285I CGRYCG 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 649, 1016
BsiHKCI CYCGRG 2 cut(s) 423, 853
BsiSI CCGG 1 cut(s) 854
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 2 cut(s) 135, 838
BsmFI GGGAC 1 cut(s) 836
BsmI GAATGC 1 cut(s) 381
BsoBI CYCGRG 2 cut(s) 423, 853
Bsp1286I GDGCHC 2 cut(s) 649, 1016
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 4 cut(s) 19, 55, 598, 792
BspACI CCGC 1 cut(s) 548
BspCNI CTCAG 1 cut(s) 538
BspPI GGATC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 719
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 2 cut(s) 667, 883
BssECI CCNNGG 2 cut(s) 495, 853
BssMI GATC 4 cut(s) 19, 55, 598, 792
BssSI CACGAG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 2 cut(s) 86, 497
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 2 cut(s) 140, 440
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 819
BstKTI GATC 4 cut(s) 22, 58, 601, 795
BstMAI GTCTC 2 cut(s) 135, 838
BstMBI GATC 4 cut(s) 19, 55, 598, 792
BstMCI CGRYCG 1 cut(s) 22
BstNI CCWGG 2 cut(s) 86, 497
BstNSI RCATGY 2 cut(s) 464, 1004
BstSCI CCNGG 4 cut(s) 84, 495, 852, 853
BstSLI GKGCMC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 938
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 819
Cac8I GCNNGC 1 cut(s) 511
Cfr9I CCCGGG 1 cut(s) 853
Csp6I GTAC 5 cut(s) 166, 202, 561, 838, 955
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 5 cut(s) 59, 242, 418, 461, 1001
CviJI RGCY 2 cut(s) 350, 509
CviKI_1 RGCY 2 cut(s) 350, 509
CviQI GTAC 5 cut(s) 166, 202, 561, 838, 955
DdeI CTNAG 1 cut(s) 525
DpnI GATC 4 cut(s) 21, 57, 600, 794
DpnII GATC 4 cut(s) 19, 55, 598, 792
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 140, 440
EarI CTCTTC 2 cut(s) 140, 440
Eco57I CTGAAG 2 cut(s) 121, 464
Eco88I CYCGRG 2 cut(s) 423, 853
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 84, 495
EcoT22I ATGCAT 2 cut(s) 6, 1006
FaeI CATG 5 cut(s) 62, 245, 421, 464, 1004
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 836
FatI CATG 5 cut(s) 58, 241, 417, 460, 1000
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 2 cut(s) 612, 869
FbaI TGATCA 2 cut(s) 55, 598
FblI GTMKAC 1 cut(s) 521
FokI GGATG 1 cut(s) 826
FspBI CTAG 2 cut(s) 378, 747
HapII CCGG 1 cut(s) 854
Hin1II CATG 5 cut(s) 62, 245, 421, 464, 1004
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 5 cut(s) 63, 251, 421, 770, 934
HpaII CCGG 1 cut(s) 854
HphI GGTGA 7 cut(s) 36, 457, 497, 598, 608, 802, 893
Hpy166II GTNNAC 6 cut(s) 158, 286, 400, 522, 647, 660
Hpy188III TCNNGA 8 cut(s) 34, 139, 325, 386, 425, 479, 747, 796
Hpy8I GTNNAC 6 cut(s) 158, 286, 400, 522, 647, 660
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 2 cut(s) 74, 683
HpyCH4V TGCA 4 cut(s) 4, 513, 647, 1004
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 2 cut(s) 74, 683
Hsp92II CATG 5 cut(s) 62, 245, 421, 464, 1004
Ksp22I TGATCA 2 cut(s) 55, 598
Kzo9I GATC 4 cut(s) 19, 55, 598, 792
LmnI GCTCC 3 cut(s) 141, 454, 1011
LweI GCATC 3 cut(s) 13, 796, 867
MaeI CTAG 2 cut(s) 378, 747
MaeII ACGT 2 cut(s) 74, 683
MaeIII GTNAC 3 cut(s) 356, 463, 733
MalI GATC 4 cut(s) 21, 57, 600, 794
MboI GATC 4 cut(s) 19, 55, 598, 792
MboII GAAGA 7 cut(s) 33, 127, 457, 724, 853, 943, 976
MfeI CAATTG 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 649, 1016
MluCI AATT 9 cut(s) 37, 50, 197, 308, 514, 602, 688, 819, 1017
MlyI GAGTC 4 cut(s) 245, 415, 779, 928
MmeI TCCRAC 1 cut(s) 747
MnlI CCTC 6 cut(s) 110, 321, 361, 481, 702, 875
Mph1103I ATGCAT 2 cut(s) 6, 1006
MseI TTAA 4 cut(s) 126, 432, 534, 639
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 1 cut(s) 854
MspR9I CCNGG 4 cut(s) 86, 497, 854, 855
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 2 cut(s) 86, 497
NciI CCSGG 2 cut(s) 854, 855
NdeI CATATG 2 cut(s) 612, 869
NdeII GATC 4 cut(s) 19, 55, 598, 792
NlaIII CATG 5 cut(s) 62, 245, 421, 464, 1004
NmeAIII GCCGAG 1 cut(s) 974
NmuCI GTSAC 2 cut(s) 463, 733
NsiI ATGCAT 2 cut(s) 6, 1006
NspI RCATGY 2 cut(s) 464, 1004
PaeR7I CTCGAG 1 cut(s) 423
PciI ACATGT 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 934
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 84
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 4 cut(s) 245, 415, 778, 928
PpsI GAGTC 4 cut(s) 245, 415, 778, 928
PscI ACATGT 1 cut(s) 460
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 84, 495
PspGI CCWGG 2 cut(s) 84, 495
PsyI GACNNNGTC 1 cut(s) 92
PvuI CGATCG 1 cut(s) 22
RsaI GTAC 5 cut(s) 167, 203, 562, 839, 956
RsaNI GTAC 5 cut(s) 166, 202, 561, 838, 955
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 4 cut(s) 126, 432, 534, 639
Sau3AI GATC 4 cut(s) 19, 55, 598, 792
SchI GAGTC 4 cut(s) 245, 415, 779, 928
ScrFI CCNGG 4 cut(s) 86, 497, 854, 855
SduI GDGCHC 2 cut(s) 649, 1016
SetI ASST 4 cut(s) 77, 511, 686, 758
SfaNI GCATC 3 cut(s) 13, 796, 867
Sfr274I CTCGAG 1 cut(s) 423
SlaI CTCGAG 1 cut(s) 423
SmaI CCCGGG 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 325, 423
SmoI CTYRAG 2 cut(s) 325, 423
Sse9I AATT 9 cut(s) 37, 50, 197, 308, 514, 602, 688, 819, 1017
SsiI CCGC 1 cut(s) 548
SspMI CTAG 2 cut(s) 378, 747
StyD4I CCNGG 4 cut(s) 84, 495, 852, 853
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 2 cut(s) 77, 686
TaqI TCGA 5 cut(s) 18, 22, 35, 424, 773
TasI AATT 9 cut(s) 37, 50, 197, 308, 514, 602, 688, 819, 1017
TatI WGTACW 2 cut(s) 201, 954
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 4 cut(s) 126, 432, 534, 639
Tru9I TTAA 4 cut(s) 126, 432, 534, 639
TseFI GTSAC 2 cut(s) 463, 733
Tsp45I GTSAC 2 cut(s) 463, 733
TspDTI ATGAA 6 cut(s) 181, 222, 230, 629, 641, 830
TspMI CCCGGG 1 cut(s) 853
Tth111I GACNNNGTC 1 cut(s) 92
VneI GTGCAC 1 cut(s) 645
XapI RAATTY 4 cut(s) 37, 50, 308, 819
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 2 cut(s) 464, 1004
XhoI CTCGAG 1 cut(s) 423
XmaI CCCGGG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 2 cut(s) 378, 747
Zsp2I ATGCAT 2 cut(s) 6, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.