Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375493.1

Orthogroup ID

OG0012734

Physical Location & Seq

Genomic Coordinates Reverse (-)

133 .. 1047

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgttattggttgaggtctctgactcgtctgggttgaaatcgagtttgatttgtgttgatgatcagaagggtgtttgtgaatttgacttggatttcttgaaggacagggttaaggtcagggcatcgtgtaatggtttgttgtgctgctctagtatacctgataagggtgtttactatgtgtgtaaccctatgactcgggagtttaagctgcttcccaagagtagggagaggaatgtgactcggttttaccctgatggtgaggccactctagtcggattggcttgcaatttggcttctcagaagtttaatgtggttttagccggctatcaccgcacttttggtcataggccggatgggacttttaagtgtatgatatatgattctgagacgaacaaatggaggaagtttattactttccaggatgatcagtttagccatatgaataagaaccaggttgtgtttgtgaatggtgcgctgcattggttgacgggtggtgcttgttcttgtatacttgtgcttgatttggagtacgatatgtggaggaagatgtcattgcctgatgaattgaactgtggaatggggaatcggttttacttgttggagtcggatggatgcttgtctgtgatacagatttcggatgcttggatgaagatttgggtgttgaaagattatgtgagagaggagtggcgtttggttgatactgtcagtctgagatgtattaaaggacttgttccagggattttccccatatgtcagactggtgagtatgttctgttagcaacacataagcagatattggtgtttcatcgcaaaagtcgtgtgtggaaagagatgtactctgtgaagaacagctctacactcccattgtggtactcagctcatgcatttcggagcacgatttcttcttgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

304

Amino Acids

34.86

Weight (kDa)

8.44

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49610
fragaria_vesca	FvH4_4g20690
malus_domestica	MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica	Prupe.1G112700_v2.0.a1
pyrus_communis	pycom13g12800 pycom16g12720
rosa_chinensis	RchiOBHm_Chr4g0426111
rosa_laevigata	RLG00000007318
rosa_multiflora	Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368100
rosa_rugosa	Rorug04G0209100
rosa_samantha	Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana	Rw4G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	154, 508
AciI	CCGC	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	3 cut(s)	530, 836, 872
AfiI	CCNNNNNNNGG	2 cut(s)	164, 222
AgsI	TTSAA	4 cut(s)	37, 100, 568, 664
AjnI	CCWGG	3 cut(s)	417, 450, 733
AluBI	AGCT	3 cut(s)	208, 852, 878
AluI	AGCT	3 cut(s)	208, 852, 878
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	2 cut(s)	22, 380
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	261, 347
ApeKI	GCWGC	3 cut(s)	144, 208, 475
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	3 cut(s)	269, 320, 773
AvaI	CYCGRG	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	3 cut(s)	131, 195, 462
BccI	CCATC	3 cut(s)	248, 347, 602
BciT130I	CCWGG	3 cut(s)	419, 452, 735
BclI	TGATCA	2 cut(s)	61, 424
BcoDI	GTCTC	2 cut(s)	22, 380
BfaI	CTAG	2 cut(s)	150, 269
BisI	GCNGC	3 cut(s)	145, 209, 476
BlsI	GCNGC	3 cut(s)	146, 210, 477
Bme1390I	CCNGG	3 cut(s)	419, 452, 735
BmeT110I	CYCGRG	1 cut(s)	195
BmrFI	CCNGG	3 cut(s)	419, 452, 735
BmsI	GCATC	3 cut(s)	131, 602, 628
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 222
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	419, 452, 735
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	6 cut(s)	358, 427, 613, 617, 643, 651
BseLI	CCNNNNNNNGG	2 cut(s)	164, 222
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	4 cut(s)	311, 375, 701, 888
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	131, 195, 462
BshFI	GGCC	2 cut(s)	263, 349
BsiHKAI	GWGCWC	1 cut(s)	896
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	321, 350
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	164, 222
BsmAI	GTCTC	2 cut(s)	22, 380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	263, 349
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp143I	GATC	2 cut(s)	61, 424
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	263, 349
BspCNI	CTCAG	4 cut(s)	310, 376, 702, 887
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	763
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	61, 424
BssNAI	GTATAC	2 cut(s)	155, 509
Bst1107I	GTATAC	2 cut(s)	155, 509
Bst2UI	CCWGG	3 cut(s)	419, 452, 735
Bst4CI	ACNGT	2 cut(s)	572, 703
BstC8I	GCNNGC	2 cut(s)	283, 322
BstDEI	CTNAG	4 cut(s)	297, 384, 710, 874
BstF5I	GGATG	6 cut(s)	358, 427, 613, 617, 643, 651
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	64, 427
BstMAI	GTCTC	2 cut(s)	22, 380
BstMBI	GATC	2 cut(s)	61, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	3 cut(s)	419, 452, 735
BstSCI	CCNGG	3 cut(s)	417, 450, 733
BstV1I	GCAGC	3 cut(s)	131, 195, 462
BstZ17I	GTATAC	2 cut(s)	155, 509
BsuRI	GGCC	2 cut(s)	263, 349
BtgZI	GCGATG	1 cut(s)	791
BtsCI	GGATG	6 cut(s)	358, 427, 613, 617, 643, 651
Cac8I	GCNNGC	2 cut(s)	283, 322
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	3 cut(s)	529, 835, 871
CviAII	CATG	1 cut(s)	881
CviQI	GTAC	3 cut(s)	529, 835, 871
DdeI	CTNAG	4 cut(s)	297, 384, 710, 874
DpnI	GATC	2 cut(s)	63, 426
DpnII	GATC	2 cut(s)	61, 424
Eco31I	GGTCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	417, 450, 733
EcoT22I	ATGCAT	1 cut(s)	886
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	1 cut(s)	884
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	1 cut(s)	880
FauNDI	CATATG	2 cut(s)	438, 749
FbaI	TGATCA	2 cut(s)	61, 424
FblI	GTMKAC	2 cut(s)	154, 508
Fnu4HI	GCNGC	3 cut(s)	145, 209, 476
FokI	GGATG	6 cut(s)	365, 434, 620, 624, 650, 658
Fsp4HI	GCNGC	3 cut(s)	145, 209, 476
FspBI	CTAG	2 cut(s)	150, 269
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	3 cut(s)	145, 209, 476
HaeIII	GGCC	2 cut(s)	263, 349
HapII	CCGG	2 cut(s)	321, 350
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	1 cut(s)	884
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	6 cut(s)	23, 193, 238, 380, 583, 602
HpaII	CCGG	2 cut(s)	321, 350
HphI	GGTGA	3 cut(s)	269, 320, 773
Hpy166II	GTNNAC	4 cut(s)	155, 172, 486, 509
Hpy188III	TCNNGA	2 cut(s)	97, 197
Hpy8I	GTNNAC	4 cut(s)	155, 172, 486, 509
HpyAV	CCTTC	2 cut(s)	61, 94
HpyCH4III	ACNGT	2 cut(s)	572, 703
HpyCH4V	TGCA	3 cut(s)	285, 478, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	4 cut(s)	297, 384, 710, 874
Hsp92II	CATG	1 cut(s)	884
HspAI	GCGC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Ksp22I	TGATCA	2 cut(s)	61, 424
Kzo9I	GATC	2 cut(s)	61, 424
LmnI	GCTCC	1 cut(s)	891
Lsp1109I	GCAGC	3 cut(s)	131, 195, 462
LweI	GCATC	3 cut(s)	131, 602, 628
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	2 cut(s)	150, 269
MaeIII	GTNAC	2 cut(s)	182, 235
MalI	GATC	2 cut(s)	63, 426
MboI	GATC	2 cut(s)	61, 424
MboII	GAAGA	4 cut(s)	556, 661, 856, 894
MhlI	GDGCHC	1 cut(s)	896
MluCI	AATT	3 cut(s)	80, 286, 563
MlyI	GAGTC	4 cut(s)	17, 187, 232, 611
MmeI	TCCRAC	3 cut(s)	253, 579, 585
MnlI	CCTC	6 cut(s)	7, 222, 253, 393, 534, 673
Mph1103I	ATGCAT	1 cut(s)	886
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	6 cut(s)	111, 204, 306, 363, 720, 913
MspI	CCGG	2 cut(s)	321, 350
MspR9I	CCNGG	3 cut(s)	419, 452, 735
MvaI	CCWGG	3 cut(s)	419, 452, 735
MwoI	GCNNNNNNNGC	1 cut(s)	330
NaeI	GCCGGC	1 cut(s)	322
NdeI	CATATG	2 cut(s)	438, 749
NdeII	GATC	2 cut(s)	61, 424
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	884
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	886
PcsI	WCGNNNNNNNCGW	1 cut(s)	814
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	380, 583
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	3 cut(s)	146, 210, 477
PleI	GAGTC	4 cut(s)	17, 187, 232, 610
PpsI	GAGTC	4 cut(s)	17, 187, 232, 610
Psp6I	CCWGG	3 cut(s)	417, 450, 733
PspGI	CCWGG	3 cut(s)	417, 450, 733
RsaI	GTAC	3 cut(s)	530, 836, 872
RsaNI	GTAC	3 cut(s)	529, 835, 871
SaqAI	TTAA	6 cut(s)	111, 204, 306, 363, 720, 913
SatI	GCNGC	3 cut(s)	145, 209, 476
Sau3AI	GATC	2 cut(s)	61, 424
SchI	GAGTC	4 cut(s)	17, 187, 232, 611
ScrFI	CCNGG	3 cut(s)	419, 452, 735
SduI	GDGCHC	1 cut(s)	896
SetI	ASST	7 cut(s)	18, 117, 160, 210, 456, 854, 880
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	131, 602, 628
Sse9I	AATT	3 cut(s)	80, 286, 563
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	150, 269
StyD4I	CCNGG	3 cut(s)	417, 450, 733
TaaI	ACNGT	2 cut(s)	572, 703
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	80, 286, 563
TatI	WGTACW	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	380, 583
Tru1I	TTAA	6 cut(s)	111, 204, 306, 363, 720, 913
Tru9I	TTAA	6 cut(s)	111, 204, 306, 363, 720, 913
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	144, 208, 475
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	455, 576, 662, 794
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	2 cut(s)	154, 508
XspI	CTAG	2 cut(s)	150, 269
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.