Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0012734

Physical Location & Seq

Genomic Coordinates Forward (+)

8712 .. 9797

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgaattcgcaaagacatggctttttcccggacgaagtcgtccttcaaattctttcgaggctgccgattaagtcacttttcaggagcaaaactgtgtgtaaactttggtatagattggtttctgataagtatttcattcagctgtacaatgaattggctgtgaagaactctatgttattggttgaggtctctgactcgtctgggttgaaatcgagtttgatttgtgttgatgatcagaagggtgtttgtgaatttgacttggatttcttgaaggacagggttaaggtcagggcatcgtgtaatggtttgttgtgctgctctagtatacctgataagggtgtttactatgtgtgtaaccctatgactcgggagtttaagctgcttcccaagagtagggagaggaatgtgactcggttttaccctgatggtgaggccactctagtcggattggcttgcaatttggcttctcagaagtttaatgtggttttagccggctatcaccgcacttttggtcataggccggatgggacttttaagtgtatgatatatgattctgagacgaacaaatggaggaagtttattactttccaggatgatcagtttagccatatgaataagaaccaggttgtgtttgtgaatggtgcgctgcattggttgacgggtggtgcttgttcttgtatacttgtgcttgatttggagtacgatatgtggaggaagatgtcattgcctgatgaattgaactgtggaatggggaatcggttttacttgttggagtcggatggatgcttgtctgtgatacagatttcggatgcttggatgaagatttgggtgttgaaagattatgtgagagaggagtggcgtttggttgatactgtcagtctgagatgtattaaaggacttgttccagggattttccccatatgtcagactggtgagtatgttctgttagcaacacataagcagatattggtgtttcatcgcaaaagtcgtgtgtggaaagagatgtactctgtgaagaacagctctacactcccattgtggtactcagctcatgcatttcggagcacgatttcttcttgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_3

Protein Analysis

361

Amino Acids

41.66

Weight (kDa)

8.84

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49610
fragaria_vesca	FvH4_4g20690
malus_domestica	MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica	Prupe.1G112700_v2.0.a1
pyrus_communis	pycom13g12800 pycom16g12720
rosa_chinensis	RchiOBHm_Chr4g0426111
rosa_laevigata	RLG00000007318
rosa_multiflora	Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368100
rosa_rugosa	Rorug04G0209100
rosa_samantha	Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana	Rw4G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	2 cut(s)	325, 679
AciI	CCGC	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	4, 48, 251
AfaI	GTAC	4 cut(s)	146, 701, 1007, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	335, 393
AgsI	TTSAA	5 cut(s)	47, 208, 271, 739, 835
AjnI	CCWGG	3 cut(s)	588, 621, 904
AluBI	AGCT	4 cut(s)	142, 379, 1023, 1049
AluI	AGCT	4 cut(s)	142, 379, 1023, 1049
Alw21I	GWGCWC	1 cut(s)	1067
Alw26I	GTCTC	2 cut(s)	193, 551
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	2 cut(s)	432, 518
ApeKI	GCWGC	4 cut(s)	61, 315, 379, 646
ApoI	RAATTY	3 cut(s)	4, 48, 251
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	440, 491, 944
AvaI	CYCGRG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	1067
BbvI	GCAGC	4 cut(s)	48, 302, 366, 633
BccI	CCATC	3 cut(s)	419, 518, 773
BciT130I	CCWGG	3 cut(s)	590, 623, 906
BclI	TGATCA	2 cut(s)	232, 595
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	193, 551
BfaI	CTAG	2 cut(s)	321, 440
BisI	GCNGC	4 cut(s)	62, 316, 380, 647
BlsI	GCNGC	4 cut(s)	63, 317, 381, 648
Bme1390I	CCNGG	4 cut(s)	29, 590, 623, 906
BmeT110I	CYCGRG	1 cut(s)	366
BmrFI	CCNGG	4 cut(s)	29, 590, 623, 906
BmsI	GCATC	3 cut(s)	302, 773, 799
BplI	GAGNNNNNCTC	2 cut(s)	992, 1024
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	905
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 393
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	3 cut(s)	590, 623, 906
BseDI	CCNNGG	1 cut(s)	905
BseGI	GGATG	6 cut(s)	529, 598, 784, 788, 814, 822
BseLI	CCNNNNNNNGG	2 cut(s)	335, 393
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	482, 546, 872, 1059
BseNI	ACTGG	1 cut(s)	934
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	4 cut(s)	48, 302, 366, 633
BshFI	GGCC	2 cut(s)	434, 520
BsiHKAI	GWGCWC	1 cut(s)	1067
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	29, 492, 521
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	335, 393
BsmAI	GTCTC	2 cut(s)	193, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	434, 520
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	1067
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	232, 595
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	434, 520
BspCNI	CTCAG	4 cut(s)	481, 547, 873, 1058
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	905
BssMI	GATC	2 cut(s)	232, 595
BssNAI	GTATAC	2 cut(s)	326, 680
Bst1107I	GTATAC	2 cut(s)	326, 680
Bst2UI	CCWGG	3 cut(s)	590, 623, 906
Bst4CI	ACNGT	3 cut(s)	94, 743, 874
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	454, 493
BstDEI	CTNAG	4 cut(s)	468, 555, 881, 1045
BstF5I	GGATG	6 cut(s)	529, 598, 784, 788, 814, 822
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	2 cut(s)	235, 598
BstMAI	GTCTC	2 cut(s)	193, 551
BstMBI	GATC	2 cut(s)	232, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	3 cut(s)	590, 623, 906
BstSCI	CCNGG	4 cut(s)	27, 588, 621, 904
BstV1I	GCAGC	4 cut(s)	48, 302, 366, 633
BstZ17I	GTATAC	2 cut(s)	326, 680
BsuRI	GGCC	2 cut(s)	434, 520
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	6 cut(s)	529, 598, 784, 788, 814, 822
Cac8I	GCNNGC	2 cut(s)	454, 493
CfoI	GCGC	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	491
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	4 cut(s)	145, 700, 1006, 1042
CviAII	CATG	2 cut(s)	17, 1052
CviQI	GTAC	4 cut(s)	145, 700, 1006, 1042
DdeI	CTNAG	4 cut(s)	468, 555, 881, 1045
DpnI	GATC	2 cut(s)	234, 597
DpnII	GATC	2 cut(s)	232, 595
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	588, 621, 904
EcoT22I	ATGCAT	1 cut(s)	1057
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	2 cut(s)	20, 1055
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	2 cut(s)	16, 1051
FauNDI	CATATG	2 cut(s)	609, 920
FbaI	TGATCA	2 cut(s)	232, 595
FblI	GTMKAC	2 cut(s)	325, 679
Fnu4HI	GCNGC	4 cut(s)	62, 316, 380, 647
FokI	GGATG	6 cut(s)	536, 605, 791, 795, 821, 829
Fsp4HI	GCNGC	4 cut(s)	62, 316, 380, 647
FspBI	CTAG	2 cut(s)	321, 440
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	62, 316, 380, 647
HaeIII	GGCC	2 cut(s)	434, 520
HapII	CCGG	3 cut(s)	29, 492, 521
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	20, 1055
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	6 cut(s)	194, 364, 409, 551, 754, 773
HpaII	CCGG	3 cut(s)	29, 492, 521
HphI	GGTGA	3 cut(s)	440, 491, 944
Hpy166II	GTNNAC	5 cut(s)	101, 326, 343, 657, 680
Hpy188III	TCNNGA	3 cut(s)	82, 268, 368
Hpy8I	GTNNAC	5 cut(s)	101, 326, 343, 657, 680
HpyAV	CCTTC	3 cut(s)	53, 232, 265
HpyCH4III	ACNGT	3 cut(s)	94, 743, 874
HpyCH4V	TGCA	3 cut(s)	456, 649, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	4 cut(s)	468, 555, 881, 1045
Hsp92II	CATG	2 cut(s)	20, 1055
HspAI	GCGC	1 cut(s)	644
KroI	GCCGGC	1 cut(s)	491
KroNI	GCCGGC	1 cut(s)	493
Ksp22I	TGATCA	2 cut(s)	232, 595
Kzo9I	GATC	2 cut(s)	232, 595
LmnI	GCTCC	2 cut(s)	84, 1062
Lsp1109I	GCAGC	4 cut(s)	48, 302, 366, 633
LweI	GCATC	3 cut(s)	302, 773, 799
MabI	ACCWGGT	1 cut(s)	621
MaeI	CTAG	2 cut(s)	321, 440
MaeIII	GTNAC	3 cut(s)	72, 353, 406
MalI	GATC	2 cut(s)	234, 597
MboI	GATC	2 cut(s)	232, 595
MboII	GAAGA	5 cut(s)	175, 727, 832, 1027, 1065
MhlI	GDGCHC	1 cut(s)	1067
MluCI	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
MlyI	GAGTC	4 cut(s)	188, 358, 403, 782
MmeI	TCCRAC	3 cut(s)	424, 750, 756
MnlI	CCTC	7 cut(s)	51, 178, 393, 424, 564, 705, 844
Mph1103I	ATGCAT	1 cut(s)	1057
MroNI	GCCGGC	1 cut(s)	491
MseI	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	3 cut(s)	29, 492, 521
MspR9I	CCNGG	4 cut(s)	29, 590, 623, 906
MvaI	CCWGG	3 cut(s)	590, 623, 906
MwoI	GCNNNNNNNGC	1 cut(s)	501
NaeI	GCCGGC	1 cut(s)	493
NciI	CCSGG	1 cut(s)	29
NdeI	CATATG	2 cut(s)	609, 920
NdeII	GATC	2 cut(s)	232, 595
NgoMIV	GCCGGC	1 cut(s)	491
NlaIII	CATG	2 cut(s)	20, 1055
NmuCI	GTSAC	2 cut(s)	72, 406
NsiI	ATGCAT	1 cut(s)	1057
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 985
PdiI	GCCGGC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	551, 754
PflFI	GACNNNGTC	1 cut(s)	35
PfoI	TCCNGGA	2 cut(s)	27, 588
PkrI	GCNGC	4 cut(s)	63, 317, 381, 648
PleI	GAGTC	4 cut(s)	188, 358, 403, 781
PpsI	GAGTC	4 cut(s)	188, 358, 403, 781
Psp6I	CCWGG	3 cut(s)	588, 621, 904
PspGI	CCWGG	3 cut(s)	588, 621, 904
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	4 cut(s)	146, 701, 1007, 1043
RsaNI	GTAC	4 cut(s)	145, 700, 1006, 1042
SaqAI	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
SatI	GCNGC	4 cut(s)	62, 316, 380, 647
Sau3AI	GATC	2 cut(s)	232, 595
SchI	GAGTC	4 cut(s)	188, 358, 403, 782
ScrFI	CCNGG	4 cut(s)	29, 590, 623, 906
SduI	GDGCHC	1 cut(s)	1067
SetI	ASST	8 cut(s)	144, 189, 288, 331, 381, 627, 1025, 1051
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	302, 773, 799
Sse9I	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	321, 440
StyD4I	CCNGG	4 cut(s)	27, 588, 621, 904
TaaI	ACNGT	3 cut(s)	94, 743, 874
TaqI	TCGA	2 cut(s)	56, 212
TasI	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
TatI	WGTACW	2 cut(s)	144, 1005
TfiI	GAWTC	2 cut(s)	551, 754
Tru1I	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
Tru9I	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
TseFI	GTSAC	2 cut(s)	72, 406
TseI	GCWGC	4 cut(s)	61, 315, 379, 646
Tsp45I	GTSAC	2 cut(s)	72, 406
TspDTI	ATGAA	7 cut(s)	17, 124, 165, 626, 747, 833, 965
Tth111I	GACNNNGTC	1 cut(s)	35
XapI	RAATTY	3 cut(s)	4, 48, 251
XmiI	GTMKAC	2 cut(s)	325, 679
XspI	CTAG	2 cut(s)	321, 440
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.