MD16G1149000.v1.1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012734
Physical Location & Seq
Forward (+)
11710266 .. 11711630
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1149000.v1.1.491

Sequence Viewer

Length: 759 bp
ATGCATCAGACTGCGTTCGATCAAACACCCATCTCGAATTTTTCACCTGGGTTAAGGTTGCTTCCGAAGAGTAGGGAGCGCCATGTGACCCGATTTTACCCTGATGATGAGGCAACCCTGGTGGGATTGGCTTGCAATTTGTCCACCCAGAAGTTTAATGTTGTTTTAGCGGGCTACCATCGGACTTTTGGTCATAGGCCGAATGGAACTTTTGTATGTATGATATTTGATTCTGAGTCGAGCAAATGGAGGAAGTTTGTTTCGTTTCAGGATGATCAGTTCACCCATATGAATAAGAGCCAAGTCGTGTTTGTTAATGGTGCACTTCATTGGTTGACTGGTAGTTCCTGTATTCTCGCGCTCGATTTGGAGTTTGATGTTTGGAGGAAGATGTCATTGCCGGAACAAGTGACTTGTGTGTCTGGAAATAGGTTTTACTTGTTGGAGTCAGATGGTTGCCTGTCGGTGATCCAGATTTCAGATGCTTGGATGAAAATTTGGGTGTTGAAATATTACGGGAGAGAGGAGTGGCATTTGGTGGATACGGTGAGTCTTCGATGTATCAAAGGACTTGTTACGGGCATCTTCCCCATATGTCAGACTGGTGAATGCGTTTTCTTGGCAACCCACAAGCAGATACTGGTGTTTTATCGCAAGACTCGTGTGTGGAAAGAGATGTACTCTGTGAAGAACAGCTCTACACTCCCGTTGTGGTACTCGGCGCATGCATTTCGGAGCACGATTTTGTCTTGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

253

Amino Acids

29.1

Weight (kDa)

8.84

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 67 - 229 2.4e-09 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 80 - 229 1.1e-06 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012734)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49610
fragaria_vesca FvH4_4g20690
malus_domestica MD13G1148700.v1.1 MD16G1149000.v1.1
prunus_persica Prupe.1G112700_v2.0.a1
pyrus_communis pycom13g12800 pycom16g12720
rosa_chinensis RchiOBHm_Chr4g0426111
rosa_laevigata RLG00000007318
rosa_multiflora Rmu_co8375493.1_g000001 Rmu_ssc0000281.1_g000004
rosa_roxburghii Rroxscaffold_5G00368100
rosa_rugosa Rorug04G0209100
rosa_samantha Rh4AG265600 Rh4BG271700 Rh4CG284600 Rh4DG267800
rosa_wichuraiana Rw4G022950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AccII CGCG 1 cut(s) 359
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 2 cut(s) 37, 495
AfaI GTAC 2 cut(s) 680, 716
AgsI TTSAA 1 cut(s) 508
AhdI GACNNNNNGTC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 46, 117
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 696
AluI AGCT 1 cut(s) 696
Alw21I GWGCWC 2 cut(s) 325, 740
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 1 cut(s) 463
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 1 cut(s) 197
ApaLI GTGCAC 1 cut(s) 321
ApoI RAATTY 2 cut(s) 37, 495
AspLEI GCGC 3 cut(s) 81, 361, 724
AsuHPI GGTGA 5 cut(s) 36, 274, 478, 559, 617
BaeGI GKGCMC 1 cut(s) 325
BaeI ACNNNNGTAYC 2 cut(s) 629, 662
BauI CACGAG 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 2 cut(s) 325, 740
BccI CCATC 3 cut(s) 38, 186, 446
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 2 cut(s) 48, 119
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 82
BfuI GTATCC 1 cut(s) 535
Bme1390I CCNGG 2 cut(s) 48, 119
BmeRI GACNNNNNGTC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 48, 119
BmsI GCATC 3 cut(s) 13, 472, 591
BpiI GAAGAC 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BsaJI CCNNGG 2 cut(s) 47, 117
Bse1I ACTGG 3 cut(s) 343, 607, 645
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 48, 119
BseDI CCNNGG 2 cut(s) 47, 117
BseGI GGATG 2 cut(s) 277, 495
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 343, 607, 645
BseRI GAGGAG 1 cut(s) 539
BseSI GKGCMC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 199
BsiHKAI GWGCWC 2 cut(s) 325, 740
BsiSI CCGG 1 cut(s) 401
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 325, 740
Bsp143I GATC 3 cut(s) 19, 274, 468
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 359
BspPI GGATC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 3 cut(s) 343, 607, 645
BssECI CCNNGG 2 cut(s) 47, 117
BssMI GATC 3 cut(s) 19, 274, 468
BssSI CACGAG 1 cut(s) 660
Bst2BI CACGAG 1 cut(s) 660
Bst2UI CCWGG 2 cut(s) 48, 119
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 133, 172, 726
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 277, 495
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 3 cut(s) 81, 361, 724
BstKTI GATC 3 cut(s) 22, 277, 471
BstMBI GATC 3 cut(s) 19, 274, 468
BstNI CCWGG 2 cut(s) 48, 119
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 46, 117
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 545
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 277, 495
Cac8I GCNNGC 3 cut(s) 133, 172, 726
CaiI CAGNNNCTG 1 cut(s) 640
CfoI GCGC 3 cut(s) 81, 361, 724
Csp6I GTAC 2 cut(s) 679, 715
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 2 cut(s) 83, 725
CviJI RGCY 5 cut(s) 131, 174, 199, 300, 696
CviKI_1 RGCY 5 cut(s) 131, 174, 199, 300, 696
CviQI GTAC 2 cut(s) 679, 715
DdeI CTNAG 1 cut(s) 234
DpnI GATC 3 cut(s) 21, 276, 470
DpnII GATC 3 cut(s) 19, 274, 468
DrdI GACNNNNNNGTC 1 cut(s) 418
DriI GACNNNNNGTC 1 cut(s) 189
DseDI GACNNNNNNGTC 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 46, 117
EcoT22I ATGCAT 2 cut(s) 6, 730
FaeI CATG 2 cut(s) 86, 728
FaiI YATR 9 cut(s) 84, 195, 217, 221, 288, 290, 593, 595, 726
FatI CATG 2 cut(s) 82, 724
FauI CCCGC 1 cut(s) 163
FauNDI CATATG 2 cut(s) 288, 593
FbaI TGATCA 1 cut(s) 274
FokI GGATG 2 cut(s) 284, 502
GlaI GCGC 3 cut(s) 80, 360, 723
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 401
HhaI GCGC 3 cut(s) 81, 361, 724
Hin1II CATG 2 cut(s) 86, 728
Hin6I GCGC 3 cut(s) 79, 359, 722
HinP1I GCGC 3 cut(s) 79, 359, 722
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HinfI GANTC 5 cut(s) 230, 236, 446, 550, 658
HpaII CCGG 1 cut(s) 401
HphI GGTGA 5 cut(s) 36, 274, 478, 559, 617
Hpy166II GTNNAC 4 cut(s) 144, 282, 323, 336
Hpy188I TCNGA 8 cut(s) 9, 66, 183, 235, 451, 481, 600, 735
Hpy188III TCNNGA 4 cut(s) 34, 269, 423, 472
Hpy8I GTNNAC 4 cut(s) 144, 282, 323, 336
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 4 cut(s) 4, 135, 323, 728
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 86, 728
HspAI GCGC 3 cut(s) 79, 359, 722
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 19, 274, 468
LmnI GCTCC 2 cut(s) 76, 735
LweI GCATC 3 cut(s) 13, 472, 591
MaeIII GTNAC 3 cut(s) 85, 409, 574
MalI GATC 3 cut(s) 21, 276, 470
MboI GATC 3 cut(s) 19, 274, 468
MboII GAAGA 5 cut(s) 79, 400, 545, 577, 700
MhlI GDGCHC 2 cut(s) 325, 740
MluCI AATT 3 cut(s) 37, 136, 495
MlyI GAGTC 4 cut(s) 245, 455, 559, 652
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 4 cut(s) 103, 243, 378, 517
Mph1103I ATGCAT 2 cut(s) 6, 730
MseI TTAA 3 cut(s) 53, 156, 315
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 48, 119
Mva1269I GAATGC 1 cut(s) 614
MvaI CCWGG 2 cut(s) 48, 119
MvnI CGCG 1 cut(s) 359
NdeI CATATG 2 cut(s) 288, 593
NdeII GATC 3 cut(s) 19, 274, 468
NlaIII CATG 2 cut(s) 86, 728
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 2 cut(s) 85, 409
NsiI ATGCAT 2 cut(s) 6, 730
NspI RCATGY 1 cut(s) 728
PaeI GCATGC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 658
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 230
PleI GAGTC 4 cut(s) 244, 454, 558, 652
PpsI GAGTC 4 cut(s) 244, 454, 558, 652
Psp6I CCWGG 2 cut(s) 46, 117
PspGI CCWGG 2 cut(s) 46, 117
PstNI CAGNNNCTG 1 cut(s) 640
RsaI GTAC 2 cut(s) 680, 716
RsaNI GTAC 2 cut(s) 679, 715
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 3 cut(s) 53, 156, 315
Sau3AI GATC 3 cut(s) 19, 274, 468
SchI GAGTC 4 cut(s) 245, 455, 559, 652
ScrFI CCNGG 2 cut(s) 48, 119
SduI GDGCHC 2 cut(s) 325, 740
SetI ASST 4 cut(s) 49, 59, 434, 698
SfaNI GCATC 3 cut(s) 13, 472, 591
SmiMI CAYNNNNRTG 1 cut(s) 287
SphI GCATGC 1 cut(s) 728
Sse9I AATT 3 cut(s) 37, 136, 495
SsiI CCGC 1 cut(s) 170
SspI AATATT 1 cut(s) 512
StyD4I CCNGG 2 cut(s) 46, 117
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 5 cut(s) 18, 35, 239, 363, 556
TasI AATT 3 cut(s) 37, 136, 495
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 53, 156, 315
Tru9I TTAA 3 cut(s) 53, 156, 315
TseFI GTSAC 2 cut(s) 85, 409
Tsp45I GTSAC 2 cut(s) 85, 409
TspDTI ATGAA 3 cut(s) 305, 317, 506
VneI GTGCAC 1 cut(s) 321
XapI RAATTY 2 cut(s) 37, 495
XceI RCATGY 1 cut(s) 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
Zsp2I ATGCAT 2 cut(s) 6, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.