Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Forward (+)

20689243 .. 20693470

Gene Structure 4228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGCTTCGACTCTTAGGAGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAGATGACAGTCAGAGATGCTCTAAATTCTGCAATTGATGAGGAAATGTCTGCTGATCCTAAAGTATTTGTCATGGGTGAAGAGGTTGGCCAATATCAAGGTGCCTACAAGATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACTGAGGCTGGATTTACTGGAATTGGAGTTGGTGCTGCCTATGCTGGCTTAAAGCCCGTTGTAGAATTTATGACGTTTAACTTCTCTATGCAGGCAATTGATCATATCATCAATTCCGCTGCAAAGTCAAATTACATGTCTGCTGGACAGATAAATGTACCCATCGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGTGTTGGAGCTCAACATTCTCAGTGCTATGCAGCGTGGTATGCCTCAGTTCCTGGTTTGAAAGTCCTTGCTCCGTATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCTGACCCTGTTGTCTTCCTTGAAAACGAGTTACTATATGGTGAATCATTCCCTATTTCAGAAGAAGCCCTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGATTGAACGAGAAGGAAAGGACGTAACGATAGTAACTTTCTCGAAGATGGTCGGTTTCGCCCTCAAGGCAGCTGAGAAGCTCGCAGAAGAGGGAATAAGTGCTGAGGTAATAAATCTTCGATCAATCCGTCCGCTTGACCGAGCCACCATCAATGCTTCAGTGAGGAAAACGAGTAGATTGGTAACAGTTGAAGAAGGTTTCCCACAACATGGAGTCTGTGCAGAAATTTGTGCGTCGGTTGTAGAAGAGAGCTTTTCGTACTTGGATGCACCGGTCGAGAGGATTGCAGGAGCTGATGTTCCAATGCCGTATGCAGCTAACCTAGAGAGATTGGCTCTTCCTCAGATAGAGGACATCGTTCGTGCATCAAAGAGAGCTTGTTACAGATCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031090 GO:0031974 GO:0031981 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

363

Amino Acids

39.18

Weight (kDa)

5.67

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	35 - 209	3.5e-44	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	229 - 351	5.1e-45	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	387, 827
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	127, 335, 921
AcuI	CTGAAG	2 cut(s)	570, 837
AfaI	GTAC	2 cut(s)	429, 956
AfiI	CCNNNNNNNGG	1 cut(s)	905
AflIII	ACRYGT	1 cut(s)	405
AgeI	ACCGGT	1 cut(s)	967
AgsI	TTSAA	5 cut(s)	526, 611, 666, 701, 887
AjnI	CCWGG	1 cut(s)	517
AloI	GAACNNNNNNTCC	2 cut(s)	978, 1010
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	2 cut(s)	518, 989
AoxI	GGCC	2 cut(s)	190, 223
ApeKI	GCWGC	9 cut(s)	89, 305, 389, 458, 461, 497, 575, 764, 1010
ApoI	RAATTY	3 cut(s)	127, 335, 921
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AsiGI	ACCGGT	1 cut(s)	967
AspS9I	GGNCC	2 cut(s)	242, 446
AsuHPI	GGTGA	2 cut(s)	191, 641
AvaII	GGWCC	2 cut(s)	242, 446
BalI	TGGCCA	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	795, 827
BauI	CACGAG	1 cut(s)	558
BbsI	GAAGAC	3 cut(s)	557, 595, 668
Bbv12I	GWGCWC	1 cut(s)	478
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	9 cut(s)	101, 292, 376, 445, 448, 509, 562, 776, 1022
BccI	CCATC	5 cut(s)	26, 35, 440, 736, 851
BceAI	ACGGC	1 cut(s)	988
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BciT130I	CCWGG	1 cut(s)	519
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	78, 1019
BglI	GCCNNNNNGGC	1 cut(s)	761
BisI	GCNGC	9 cut(s)	90, 306, 390, 459, 462, 498, 576, 765, 1011
BlsI	GCNGC	9 cut(s)	91, 307, 391, 460, 463, 499, 577, 766, 1012
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	242, 446
BmgT120I	GGNCC	2 cut(s)	242, 446
BmiI	GGNNCC	2 cut(s)	205, 448
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	4 cut(s)	109, 544, 952, 1070
BpiI	GAAGAC	3 cut(s)	557, 595, 668
BplI	GAGNNNNNCTC	2 cut(s)	1015, 1047
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	34, 743
Bsa29I	ATCGAT	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	967
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse118I	RCCGGY	1 cut(s)	967
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	30
BseGI	GGATG	1 cut(s)	967
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMII	CTCAG	7 cut(s)	237, 264, 500, 525, 759, 789, 1052
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	9 cut(s)	101, 292, 376, 445, 448, 509, 562, 776, 1022
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	192, 225
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	967
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	968
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	1 cut(s)	579
BsnI	GGCC	2 cut(s)	192, 225
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	157, 213, 370, 815, 1082
BspACI	CCGC	2 cut(s)	387, 827
BspANI	GGCC	2 cut(s)	192, 225
BspCNI	CTCAG	7 cut(s)	238, 265, 499, 524, 760, 790, 1051
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	205, 448
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	1038
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	967
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	967
BssMI	GATC	5 cut(s)	157, 213, 370, 815, 1082
BssSI	CACGAG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	112, 883
Bst6I	CTCTTC	4 cut(s)	177, 777, 936, 1038
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	316, 363, 777
BstDEI	CTNAG	8 cut(s)	47, 246, 273, 486, 511, 768, 798, 1038
BstF5I	GGATG	1 cut(s)	967
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	5 cut(s)	160, 216, 373, 818, 1085
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	5 cut(s)	157, 213, 370, 815, 1082
BstMCI	CGRYCG	1 cut(s)	972
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 311, 506, 554, 761
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	517
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	9 cut(s)	101, 292, 376, 445, 448, 509, 562, 776, 1022
BstV2I	GAAGAC	3 cut(s)	557, 595, 668
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	192, 225
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	967
BtsIMutI	CAGTG	2 cut(s)	494, 861
Cac8I	GCNNGC	3 cut(s)	316, 363, 777
CaiI	CAGNNNCTG	2 cut(s)	518, 989
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	242, 446
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	2 cut(s)	64, 918
Csp6I	GTAC	2 cut(s)	428, 955
CspAI	ACCGGT	1 cut(s)	967
CviAII	CATG	3 cut(s)	175, 406, 905
CviQI	GTAC	2 cut(s)	428, 955
DdeI	CTNAG	8 cut(s)	47, 246, 273, 486, 511, 768, 798, 1038
DpnI	GATC	5 cut(s)	159, 215, 372, 817, 1084
DpnII	GATC	5 cut(s)	157, 213, 370, 815, 1082
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	4 cut(s)	177, 777, 936, 1038
EarI	CTCTTC	4 cut(s)	177, 777, 936, 1038
Ecl136II	GAGCTC	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	242, 446
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	570, 837
EcoICRI	GAGCTC	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	3 cut(s)	178, 409, 908
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	3 cut(s)	174, 405, 904
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	9 cut(s)	90, 306, 390, 459, 462, 498, 576, 765, 1011
FokI	GGATG	1 cut(s)	974
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	9 cut(s)	90, 306, 390, 459, 462, 498, 576, 765, 1011
FspBI	CTAG	2 cut(s)	78, 1019
GluI	GCNGC	9 cut(s)	90, 306, 390, 459, 462, 498, 576, 765, 1011
HaeIII	GGCC	2 cut(s)	192, 225
HapII	CCGG	1 cut(s)	968
HgaI	GACGC	2 cut(s)	64, 918
Hin1II	CATG	3 cut(s)	178, 409, 908
HinfI	GANTC	6 cut(s)	9, 43, 60, 632, 662, 909
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	2 cut(s)	191, 641
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	116, 649, 1041
Hpy188III	TCNNGA	4 cut(s)	13, 245, 736, 973
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	2 cut(s)	701, 884
HpyCH4III	ACNGT	2 cut(s)	112, 883
HpyCH4IV	ACGT	2 cut(s)	344, 717
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 311, 506, 554, 761
HpyF3I	CTNAG	8 cut(s)	47, 246, 273, 486, 511, 768, 798, 1038
HpySE526I	ACGT	2 cut(s)	344, 717
Hsp92II	CATG	3 cut(s)	178, 409, 908
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	157, 213, 370, 815, 1082
LguI	GCTCTTC	1 cut(s)	1038
LmnI	GCTCC	5 cut(s)	35, 81, 473, 541, 986
Lsp1109I	GCAGC	9 cut(s)	101, 292, 376, 445, 448, 509, 562, 776, 1022
LweI	GCATC	4 cut(s)	109, 544, 952, 1070
MaeI	CTAG	2 cut(s)	78, 1019
MaeII	ACGT	2 cut(s)	344, 717
MaeIII	GTNAC	5 cut(s)	618, 718, 727, 877, 1076
MalI	GATC	5 cut(s)	159, 215, 372, 817, 1084
MboI	GATC	5 cut(s)	157, 213, 370, 815, 1082
MfeI	CAATTG	2 cut(s)	135, 366
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	8 cut(s)	127, 135, 291, 335, 366, 382, 400, 921
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	37, 918
MmeI	TCCRAC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	3 cut(s)	320, 348, 570
Msp20I	TGGCCA	1 cut(s)	192
MspA1I	CMGCKG	4 cut(s)	92, 389, 548, 767
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	2 cut(s)	135, 366
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	5 cut(s)	95, 311, 506, 554, 761
NdeII	GATC	5 cut(s)	157, 213, 370, 815, 1082
NlaIII	CATG	3 cut(s)	178, 409, 908
NlaIV	GGNNCC	2 cut(s)	205, 448
NspI	RCATGY	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	225
PciI	ACATGT	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	1038
PcsI	WCGNNNNNNNCGW	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	9, 60, 632, 662
PflMI	CCANNNNNTGG	1 cut(s)	905
PinAI	ACCGGT	1 cut(s)	967
PkrI	GCNGC	9 cut(s)	91, 307, 391, 460, 463, 499, 577, 766, 1012
PleI	GAGTC	2 cut(s)	37, 917
PpsI	GAGTC	2 cut(s)	37, 917
PpuMI	RGGWCCY	1 cut(s)	446
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	205, 448
PspPI	GGNCC	2 cut(s)	242, 446
PspPPI	RGGWCCY	1 cut(s)	446
PstNI	CAGNNNCTG	2 cut(s)	518, 989
PvuII	CAGCTG	3 cut(s)	92, 548, 767
RsaI	GTAC	2 cut(s)	429, 956
RsaNI	GTAC	2 cut(s)	428, 955
SacI	GAGCTC	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	1038
SaqAI	TTAA	3 cut(s)	320, 348, 570
SatI	GCNGC	9 cut(s)	90, 306, 390, 459, 462, 498, 576, 765, 1011
Sau3AI	GATC	5 cut(s)	157, 213, 370, 815, 1082
Sau96I	GGNCC	2 cut(s)	242, 446
SchI	GAGTC	2 cut(s)	37, 918
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	109, 544, 952, 1070
SinI	GGWCC	2 cut(s)	242, 446
SmlI	CTYRAG	2 cut(s)	13, 758
SmoI	CTYRAG	2 cut(s)	13, 758
Sse9I	AATT	8 cut(s)	127, 135, 291, 335, 366, 382, 400, 921
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	387, 827
SspMI	CTAG	2 cut(s)	78, 1019
SstI	GAGCTC	1 cut(s)	478
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	112, 883
TaiI	ACGT	2 cut(s)	347, 720
TaqI	TCGA	6 cut(s)	30, 41, 737, 814, 972, 1085
TaqII	GACCGA	1 cut(s)	849
TasI	AATT	8 cut(s)	127, 135, 291, 335, 366, 382, 400, 921
TfiI	GAWTC	4 cut(s)	9, 60, 632, 662
Tru1I	TTAA	3 cut(s)	320, 348, 570
Tru9I	TTAA	3 cut(s)	320, 348, 570
TscAI	CASTG	2 cut(s)	494, 861
TseI	GCWGC	9 cut(s)	89, 305, 389, 458, 461, 497, 575, 764, 1010
TspGWI	ACGGA	2 cut(s)	528, 812
TspRI	CASTG	2 cut(s)	494, 861
Van91I	CCANNNNNTGG	1 cut(s)	905
VpaK11BI	GGWCC	2 cut(s)	242, 446
XapI	RAATTY	3 cut(s)	127, 335, 921
XceI	RCATGY	1 cut(s)	409
XspI	CTAG	2 cut(s)	78, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.