Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016937.1

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Reverse (-)

13066 .. 17710

Gene Structure 4645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgttggggattataaggcaaaaactgggagctggaagcccatctgctacgatgctggggcagttgcagaggatccgccccgccgcgtcggcattgagaagtttctcatcttctgcaaaagagcagatgacagtgagggatgctctaaactctgcccttgatgaggaaatgtccgccgatccgaaagtgtttttgatgggtgaagaggttggggagtatcaaggtgcttacaagataactaaaggacttctggataagtatggccctgagagggttctcgataccccaatcacagagacgacagtgagggatgctctaaactctgcccttgatgaggaaatgtccgccgatccgaaagtgtttttgatgggtgaagaggttggggagtatcaaggtgcttacaagataactaaaggacttctggataagtatggccctgagagggttctcgataccccaatcacagaggctggatttactggaattggagttggtgctgcttactatggtctgaaacctgttgtagagttcatgaccttcaacttctcaatgcaggcaattgaccatatcatcaattctgctgcaaaatcaaattatatgtctgctggtcaaataaatgtgcccattgttttcagaggtccaaacggtgctgctgctggtgttggtgcccagcactctcagtgttatgcagcatggtttgctgccgtccctgggttgaaagttttggccccttattcatctgaagatgctcgtggactgctaaaagctgccattagggaccctgatcctgttgtttttcttgaaaatgagttgctatatggtgaatcatttcctgtttctgccgaagtttttgattccagtttttgccttccaataggaaaagctaagattgagagagaaggaaaggatatcaccattacagctttctcaaaaatggttggctatgctctacaggctgctgagattcttgctaaggagggaattaatgctgaggtcataaacttgcggtcaattcgtcctctggacagggccaccatcaacacttcagtcaggaaaaccaacagacttttaacagttgaagaaggatttcctcagcatggtgttggtgctgaaatctgtgcatccgttgttgaggagagctttggttatcttgatgcgcctgttgagagggttgctggggctgatgttcccatgccttatgcagccaatttagagagattggctgttcctcagattgaagatattgttcgtgctgcaaagagagcgtgccacagatctgtgccgttggctgcaagtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

433

Amino Acids

46.51

Weight (kDa)

5.13

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	665
AccII	CGCG	1 cut(s)	86
AciI	CCGC	6 cut(s)	76, 81, 84, 174, 345, 1006
AclWI	GGATC	5 cut(s)	67, 80, 173, 344, 779
AcuI	CTGAAG	2 cut(s)	762, 1029
AfiI	CCNNNNNNNGG	6 cut(s)	163, 271, 334, 442, 711, 1097
AgsI	TTSAA	5 cut(s)	541, 718, 803, 1079, 1238
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	5 cut(s)	32, 767, 884, 923, 1140
AluI	AGCT	5 cut(s)	32, 767, 884, 923, 1140
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	5 cut(s)	67, 80, 173, 344, 779
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	4 cut(s)	262, 433, 726, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AseI	ATTAAT	1 cut(s)	984
Asp700I	GAANNNNTTC	2 cut(s)	828, 1086
AspLEI	GCGC	1 cut(s)	1159
AspS9I	GGNCC	6 cut(s)	263, 434, 638, 727, 778, 1029
AsuHPI	GGTGA	4 cut(s)	212, 383, 833, 904
AvaII	GGWCC	2 cut(s)	638, 778
BaeGI	GKGCMC	2 cut(s)	624, 670
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	750
BbvCI	CCTCAGC	2 cut(s)	990, 1092
BccI	CCATC	4 cut(s)	49, 190, 361, 1043
BceAI	ACGGC	2 cut(s)	689, 1267
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	950
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	1274
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	2 cut(s)	638, 778
BmgT120I	GGNCC	6 cut(s)	263, 434, 638, 727, 778, 1029
BmiI	GGNNCC	5 cut(s)	74, 667, 729, 779, 780
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	6 cut(s)	42, 130, 301, 736, 1130, 1144
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	4 cut(s)	127, 159, 298, 330
Bpu10I	CCTNAGC	3 cut(s)	972, 990, 1092
BsaJI	CCNNGG	2 cut(s)	709, 710
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 271, 334, 442, 711, 1097
Bse1I	ACTGG	3 cut(s)	30, 484, 858
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	709, 710
BseGI	GGATG	3 cut(s)	145, 316, 1121
BseLI	CCNNNNNNNGG	6 cut(s)	163, 271, 334, 442, 711, 1097
BseMII	CTCAG	7 cut(s)	258, 429, 692, 951, 981, 1106, 1244
BseNI	ACTGG	3 cut(s)	30, 484, 858
BseRI	GAGGAG	1 cut(s)	1148
BseSI	GKGCMC	2 cut(s)	624, 670
BseYI	CCCAGC	3 cut(s)	55, 669, 1175
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	4 cut(s)	264, 435, 728, 1031
BshNI	GGYRCC	1 cut(s)	665
BslFI	GGGAC	2 cut(s)	692, 791
BslI	CCNNNNNNNGG	6 cut(s)	163, 271, 334, 442, 711, 1097
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	692, 791
BsnI	GGCC	4 cut(s)	264, 435, 728, 1031
Bsp1286I	GDGCHC	2 cut(s)	624, 670
Bsp143I	GATC	5 cut(s)	72, 178, 349, 784, 1274
BspACI	CCGC	6 cut(s)	76, 81, 84, 174, 345, 1006
BspANI	GGCC	4 cut(s)	264, 435, 728, 1031
BspCNI	CTCAG	7 cut(s)	259, 430, 691, 952, 982, 1105, 1243
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	5 cut(s)	74, 667, 729, 779, 780
BspPI	GGATC	5 cut(s)	67, 80, 173, 344, 779
BspT107I	GGYRCC	1 cut(s)	665
BsrI	ACTGG	3 cut(s)	30, 484, 858
BssECI	CCNNGG	2 cut(s)	709, 710
BssMI	GATC	5 cut(s)	72, 178, 349, 784, 1274
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	133, 304, 647, 1075
Bst6I	CTCTTC	2 cut(s)	198, 369
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	555, 1267
BstDEI	CTNAG	9 cut(s)	267, 438, 678, 885, 960, 972, 990, 1092, 1230
BstENI	CCTNNNNNAGG	2 cut(s)	161, 332
BstF5I	GGATG	3 cut(s)	145, 316, 1121
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	1159
BstKTI	GATC	5 cut(s)	75, 181, 352, 787, 1277
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	5 cut(s)	72, 178, 349, 784, 1274
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 698, 953, 1262, 1295
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	950
BstSLI	GKGCMC	2 cut(s)	624, 670
BstUI	CGCG	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	72, 1274
BstYI	RGATCY	2 cut(s)	72, 1274
BsuRI	GGCC	4 cut(s)	264, 435, 728, 1031
BtsCI	GGATG	3 cut(s)	145, 316, 1121
BtsIMutI	CAGTG	3 cut(s)	138, 309, 686
Cac8I	GCNNGC	2 cut(s)	555, 1267
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	1159
Cfr13I	GGNCC	6 cut(s)	263, 434, 638, 727, 778, 1029
CseI	GACGC	1 cut(s)	75
CviAII	CATG	4 cut(s)	532, 693, 1097, 1192
DdeI	CTNAG	9 cut(s)	267, 438, 678, 885, 960, 972, 990, 1092, 1230
DpnI	GATC	5 cut(s)	74, 180, 351, 786, 1276
DpnII	GATC	5 cut(s)	72, 178, 349, 784, 1274
Eam1104I	CTCTTC	2 cut(s)	198, 369
EarI	CTCTTC	2 cut(s)	198, 369
EciI	GGCGGA	3 cut(s)	65, 163, 334
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	638, 778
Eco57I	CTGAAG	2 cut(s)	762, 1029
EcoNI	CCTNNNNNAGG	2 cut(s)	161, 332
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	910
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	4 cut(s)	535, 696, 1100, 1195
FaqI	GGGAC	2 cut(s)	692, 791
FatI	CATG	4 cut(s)	531, 692, 1096, 1191
FauI	CCCGC	1 cut(s)	88
FokI	GGATG	3 cut(s)	152, 323, 1108
GlaI	GCGC	1 cut(s)	1158
GsaI	CCCAGC	3 cut(s)	59, 673, 1179
HaeIII	GGCC	4 cut(s)	264, 435, 728, 1031
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	1159
Hin1II	CATG	4 cut(s)	535, 696, 1100, 1195
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HinfI	GANTC	3 cut(s)	824, 854, 964
HphI	GGTGA	4 cut(s)	212, 383, 833, 904
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	6 cut(s)	183, 354, 513, 635, 742, 1233
Hpy188III	TCNNGA	9 cut(s)	251, 278, 422, 449, 532, 800, 1022, 1051, 1151
Hpy8I	GTNNAC	1 cut(s)	755
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	547, 878, 893, 1076
HpyCH4III	ACNGT	4 cut(s)	133, 304, 647, 1075
HpyCH4V	TGCA	9 cut(s)	67, 116, 553, 584, 689, 1121, 1202, 1256, 1292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 698, 953, 1262, 1295
HpyF3I	CTNAG	9 cut(s)	267, 438, 678, 885, 960, 972, 990, 1092, 1230
Hsp92II	CATG	4 cut(s)	535, 696, 1100, 1195
HspAI	GCGC	1 cut(s)	1157
KflI	GGGWCCC	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	72, 178, 349, 784, 1274
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	6 cut(s)	42, 130, 301, 736, 1130, 1144
MalI	GATC	5 cut(s)	74, 180, 351, 786, 1276
MboI	GATC	5 cut(s)	72, 178, 349, 784, 1274
MboII	GAAGA	6 cut(s)	102, 215, 386, 755, 1091, 1250
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	72, 1274
MhlI	GDGCHC	2 cut(s)	624, 670
MluCI	AATT	7 cut(s)	483, 558, 574, 592, 981, 1011, 1207
MroXI	GAANNNNTTC	2 cut(s)	828, 1086
MseI	TTAA	3 cut(s)	984, 1070, 1300
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	89, 698, 953, 1262, 1295
NdeII	GATC	5 cut(s)	72, 178, 349, 784, 1274
NlaIII	CATG	4 cut(s)	535, 696, 1100, 1195
NlaIV	GGNNCC	5 cut(s)	74, 667, 729, 779, 780
PagI	TCATGA	1 cut(s)	531
PasI	CCCWGGG	1 cut(s)	710
PdmI	GAANNNNTTC	2 cut(s)	828, 1086
PfeI	GAWTC	3 cut(s)	824, 854, 964
PpuMI	RGGWCCY	1 cut(s)	778
PshBI	ATTAAT	1 cut(s)	984
PsiI	TTATAA	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	709
PspFI	CCCAGC	3 cut(s)	55, 669, 1175
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	5 cut(s)	74, 667, 729, 779, 780
PspPI	GGNCC	6 cut(s)	263, 434, 638, 727, 778, 1029
PspPPI	RGGWCCY	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	72, 1274
SaqAI	TTAA	3 cut(s)	984, 1070, 1300
Sau3AI	GATC	5 cut(s)	72, 178, 349, 784, 1274
Sau96I	GGNCC	6 cut(s)	263, 434, 638, 727, 778, 1029
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	2 cut(s)	624, 670
SfaNI	GCATC	6 cut(s)	42, 130, 301, 736, 1130, 1144
SfcI	CTRYAG	1 cut(s)	950
SinI	GGWCC	2 cut(s)	638, 778
Sse9I	AATT	7 cut(s)	483, 558, 574, 592, 981, 1011, 1207
SsiI	CCGC	6 cut(s)	76, 81, 84, 174, 345, 1006
StyD4I	CCNGG	1 cut(s)	709
TaaI	ACNGT	4 cut(s)	133, 304, 647, 1075
TaqI	TCGA	2 cut(s)	279, 450
TasI	AATT	7 cut(s)	483, 558, 574, 592, 981, 1011, 1207
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	824, 854, 964
Tru1I	TTAA	3 cut(s)	984, 1070, 1300
Tru9I	TTAA	3 cut(s)	984, 1070, 1300
TscAI	CASTG	3 cut(s)	138, 309, 686
TspDTI	ATGAA	2 cut(s)	520, 726
TspGWI	ACGGA	1 cut(s)	1114
TspRI	CASTG	3 cut(s)	138, 309, 686
VpaK11BI	GGWCC	2 cut(s)	638, 778
VspI	ATTAAT	1 cut(s)	984
XagI	CCTNNNNNAGG	2 cut(s)	161, 332
XmnI	GAANNNNTTC	2 cut(s)	828, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.