Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Forward (+)

9142465 .. 9147430

Gene Structure 4966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTTGGGAATTTTAAGGCAAAAAGTGGGAGCTGGAAGCTCATCAGCTATGATTTTGGGGCAGAGGATCCGCCCCGCCACGTCGGCAATGAGGGGTTTAGCATCTTCGGCGAAAGAGATGACAGTGAGGGATGCTCTAAACTCTGCGCTCGATGAGGAAATGTCCGCGGACCCAAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAATATCAAGGTGCTTACAAGATAACCAAAGGACTTCTGGACAAGTATGGCCCTGACAGGGTTCGTGATACCCCAATCACCGAGGCTGGGTTTACAGGGATTGGAGTTGGTGCTGCTTACTATGGTTTGAAACCTGTTATAGAGTTTATGACCTTTAACTTCTCAATGCAGGCAATTGACCACATCATCAATTCTGCTGCAAAATCAAACTATATGTCTGCTGGCCAAATAAATGTGCCCATTGTTTTCAGAGGACCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCATTCTCAATGTTATGCAGCATGGTATGCAACCTGCCCTGGGTTGAAAGTTTTGACTCCTTATTCGTCTGAAGATGCTCGTGGACTCTTAAAAGCTGCCATCAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGATATTATATGGTGAGTCATTTCCCATTTCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATTGGAAAAGCTAAGATTGAGAGAGAAGGAAAGGATGTCACTATTACAGCTTTCTCAAAAATGGTTGGCTATTCTCTACAGGCTGCTGAGATACTCGCTAAGGAAGGAATCCGTGCTGAGGTCATAAATTTGCGGTCAATTCGTCCTCTCGACAGGAAAACTATCAATGATTCAGTCAGGAAAACCAACAGACTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGCGCATCTGTTGTTGAGGATAGCTTTGGTTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGCGACTGGCTGTTCCTCAGGTCGAAGATATTGTTCGTGCAGCAAAGAGAGCATGCTACAGAGCTTCCTCATTGGCTGCAAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

374

Amino Acids

39.98

Weight (kDa)

5.83

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	39 - 213	1.8e-43	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	233 - 355	3.2e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	940
Acc36I	ACCTGC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	1 cut(s)	167
AciI	CCGC	5 cut(s)	70, 75, 165, 167, 826
AclWI	GGATC	3 cut(s)	61, 74, 599
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	9, 820
AcuI	CTGAAG	2 cut(s)	582, 684
AfiI	CCNNNNNNNGG	5 cut(s)	262, 291, 531, 811, 917
AgeI	ACCGGT	1 cut(s)	979
AgsI	TTSAA	4 cut(s)	334, 538, 623, 899
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	9 cut(s)	32, 39, 47, 587, 662, 704, 743, 960, 1097
AluI	AGCT	9 cut(s)	32, 39, 47, 587, 662, 704, 743, 960, 1097
AlwI	GGATC	3 cut(s)	61, 74, 599
AoxI	GGCC	2 cut(s)	253, 427
ApoI	RAATTY	2 cut(s)	9, 820
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 436, 538, 570
AsiGI	ACCGGT	1 cut(s)	979
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	148, 941
AspS9I	GGNCC	4 cut(s)	169, 254, 458, 598
AsuHPI	GGTGA	4 cut(s)	203, 274, 653, 901
AvaII	GGWCC	3 cut(s)	169, 458, 598
AxyI	CCTNAGG	1 cut(s)	1050
BaeGI	GKGCMC	2 cut(s)	444, 490
BalI	TGGCCA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	570
BbvCI	CCTCAGC	2 cut(s)	810, 912
BccI	CCATC	2 cut(s)	181, 599
BciT130I	CCWGG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	770, 1090
BfuAI	ACCTGC	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	3 cut(s)	169, 458, 598
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	4 cut(s)	169, 254, 458, 598
BmiI	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	5 cut(s)	110, 121, 556, 950, 964
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
Bpu10I	CCTNAGC	3 cut(s)	792, 810, 912
BsaJI	CCNNGG	4 cut(s)	165, 285, 529, 530
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	5 cut(s)	262, 291, 531, 811, 917
Bse118I	RCCGGY	1 cut(s)	979
Bse1I	ACTGG	3 cut(s)	678, 891, 1044
Bse21I	CCTNAGG	1 cut(s)	1050
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	4 cut(s)	165, 285, 529, 530
BseGI	GGATG	2 cut(s)	136, 733
BseLI	CCNNNNNNNGG	5 cut(s)	262, 291, 531, 811, 917
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	4 cut(s)	771, 801, 926, 1064
BseNI	ACTGG	3 cut(s)	678, 891, 1044
BseSI	GKGCMC	2 cut(s)	444, 490
BseYI	CCCAGC	3 cut(s)	290, 489, 995
BsgI	GTGCAG	1 cut(s)	1092
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	255, 429
BshNI	GGYRCC	1 cut(s)	485
BshTI	ACCGGT	1 cut(s)	979
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	5 cut(s)	262, 291, 531, 811, 917
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	255, 429
Bsp1286I	GDGCHC	2 cut(s)	444, 490
Bsp143I	GATC	2 cut(s)	66, 604
BspACI	CCGC	5 cut(s)	70, 75, 165, 167, 826
BspANI	GGCC	2 cut(s)	255, 429
BspCNI	CTCAG	4 cut(s)	772, 802, 925, 1063
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	3 cut(s)	61, 74, 599
BspT107I	GGYRCC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	979
BsrI	ACTGG	3 cut(s)	678, 891, 1044
BssAI	RCCGGY	1 cut(s)	979
BssECI	CCNNGG	4 cut(s)	165, 285, 529, 530
BssMI	GATC	2 cut(s)	66, 604
BssSI	CACGAG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	124, 467, 895
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	375, 427, 1087
BstDEI	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	136, 733
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	148, 941
BstKTI	GATC	2 cut(s)	69, 607
BstMBI	GATC	2 cut(s)	66, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	1089
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	2 cut(s)	770, 1090
BstSLI	GKGCMC	2 cut(s)	444, 490
BstUI	CGCG	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	1050
BsuRI	GGCC	2 cut(s)	255, 429
BtgI	CCRYGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	136, 733
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	375, 427, 1087
CfoI	GCGC	2 cut(s)	148, 941
Cfr10I	RCCGGY	1 cut(s)	979
Cfr13I	GGNCC	4 cut(s)	169, 254, 458, 598
Cfr42I	CCGCGG	1 cut(s)	168
CspAI	ACCGGT	1 cut(s)	979
CviAII	CATG	4 cut(s)	513, 917, 1012, 1086
DdeI	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
DpnI	GATC	2 cut(s)	68, 606
DpnII	GATC	2 cut(s)	66, 604
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	59
Eco47I	GGWCC	3 cut(s)	169, 458, 598
Eco57I	CTGAAG	2 cut(s)	582, 684
Eco81I	CCTNAGG	1 cut(s)	1050
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	4 cut(s)	516, 920, 1015, 1089
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	4 cut(s)	512, 916, 1011, 1085
FauI	CCCGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	143, 740
FspI	TGCGCA	1 cut(s)	940
GlaI	GCGC	2 cut(s)	147, 940
GsaI	CCCAGC	3 cut(s)	294, 493, 999
HaeIII	GGCC	2 cut(s)	255, 429
HapII	CCGG	1 cut(s)	980
HhaI	GCGC	2 cut(s)	148, 941
Hin1II	CATG	4 cut(s)	516, 920, 1015, 1089
Hin6I	GCGC	2 cut(s)	146, 939
HinP1I	GCGC	2 cut(s)	146, 939
HinfI	GANTC	6 cut(s)	547, 576, 644, 674, 801, 863
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	4 cut(s)	203, 274, 653, 901
Hpy166II	GTNNAC	2 cut(s)	297, 575
Hpy188I	TCNGA	2 cut(s)	455, 562
Hpy188III	TCNNGA	6 cut(s)	242, 269, 671, 842, 871, 971
Hpy8I	GTNNAC	2 cut(s)	297, 575
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	713, 791, 896
HpyCH4III	ACNGT	3 cut(s)	124, 467, 895
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	8 cut(s)	373, 404, 509, 521, 977, 1022, 1073, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
HpyF3I	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	516, 920, 1015, 1089
HspAI	GCGC	2 cut(s)	146, 939
KflI	GGGWCCC	1 cut(s)	598
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	66, 604
LmnI	GCTCC	2 cut(s)	29, 1033
LweI	GCATC	5 cut(s)	110, 121, 556, 950, 964
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	730, 889
MalI	GATC	2 cut(s)	68, 606
MboI	GATC	2 cut(s)	66, 604
MboII	GAAGA	5 cut(s)	96, 206, 575, 911, 1070
MfeI	CAATTG	2 cut(s)	378, 693
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	444, 490
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	8 cut(s)	9, 378, 394, 693, 820, 831, 990, 1027
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	3 cut(s)	541, 570, 653
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	4 cut(s)	14, 360, 581, 1120
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	167, 662
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	2 cut(s)	378, 693
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
NdeII	GATC	2 cut(s)	66, 604
NlaIII	CATG	4 cut(s)	516, 920, 1015, 1089
NlaIV	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
NmuCI	GTSAC	2 cut(s)	730, 889
NsbI	TGCGCA	1 cut(s)	940
NspI	RCATGY	1 cut(s)	1089
PaeI	GCATGC	1 cut(s)	1089
PasI	CCCWGGG	1 cut(s)	530
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	674, 801, 863
PinAI	ACCGGT	1 cut(s)	979
PleI	GAGTC	3 cut(s)	541, 570, 652
PpsI	GAGTC	3 cut(s)	541, 570, 652
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	3 cut(s)	290, 489, 995
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
PspPI	GGNCC	4 cut(s)	169, 254, 458, 598
PspPPI	RGGWCCY	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	662
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	14, 360, 581, 1120
Sau3AI	GATC	2 cut(s)	66, 604
Sau96I	GGNCC	4 cut(s)	169, 254, 458, 598
SchI	GAGTC	3 cut(s)	541, 570, 653
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	444, 490
SfaNI	GCATC	5 cut(s)	110, 121, 556, 950, 964
SfcI	CTRYAG	2 cut(s)	770, 1090
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	169, 458, 598
SphI	GCATGC	1 cut(s)	1089
Sse9I	AATT	8 cut(s)	9, 378, 394, 693, 820, 831, 990, 1027
SsiI	CCGC	5 cut(s)	70, 75, 165, 167, 826
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	3 cut(s)	124, 467, 895
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	150, 843, 1056
TasI	AATT	8 cut(s)	9, 378, 394, 693, 820, 831, 990, 1027
TfiI	GAWTC	3 cut(s)	674, 801, 863
Tru1I	TTAA	4 cut(s)	14, 360, 581, 1120
Tru9I	TTAA	4 cut(s)	14, 360, 581, 1120
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	2 cut(s)	730, 889
Tsp45I	GTSAC	2 cut(s)	730, 889
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	3 cut(s)	169, 458, 598
XapI	RAATTY	2 cut(s)	9, 820
XceI	RCATGY	1 cut(s)	1089
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.