Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Reverse (-)

23450447 .. 23455632

Gene Structure 5186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTGGGGATTTTAAGGCAAAAAGTGGGAGCTGGAAGCTCATCTGCTATGATTTTGGGGCAGTCCATGCAGAGGATCCGCCCCACCACATCGGCATTGAGAGCTTTTTCATCTTCCGCAAAAGAGATGACAGTGAGGGATGCTTTAAACTCTGCACTCGATGAGGAAATGTCTGCAGACCCGAAAGTGTTCTTGATGGGTGAAGAGGTTGGGGAATACCAAGGTGCTTACAAGATATCCAAAGGACTTCTCGACAAGTATGGCCCTGACAGAGTTCTTGATACCCCCATCACGGAGGCTGGGTTCACTGGGATTGGAGTTGGTGCTGCTTACTATGGTTTGAAACCTGTTGTAGAGTTTATGACCTTTAACTTCTCAATGCAGGCAATTGACCACATCATCAATTCTGCAGCAAAATCAAATTATATGTCTGCAGGCCAAATAAATGTCCCCATTGTTTTCAGAGGACCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAATGTTATGCAGCATGGTATGCTGCCGTCCCTGGGTTGAAAGTTTTGAGCCCTTACTCATCTGAAGATGCTCGTGGGCTCCTAAAAGCTGCCATTAGGGACCCTGATCCTGTTGTTTTCCTTGAGAATGAGTTGCTATATGGTGAGTCATTTCCTGTTTCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATAGGGAAAGCTAAGATTGAGAAAGAAGGAAAGGATGTCACTATTACAGCTTTTTCAAAAATGGTCGGCTATGCTCTGCAGGCGGCTGAGATACTCGCTAAGGAAGGAATCAGTGCTGAGGTCATAAATTTGCGGTCAATTCGTCCTCTGGACAGGAACACCATCAATGCTTCAGTCAGGAAAACCAACAGGCTGGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAAATCTGCACATCTGTTGTTGAGGATAGCTTTGGCTATCTTGATGCACCGGTTGAGAGAATTGCTGGGGCTGATGTTCCGATGCCTTATGCTGCTAATTTGGAGAGATTGGCTGTTCCTCAGGTAGAAGACATTGTTCGTGCGGCAAAGAGAGCGTGCTACAGATCGGCGTCATTGGCTGCAAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

377

Amino Acids

40.13

Weight (kDa)

5.48

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	5 cut(s)	79, 117, 785, 835, 1082
AclWI	GGATC	3 cut(s)	70, 83, 608
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	3 cut(s)	591, 693, 858
AcyI	GRCGYC	1 cut(s)	1109
AfiI	CCNNNNNNNGG	4 cut(s)	72, 292, 540, 926
AgeI	ACCGGT	1 cut(s)	988
AgsI	TTSAA	4 cut(s)	343, 547, 759, 908
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	8 cut(s)	32, 39, 104, 596, 671, 713, 752, 969
AluI	AGCT	8 cut(s)	32, 39, 104, 596, 671, 713, 752, 969
AlwI	GGATC	3 cut(s)	70, 83, 608
AoxI	GGCC	2 cut(s)	262, 436
ApeKI	GCWGC	9 cut(s)	326, 410, 479, 482, 518, 530, 596, 1031, 1118
ApoI	RAATTY	1 cut(s)	829
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsiGI	ACCGGT	1 cut(s)	988
Asp700I	GAANNNNTTC	2 cut(s)	188, 915
AspS9I	GGNCC	3 cut(s)	263, 467, 607
AsuHPI	GGTGA	2 cut(s)	212, 662
AvaII	GGWCC	2 cut(s)	467, 607
AxyI	CCTNAGG	1 cut(s)	1059
BaeGI	GKGCMC	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	560, 588
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	1074
BbvCI	CCTCAGC	2 cut(s)	819, 921
BbvI	GCAGC	9 cut(s)	313, 422, 466, 469, 517, 530, 583, 1018, 1105
BccI	CCATC	3 cut(s)	190, 296, 872
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	540
BfmI	CTRYAG	5 cut(s)	174, 408, 432, 779, 1099
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	2 cut(s)	467, 607
BmgT120I	GGNCC	3 cut(s)	263, 467, 607
BmiI	GGNNCC	5 cut(s)	77, 496, 587, 608, 609
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	130, 565, 973, 1011
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	1074
Bpu10I	CCTNAGC	3 cut(s)	801, 819, 921
BpuEI	CTTGAG	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	1109
BsaJI	CCNNGG	3 cut(s)	220, 538, 539
BsaWI	WCCGGW	1 cut(s)	988
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 292, 540, 926
Bse118I	RCCGGY	1 cut(s)	988
Bse1I	ACTGG	2 cut(s)	313, 687
Bse21I	CCTNAGG	1 cut(s)	1059
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	220, 538, 539
BseGI	GGATG	2 cut(s)	145, 742
BseLI	CCNNNNNNNGG	4 cut(s)	72, 292, 540, 926
BseMII	CTCAG	4 cut(s)	780, 810, 935, 1073
BseNI	ACTGG	2 cut(s)	313, 687
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	9 cut(s)	313, 422, 466, 469, 517, 530, 583, 1018, 1105
BseYI	CCCAGC	3 cut(s)	299, 498, 1004
BsgI	GTGCAG	2 cut(s)	138, 931
BshFI	GGCC	2 cut(s)	264, 438
BshNI	GGYRCC	1 cut(s)	494
BshTI	ACCGGT	1 cut(s)	988
BsiSI	CCGG	1 cut(s)	989
BslFI	GGGAC	3 cut(s)	434, 521, 620
BslI	CCNNNNNNNGG	4 cut(s)	72, 292, 540, 926
BsmFI	GGGAC	3 cut(s)	434, 521, 620
BsnI	GGCC	2 cut(s)	264, 438
Bsp1286I	GDGCHC	3 cut(s)	499, 560, 588
Bsp143I	GATC	3 cut(s)	75, 613, 1103
BspACI	CCGC	5 cut(s)	79, 117, 785, 835, 1082
BspANI	GGCC	2 cut(s)	264, 438
BspCNI	CTCAG	4 cut(s)	781, 811, 934, 1072
BspLI	GGNNCC	5 cut(s)	77, 496, 587, 608, 609
BspMAI	CTGCAG	4 cut(s)	178, 412, 436, 783
BspPI	GGATC	3 cut(s)	70, 83, 608
BspT107I	GGYRCC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	988
BsrI	ACTGG	2 cut(s)	313, 687
BssAI	RCCGGY	1 cut(s)	988
BssECI	CCNNGG	3 cut(s)	220, 538, 539
BssMI	GATC	3 cut(s)	75, 613, 1103
BssNI	GRCGYC	1 cut(s)	1109
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	3 cut(s)	133, 476, 904
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	1109
BstAPI	GCANNNNNTGC	2 cut(s)	67, 527
BstC8I	GCNNGC	4 cut(s)	384, 436, 783, 1096
BstDEI	CTNAG	6 cut(s)	714, 789, 801, 819, 921, 1059
BstF5I	GGATG	2 cut(s)	145, 742
BstKTI	GATC	3 cut(s)	78, 616, 1106
BstMBI	GATC	3 cut(s)	75, 613, 1103
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 101, 527, 782, 1091, 1115, 1124
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	5 cut(s)	174, 408, 432, 779, 1099
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	9 cut(s)	313, 422, 466, 469, 517, 530, 583, 1018, 1105
BstV2I	GAAGAC	1 cut(s)	1074
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuRI	GGCC	2 cut(s)	264, 438
BtsCI	GGATG	2 cut(s)	145, 742
BtsIMutI	CAGTG	3 cut(s)	138, 306, 820
Cac8I	GCNNGC	4 cut(s)	384, 436, 783, 1096
Cfr10I	RCCGGY	1 cut(s)	988
Cfr13I	GGNCC	3 cut(s)	263, 467, 607
CseI	GACGC	1 cut(s)	1098
CspAI	ACCGGT	1 cut(s)	988
CviAII	CATG	3 cut(s)	67, 522, 926
DdeI	CTNAG	6 cut(s)	714, 789, 801, 819, 921, 1059
DpnI	GATC	3 cut(s)	77, 615, 1105
DpnII	GATC	3 cut(s)	75, 613, 1103
DraI	TTTAAA	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	560, 588
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	467, 607
Eco57I	CTGAAG	3 cut(s)	591, 693, 858
Eco81I	CCTNAGG	1 cut(s)	1059
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	2 cut(s)	560, 588
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	70, 525, 929
FaqI	GGGAC	3 cut(s)	434, 521, 620
FatI	CATG	3 cut(s)	66, 521, 925
FokI	GGATG	2 cut(s)	152, 749
FriOI	GRGCYC	2 cut(s)	560, 588
GsaI	CCCAGC	3 cut(s)	303, 502, 1008
HaeIII	GGCC	2 cut(s)	264, 438
HapII	CCGG	1 cut(s)	989
HgaI	GACGC	1 cut(s)	1098
Hin1I	GRCGYC	1 cut(s)	1109
Hin1II	CATG	3 cut(s)	70, 525, 929
HinfI	GANTC	3 cut(s)	653, 683, 810
HpaII	CCGG	1 cut(s)	989
HphI	GGTGA	2 cut(s)	212, 662
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	3 cut(s)	464, 571, 1020
Hpy188III	TCNNGA	7 cut(s)	193, 251, 278, 680, 851, 880, 980
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	707, 722, 800, 905
HpyCH4III	ACNGT	3 cut(s)	133, 476, 904
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 101, 527, 782, 1091, 1115, 1124
HpyF3I	CTNAG	6 cut(s)	714, 789, 801, 819, 921, 1059
Hsp92I	GRCGYC	1 cut(s)	1109
Hsp92II	CATG	3 cut(s)	70, 525, 929
KflI	GGGWCCC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	75, 613, 1103
LmnI	GCTCC	2 cut(s)	29, 591
Lsp1109I	GCAGC	9 cut(s)	313, 422, 466, 469, 517, 530, 583, 1018, 1105
LweI	GCATC	4 cut(s)	130, 565, 973, 1011
MaeIII	GTNAC	2 cut(s)	739, 898
MalI	GATC	3 cut(s)	77, 615, 1105
MboI	GATC	3 cut(s)	75, 613, 1103
MboII	GAAGA	5 cut(s)	105, 215, 584, 920, 1079
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	3 cut(s)	499, 560, 588
MluCI	AATT	7 cut(s)	387, 403, 421, 829, 840, 999, 1036
MlyI	GAGTC	1 cut(s)	662
MroXI	GAANNNNTTC	2 cut(s)	188, 915
MseI	TTAA	4 cut(s)	14, 146, 369, 1129
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	989
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	7 cut(s)	67, 101, 527, 782, 1091, 1115, 1124
NdeII	GATC	3 cut(s)	75, 613, 1103
NlaIII	CATG	3 cut(s)	70, 525, 929
NlaIV	GGNNCC	5 cut(s)	77, 496, 587, 608, 609
NmuCI	GTSAC	1 cut(s)	739
PasI	CCCWGGG	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	188, 915
PfeI	GAWTC	2 cut(s)	683, 810
PinAI	ACCGGT	1 cut(s)	988
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	3 cut(s)	299, 498, 1004
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	5 cut(s)	77, 496, 587, 608, 609
PspPI	GGNCC	3 cut(s)	263, 467, 607
PspPPI	RGGWCCY	1 cut(s)	607
PstI	CTGCAG	4 cut(s)	178, 412, 436, 783
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	671
SaqAI	TTAA	4 cut(s)	14, 146, 369, 1129
Sau3AI	GATC	3 cut(s)	75, 613, 1103
Sau96I	GGNCC	3 cut(s)	263, 467, 607
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	3 cut(s)	499, 560, 588
SfaNI	GCATC	4 cut(s)	130, 565, 973, 1011
SfcI	CTRYAG	5 cut(s)	174, 408, 432, 779, 1099
SinI	GGWCC	2 cut(s)	467, 607
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	7 cut(s)	387, 403, 421, 829, 840, 999, 1036
SsiI	CCGC	5 cut(s)	79, 117, 785, 835, 1082
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	133, 476, 904
TaqI	TCGA	2 cut(s)	159, 252
TasI	AATT	7 cut(s)	387, 403, 421, 829, 840, 999, 1036
TauI	GCSGC	2 cut(s)	788, 1085
TfiI	GAWTC	2 cut(s)	683, 810
Tru1I	TTAA	4 cut(s)	14, 146, 369, 1129
Tru9I	TTAA	4 cut(s)	14, 146, 369, 1129
TscAI	CASTG	3 cut(s)	138, 313, 820
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	9 cut(s)	326, 410, 479, 482, 518, 530, 596, 1031, 1118
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	138, 313, 820
VpaK11BI	GGWCC	2 cut(s)	467, 607
XapI	RAATTY	1 cut(s)	829
XmnI	GAANNNNTTC	2 cut(s)	188, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.