Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001635

Physical Location & Seq

Genomic Coordinates Reverse (-)

40164421 .. 40168562

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGTTCCCTCAGAAATGAACCAGACAGAGATGACAAGGAGGAGGAGGCAGAGGAGCCCATTTTAGCAGAGCAAACCCAGAGATTCTGTATGTTTCCCATTCGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTATGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGACTGACTCCGAGAAACACTTTATAAGCCATGTCCTGGCATTTTTTGCCGCATCAGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAGCTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTAGAGACATACATCAAGGATCCTAAAGAGAAGCACAGATTGTTCAATGCAATTGAAAAGATTCCTTGTGTCTCTAGGAAGGCCAAGTGGGCTTTACATTGGATAAACAGTTCAAATTCGTTTGCAGAGAGACTTGTTGCTTTCGCATGTGTTGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTAAAAAAGAGGGGACTAATGCCAGGTTTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCACTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAGAAGCAACTTAATCCGGAAAAAGTTCATGGAATTATACATGAAGCTGTCGAAATTGAGACCGAGTTTGTTTGTGATGCCCTCCCATGTGCATTGATTGGCATGAACTCAGCTCTCATGAGCCAGTACATAAAATTTGTTGCCGATCGACTCTTGGTTGCATTAGGTTATGAGAAGAAGTACAATGTGGAAAATCCTTTTGATTGGATGGAGTTCATTTCTTTACAAGGGAAGACAAATTTCTTTGAGAAAAGGGTGGGCGACTATCAAAAAGCATCTGTTATGTCGAGCCTCCAAGATGGCGGAAAGAATTTCGTCTTCAAGATGGATGAGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

341

Amino Acids

39.41

Weight (kDa)

5.02

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	28 - 294	4.3e-119	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33490 AT2G33490 AT2G33490
fragaria_vesca	FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_6g54020 FvH4_6g54020 FvH4_6g54020
malus_domestica	MD09G1006200.v1.1 MD13G1125400.v1.1 MD16G1126200.v1.1 MD17G1010200.v1.1
prunus_persica	Prupe.1G220000_v2.0.a1 Prupe.3G310800_v2.0.a1 Prupe.3G310800_v2.0.a1
pyrus_communis	pycom111g00450 pycom13g10930 pycom13g10940 pycom16g10730 pycom17g00470
rosa_chinensis	RchiOBHm_Chr2g0176201 RchiOBHm_Chr4g0429401
rosa_laevigata	RLG00000007073 RLG00000022389
rosa_multiflora	Rmu_sc0000363.1_g000044 Rmu_sc0003708.1_g000020 Rmu_sc0009677.1_g000013 Rmu_sc0009677.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076680 Rroxscaffold_5G00371040
rosa_rugosa	Rorug02G0591700 Rorug04G0235800 Rorug04G0235800
rosa_samantha	Rh2AG670300 Rh2BG681800 Rh2CG644600 Rh2DG695400 Rh4AG291500 Rh4BG297200 Rh4CG312800 Rh4DG294300
rosa_wichuraiana	Rw2G054980 Rw4G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	238, 576
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	2 cut(s)	252, 987
AclWI	GGATC	2 cut(s)	398, 411
AcsI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
AfaI	GTAC	6 cut(s)	128, 186, 374, 674, 812, 866
AfiI	CCNNNNNNNGG	2 cut(s)	238, 576
AgsI	TTSAA	6 cut(s)	308, 430, 440, 498, 539, 1006
AjnI	CCWGG	3 cut(s)	177, 237, 601
AloI	GAACNNNNNNTCC	2 cut(s)	478, 510
AluBI	AGCT	6 cut(s)	343, 378, 561, 625, 731, 797
AluI	AGCT	6 cut(s)	343, 378, 561, 625, 731, 797
Alw26I	GTCTC	4 cut(s)	383, 460, 508, 737
AlwI	GGATC	2 cut(s)	398, 411
Ama87I	CYCGRG	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	2 cut(s)	465, 643
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
Asp700I	GAANNNNTTC	2 cut(s)	444, 708
AspS9I	GGNCC	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	2 cut(s)	923, 994
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	254, 886, 977, 1003
BciT130I	CCWGG	3 cut(s)	179, 239, 603
BcoDI	GTCTC	4 cut(s)	383, 460, 508, 737
BfaI	CTAG	4 cut(s)	144, 459, 633, 1024
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	2 cut(s)	252, 285
BlsI	GCNGC	2 cut(s)	253, 286
Bme1390I	CCNGG	3 cut(s)	179, 239, 603
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	3 cut(s)	7, 57, 405
BmrFI	CCNGG	3 cut(s)	179, 239, 603
BmsI	GCATC	3 cut(s)	263, 751, 968
BpiI	GAAGAC	2 cut(s)	923, 994
Bpu10I	CCTNAGC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 576
Bse1I	ACTGG	1 cut(s)	808
Bse3DI	GCAATG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	3 cut(s)	179, 239, 603
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	187, 897, 1018
BseLI	CCNNNNNNNGG	2 cut(s)	238, 576
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	5 cut(s)	25, 150, 357, 567, 807
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	4 cut(s)	56, 59, 68, 176
BseXI	GCAGC	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	2 cut(s)	467, 645
BsiEI	CGRYCG	1 cut(s)	832
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	238, 576
BsmAI	GTCTC	4 cut(s)	383, 460, 508, 737
BsmFI	GGGAC	1 cut(s)	606
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	467, 645
Bso31I	GGTCTC	1 cut(s)	737
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	700
Bsp1407I	TGTACA	4 cut(s)	126, 184, 372, 672
Bsp143I	GATC	3 cut(s)	169, 403, 829
BspACI	CCGC	2 cut(s)	252, 987
BspANI	GGCC	2 cut(s)	467, 645
BspCNI	CTCAG	5 cut(s)	24, 151, 358, 566, 806
BspEI	TCCGGA	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	7, 57, 405
BspPI	GGATC	2 cut(s)	398, 411
BspTNI	GGTCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	4 cut(s)	126, 184, 372, 672
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	169, 403, 829
Bst2UI	CCWGG	3 cut(s)	179, 239, 603
Bst4CI	ACNGT	3 cut(s)	494, 653, 677
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	4 cut(s)	126, 184, 372, 672
BstC8I	GCNNGC	3 cut(s)	345, 380, 664
BstDEI	CTNAG	5 cut(s)	11, 159, 366, 553, 793
BstF5I	GGATG	3 cut(s)	187, 897, 1018
BstKTI	GATC	3 cut(s)	172, 406, 832
BstMAI	GTCTC	4 cut(s)	383, 460, 508, 737
BstMBI	GATC	3 cut(s)	169, 403, 829
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 473
BstNI	CCWGG	3 cut(s)	179, 239, 603
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	177, 237, 601
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	923, 994
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	467, 645
BtsCI	GGATG	3 cut(s)	187, 897, 1018
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	197, 649
Cac8I	GCNNGC	3 cut(s)	345, 380, 664
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	1 cut(s)	643
Csp6I	GTAC	6 cut(s)	127, 185, 373, 673, 811, 865
CviAII	CATG	7 cut(s)	233, 531, 713, 725, 771, 787, 802
CviQI	GTAC	6 cut(s)	127, 185, 373, 673, 811, 865
DdeI	CTNAG	5 cut(s)	11, 159, 366, 553, 793
DpnI	GATC	3 cut(s)	171, 405, 831
DpnII	GATC	3 cut(s)	169, 403, 829
EciI	GGCGGA	1 cut(s)	1002
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	3 cut(s)	177, 237, 601
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	7 cut(s)	236, 534, 716, 728, 774, 790, 805
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	7 cut(s)	232, 530, 712, 724, 770, 786, 801
Fnu4HI	GCNGC	2 cut(s)	252, 285
FokI	GGATG	2 cut(s)	194, 904
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	252, 285
FspBI	CTAG	4 cut(s)	144, 459, 633, 1024
GluI	GCNGC	2 cut(s)	252, 285
HaeIII	GGCC	2 cut(s)	467, 645
HapII	CCGG	1 cut(s)	701
Hin1II	CATG	7 cut(s)	236, 534, 716, 728, 774, 790, 805
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	5 cut(s)	84, 209, 445, 543, 834
HpaII	CCGG	1 cut(s)	701
Hpy188I	TCNGA	5 cut(s)	14, 204, 214, 259, 367
Hpy188III	TCNNGA	7 cut(s)	151, 314, 555, 633, 701, 802, 1006
HpyAV	CCTTC	4 cut(s)	127, 457, 533, 677
HpyCH4III	ACNGT	3 cut(s)	494, 653, 677
HpyCH4V	TGCA	6 cut(s)	287, 347, 434, 509, 776, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 473
HpyF3I	CTNAG	5 cut(s)	11, 159, 366, 553, 793
Hsp92II	CATG	7 cut(s)	236, 534, 716, 728, 774, 790, 805
Kpn2I	TCCGGA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	169, 403, 829
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	263, 751, 968
MaeI	CTAG	4 cut(s)	144, 459, 633, 1024
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	3 cut(s)	171, 405, 831
MboI	GATC	3 cut(s)	169, 403, 829
MboII	GAAGA	5 cut(s)	538, 541, 871, 928, 994
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
MlyI	GAGTC	2 cut(s)	203, 828
MroI	TCCGGA	1 cut(s)	700
MroXI	GAANNNNTTC	2 cut(s)	444, 708
MseI	TTAA	1 cut(s)	696
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	3 cut(s)	179, 239, 603
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	3 cut(s)	179, 239, 603
MwoI	GCNNNNNNNGC	2 cut(s)	248, 473
NdeII	GATC	3 cut(s)	169, 403, 829
NlaIII	CATG	7 cut(s)	236, 534, 716, 728, 774, 790, 805
NlaIV	GGNNCC	3 cut(s)	7, 57, 405
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	1 cut(s)	801
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	2 cut(s)	444, 708
PfeI	GAWTC	3 cut(s)	84, 445, 543
PflMI	CCANNNNNTGG	2 cut(s)	238, 576
PkrI	GCNGC	2 cut(s)	253, 286
Ple19I	CGATCG	1 cut(s)	832
PleI	GAGTC	2 cut(s)	203, 828
PpsI	GAGTC	2 cut(s)	203, 828
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	3 cut(s)	177, 237, 601
PspGI	CCWGG	3 cut(s)	177, 237, 601
PspN4I	GGNNCC	3 cut(s)	7, 57, 405
PspPI	GGNCC	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	403
PvuI	CGATCG	1 cut(s)	832
RsaI	GTAC	6 cut(s)	128, 186, 374, 674, 812, 866
RsaNI	GTAC	6 cut(s)	127, 185, 373, 673, 811, 865
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	2 cut(s)	252, 285
Sau3AI	GATC	3 cut(s)	169, 403, 829
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	203, 828
ScrFI	CCNGG	3 cut(s)	179, 239, 603
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	9 cut(s)	168, 345, 380, 563, 607, 627, 733, 799, 853
SfaNI	GCATC	3 cut(s)	263, 751, 968
Sse9I	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
SsiI	CCGC	2 cut(s)	252, 987
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	4 cut(s)	144, 459, 633, 1024
StyD4I	CCNGG	3 cut(s)	177, 237, 601
TaaI	ACNGT	3 cut(s)	494, 653, 677
TaqI	TCGA	3 cut(s)	735, 832, 971
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
TatI	WGTACW	6 cut(s)	126, 184, 372, 672, 810, 864
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	84, 445, 543
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	2 cut(s)	197, 656
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	33, 350, 701, 741, 803, 889
TspRI	CASTG	2 cut(s)	197, 656
Van91I	CCANNNNNTGG	2 cut(s)	238, 576
XapI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	1 cut(s)	534
XmnI	GAANNNNTTC	2 cut(s)	444, 708
XspI	CTAG	4 cut(s)	144, 459, 633, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.