Rorug02G0591700

protein At2g33490-like isoform

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001635
Physical Location & Seq
Forward (+)
71387090 .. 71387968
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0591700.1

Sequence Viewer

Length: 879 bp
ATGCTCCCATCCCCATCCACAATTTCATTGCCCAACAACTATGAATTTTTCTTCTTCACCAAAGCAGTAGCCTCTTCAGCACCAACAAGCCGGCACTGTTTTGTGGCCGGTTTGTGTACGGGGAATTGTCACTTGGCTTTTTGTAGGCCAACAGATGAATCATGGACTCTCATAAAGGCAGAAGACATCGGCGAGCTTGTGTTTTTCGATATAGAAATAATTGATGCAAAATTATATGCTGCAACTTGGAAGGAACCGGAAGTTTCAATAGTAGTGTTTGAAATCCAAGATGCTGAAGATGCCAATAAGCCCCTTAGCTATAGGGTTGAGAGTTTGAACTTGCTTCGTTCATGGCCGACTCCGGAGTGGTGGATGGCTGATGGACTCCACGTTAATGACGGGATTTACTTGGCAAAAGATTCTTCATCAAAGGAGTTATTTATGATTTTTCATAGGAGAAGTTTTGCCCTTGAGGAGGATCCAATAATCTCTTGGGAGGAGATCTTATATTGTCAAAATTTCAGCATCCCACCTAGGACAGAAGGATTTCGAGTGTTCAAACTAGAGTGCAATGTTAATGGTTCACGGTGGATAGAAATTGAGGACCTGGGTGATCGAATATTGTTTATCAGTAACTTTAGCAACATATTCATCCCGGCAACTAATAGCCTAAATCTTCATAACCCCGCTAACTCGCTTGGAAGAAACTGTATCTATTTCGCTTTTGATAATCCCTGTTTATCATCATCATCAAGTGGGCGCGACGTTGGGGTACTTTCCTTCGAAGATCGGCATGTTGTGCATTTCAGTTTCTCCAACGATCCTTCTCAAACCCAACTATTCACTGAACCTGTCTGGTTCACGCCCAATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAR BAR_3

Protein Analysis

292

Amino Acids

33.34

Weight (kDa)

4.73

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 6 - 258 6.3e-25 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 873
AccII CGCG 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 1 cut(s) 687
AclWI GGATC 3 cut(s) 473, 486, 815
AcoI YGGCCR 2 cut(s) 105, 353
AcsI RAATTY 2 cut(s) 44, 517
AcuI CTGAAG 2 cut(s) 60, 315
AfaI GTAC 2 cut(s) 118, 774
AfiI CCNNNNNNNGG 2 cut(s) 475, 873
AgsI TTSAA 4 cut(s) 267, 281, 337, 559
AjnI CCWGG 1 cut(s) 606
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 196, 318
AluI AGCT 2 cut(s) 196, 318
AlwI GGATC 3 cut(s) 473, 486, 815
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 3 cut(s) 105, 146, 353
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 44, 517
Asp700I GAANNNNTTC 1 cut(s) 546
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 1 cut(s) 762
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 49, 623
AsuII TTCGAA 1 cut(s) 783
AvaII GGWCC 1 cut(s) 604
AvrII CCTAGG 1 cut(s) 533
BamHI GGATCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 226
BccI CCATC 4 cut(s) 16, 22, 367, 374
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 1 cut(s) 656
BfaI CTAG 2 cut(s) 534, 563
BfmI CTRYAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 501
BisI GCNGC 1 cut(s) 240
BlnI CCTAGG 1 cut(s) 533
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 608, 656
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 255, 480
BmrFI CCNGG 2 cut(s) 608, 656
BmsI GCATC 4 cut(s) 214, 280, 289, 534
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 656
BsaJI CCNNGG 3 cut(s) 533, 607, 872
BsaWI WCCGGW 2 cut(s) 256, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 873
Bse118I RCCGGY 2 cut(s) 90, 107
Bse3DI GCAATG 2 cut(s) 26, 577
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 533, 607, 872
BseGI GGATG 5 cut(s) 8, 14, 378, 525, 651
BseLI CCNNNNNNNGG 2 cut(s) 475, 873
BseMI GCAATG 2 cut(s) 26, 577
BseRI GAGGAG 2 cut(s) 488, 512
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 3 cut(s) 107, 148, 355
BsiSI CCGG 5 cut(s) 91, 108, 257, 362, 656
BslI CCNNNNNNNGG 2 cut(s) 475, 873
BsnI GGCC 3 cut(s) 107, 148, 355
Bsp119I TTCGAA 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 5 cut(s) 478, 501, 613, 787, 820
BspACI CCGC 1 cut(s) 687
BspANI GGCC 3 cut(s) 107, 148, 355
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 255, 480
BspPI GGATC 3 cut(s) 473, 486, 815
BspT104I TTCGAA 1 cut(s) 783
BsrDI GCAATG 2 cut(s) 26, 577
BsrFI RCCGGY 2 cut(s) 90, 107
BssAI RCCGGY 2 cut(s) 90, 107
BssECI CCNNGG 3 cut(s) 533, 607, 872
BssMI GATC 5 cut(s) 478, 501, 613, 787, 820
BssT1I CCWWGG 2 cut(s) 533, 872
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 3 cut(s) 98, 588, 710
Bst6I CTCTTC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 799
BstBI TTCGAA 1 cut(s) 783
BstC8I GCNNGC 2 cut(s) 92, 194
BstDEI CTNAG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 5 cut(s) 8, 14, 378, 525, 651
BstFNI CGCG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 5 cut(s) 481, 504, 616, 790, 823
BstMBI GATC 5 cut(s) 478, 501, 613, 787, 820
BstMWI GCNNNNNNNGC 3 cut(s) 77, 299, 799
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 606, 654
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 478, 501
BstYI RGATCY 2 cut(s) 478, 501
BsuRI GGCC 3 cut(s) 107, 148, 355
BtsCI GGATG 5 cut(s) 8, 14, 378, 525, 651
BtsIMutI CAGTG 2 cut(s) 94, 843
Cac8I GCNNGC 2 cut(s) 92, 194
CfoI GCGC 1 cut(s) 762
Cfr10I RCCGGY 2 cut(s) 90, 107
Cfr13I GGNCC 1 cut(s) 604
Csp6I GTAC 2 cut(s) 117, 773
CviAII CATG 3 cut(s) 162, 351, 794
CviQI GTAC 2 cut(s) 117, 773
DdeI CTNAG 1 cut(s) 314
DpnI GATC 5 cut(s) 480, 503, 615, 789, 822
DpnII GATC 5 cut(s) 478, 501, 613, 787, 820
EaeI YGGCCR 2 cut(s) 105, 353
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 533, 872
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 60, 315
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 2 cut(s) 533, 872
ErhI CCWWGG 2 cut(s) 533, 872
FaeI CATG 3 cut(s) 165, 354, 797
FatI CATG 3 cut(s) 161, 350, 793
FauI CCCGC 1 cut(s) 694
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 3 cut(s) 385, 512, 638
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 534, 563
GlaI GCGC 1 cut(s) 761
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 107, 148, 355
HapII CCGG 5 cut(s) 91, 108, 257, 362, 656
HhaI GCGC 1 cut(s) 762
Hin1II CATG 3 cut(s) 165, 354, 797
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HinfI GANTC 5 cut(s) 158, 166, 358, 384, 419
HpaII CCGG 5 cut(s) 91, 108, 257, 362, 656
HphI GGTGA 2 cut(s) 49, 623
Hpy166II GTNNAC 3 cut(s) 117, 584, 861
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 3 cut(s) 117, 584, 861
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 4 cut(s) 244, 536, 790, 834
HpyCH4III ACNGT 3 cut(s) 98, 588, 710
HpyCH4IV ACGT 2 cut(s) 390, 765
HpyCH4V TGCA 4 cut(s) 227, 242, 570, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 299, 799
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 390, 765
Hsp92II CATG 3 cut(s) 165, 354, 797
HspAI GCGC 1 cut(s) 760
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 5 cut(s) 478, 501, 613, 787, 820
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 214, 280, 289, 534
MaeI CTAG 2 cut(s) 534, 563
MaeII ACGT 2 cut(s) 390, 765
MaeIII GTNAC 2 cut(s) 128, 632
MalI GATC 5 cut(s) 480, 503, 615, 789, 822
MboI GATC 5 cut(s) 478, 501, 613, 787, 820
MboII GAAGA 9 cut(s) 43, 46, 66, 194, 308, 414, 668, 714, 797
MflI RGATCY 2 cut(s) 478, 501
MluCI AATT 7 cut(s) 21, 44, 124, 219, 230, 517, 597
MlyI GAGTC 3 cut(s) 160, 352, 378
MmeI TCCRAC 1 cut(s) 840
MnlI CCTC 5 cut(s) 82, 466, 469, 490, 595
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 90
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 2 cut(s) 393, 576
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 5 cut(s) 91, 108, 257, 362, 656
MspR9I CCNGG 2 cut(s) 608, 656
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 3 cut(s) 77, 299, 799
NaeI GCCGGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 656
NdeII GATC 5 cut(s) 478, 501, 613, 787, 820
NgoMIV GCCGGC 1 cut(s) 90
NlaIII CATG 3 cut(s) 165, 354, 797
NlaIV GGNNCC 2 cut(s) 255, 480
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 783
PdiI GCCGGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 158, 419
PflMI CCANNNNNTGG 1 cut(s) 873
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 3 cut(s) 160, 352, 378
PpsI GAGTC 3 cut(s) 160, 352, 378
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 255, 480
PspPI GGNCC 1 cut(s) 604
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 2 cut(s) 478, 501
RsaI GTAC 2 cut(s) 118, 774
RsaNI GTAC 2 cut(s) 117, 773
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 2 cut(s) 393, 576
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 478, 501, 613, 787, 820
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 3 cut(s) 160, 352, 378
ScrFI CCNGG 2 cut(s) 608, 656
SetI ASST 7 cut(s) 198, 320, 393, 535, 609, 768, 853
SfaNI GCATC 4 cut(s) 214, 280, 289, 534
SfcI CTRYAG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 783
SinI GGWCC 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 7 cut(s) 21, 44, 124, 219, 230, 517, 597
SsiI CCGC 1 cut(s) 687
SspI AATATT 1 cut(s) 621
SspMI CTAG 2 cut(s) 534, 563
StyD4I CCNGG 2 cut(s) 606, 654
StyI CCWWGG 2 cut(s) 533, 872
TaaI ACNGT 3 cut(s) 98, 588, 710
TaiI ACGT 2 cut(s) 393, 768
TaqI TCGA 4 cut(s) 207, 550, 616, 783
TasI AATT 7 cut(s) 21, 44, 124, 219, 230, 517, 597
TfiI GAWTC 2 cut(s) 158, 419
Tru1I TTAA 2 cut(s) 393, 576
Tru9I TTAA 2 cut(s) 393, 576
TscAI CASTG 2 cut(s) 101, 850
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 8 cut(s) 15, 57, 171, 339, 414, 440, 640, 668
TspRI CASTG 2 cut(s) 101, 850
Van91I CCANNNNNTGG 1 cut(s) 873
VpaK11BI GGWCC 1 cut(s) 604
XagI CCTNNNNNAGG 1 cut(s) 473
XapI RAATTY 2 cut(s) 44, 517
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
XmaJI CCTAGG 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 2 cut(s) 534, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.