Rroxscaffold_5G00371040

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
52668946 .. 52674845
5900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371040.1

Sequence Viewer

Length: 1416 bp
ATGAAGACCTCTCTCCGAAAGTTGCGAGGTCTCGCACTTCACAAGCACGAAGCTAAGGACCACCGGATCGATCTTCAGCCGCATGCTCAATTGGACGAGCTCGCTCAGGCTTCTCAGGACATGCAAGATATGAGGGATTGCTATGATAGCTTACTTTCCGCAGCTGCAGCGACAGCAAATAGCGCTTATGAATTTTCAGAGTCATTGCGGGAAATGGGTGCTTGTCTTCTTCAGAAAACTGCATTAAATGATGATGAAGATGGTGGTAAAGTTCTGCTAAAGCTAGGGAAATTGCAGTATGAACTCCACAAACTTGTTGATAGCTATCGCTCTCATATATTCCAGACTATCGCAGTTCCATCAGAATCTCTTCTCAATGAACTTCAAACAGTTGAGGAGATGAAGAACCAATGCGATGAGAAAAGAGATATATATGAGTATATGTTAAAAAGACAGAAAGAAAAAGGGAGGTTAAGAGGTGGAAAAGGAGAGACCTTTTCTGTGCAGCAAATACAACTTGCTCGTGATGAATATGATGACGAGGCAAGTTTATTTGTTTTCCGGTTGAAATCTCTGAAGCAAGGACAATCTCGTAGTCTGCTCACACAGGCAGCTCGGCATCATGCTGCTCAGTTGTGCTTCTTCAAGAAGGCACTTAGTACTGTTGAAGCAGTAGAACCACATGTTAAATTGGTAACCGAACAGCAGCATATTGATTACAAGTTCAATGGGCTAGATGATGAAGGGGATGGTGACAATGACGATGATGATAATGATGACGATGATTCCTCTTTTGTGAATGATGATGGAGAATTAAGCTTTGACTATGGACATAATGAGCGAGAGCCAGATCTTTCTACAACACGAAGCTCAATGGAGTCGGATCAGGTGGACCTCACCTTTCCCAAGATATCCAGTGTGGAAGCTATGAAGGACAGAATTCGCAGGAATTCATTTTCGTTTAAGGGTAGGGCAGTCAGCCAATCTGCCCCACTATTTCCTGAAAATAAGTTGGACCGCGCTGAAAAAATAAGACACATGCAGCCATCATTGTCCAGGAAGTTCCACTCGTATGTACTACCCACACCTGTTGATACAAACCATTCAGTTTCTACTGGACCCGGTAATTCAGTTCCCCAAACTGTACAGTCAAGTTTAAGTGGCCTAAAGCAGAATTTGTGGCATTCATCACCCTTGGAACCAAATAATGAAAAGATCATGGGAGATAAGAAACCTGCTGGACCAACAGTAATAAATGCACAGTCAGTCCTCAGAGAGAGCAATAATAATATTGCATCCCATCGATTACCCCCTCCTCTTGCAGGTCGTATGGTGTATATAGGGATGGATCCCCTGGCTGCTTTTGATTCTAAAAAAAATAAAAAGACAGGCATTTTCTGGTCCTCTGACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.07

Weight (kDa)

5.85

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1243, 1313
AccII CGCG 1 cut(s) 1020
AciI CCGC 4 cut(s) 80, 159, 208, 1018
AclWI GGATC 4 cut(s) 74, 891, 1343, 1356
AcsI RAATTY 4 cut(s) 191, 939, 949, 1174
AcuI CTGAAG 3 cut(s) 59, 215, 596
AfaI GTAC 3 cut(s) 661, 1077, 1146
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 1322, 1410
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 5 cut(s) 386, 568, 646, 668, 727
AjnI CCWGG 2 cut(s) 1055, 1353
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 35, 485
AlwI GGATC 4 cut(s) 74, 891, 1343, 1356
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 1 cut(s) 1162
ApeKI GCWGC 9 cut(s) 161, 164, 167, 505, 611, 626, 706, 1042, 1358
ApoI RAATTY 4 cut(s) 191, 939, 949, 1174
Asp700I GAANNNNTTC 1 cut(s) 369
AspLEI GCGC 2 cut(s) 185, 1022
AspS9I GGNCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
AsuC2I CCSGG 1 cut(s) 1122
AsuHPI GGTGA 3 cut(s) 764, 889, 1182
AvaII GGWCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
BamHI GGATCC 1 cut(s) 1348
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 522
BbsI GAAGAC 2 cut(s) 11, 218
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 9 cut(s) 151, 173, 179, 517, 613, 623, 718, 1054, 1345
BccI CCATC 7 cut(s) 254, 367, 743, 800, 1054, 1308, 1339
BciT130I CCWGG 2 cut(s) 1057, 1355
BcnI CCSGG 1 cut(s) 1122
BcoDI GTCTC 2 cut(s) 35, 485
BfaI CTAG 2 cut(s) 284, 734
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 2 cut(s) 1243, 1313
BglII AGATCT 1 cut(s) 850
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 3 cut(s) 1057, 1122, 1355
Bme18I GGWCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
BmgT120I GGNCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
BmiI GGNNCC 3 cut(s) 1120, 1200, 1350
BmrFI CCNGG 3 cut(s) 1057, 1122, 1355
BmsI GCATC 2 cut(s) 628, 1304
BpiI GAAGAC 2 cut(s) 11, 218
Bpu10I CCTNAGC 2 cut(s) 54, 105
BpuMI CCSGG 1 cut(s) 1122
Bsa29I ATCGAT 2 cut(s) 69, 1303
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 2 cut(s) 35, 485
BsaJI CCNNGG 2 cut(s) 1194, 1353
BsaWI WCCGGW 2 cut(s) 63, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 1322, 1410
Bse1I ACTGG 2 cut(s) 915, 1120
Bse3DI GCAATG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 2 cut(s) 1057, 1355
BseCI ATCGAT 2 cut(s) 69, 1303
BseDI CCNNGG 2 cut(s) 1194, 1353
BseGI GGATG 3 cut(s) 754, 1295, 1350
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 1322, 1410
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 4 cut(s) 119, 128, 644, 1285
BseNI ACTGG 2 cut(s) 915, 1120
BseRI GAGGAG 2 cut(s) 410, 1305
BseXI GCAGC 9 cut(s) 151, 173, 179, 517, 613, 623, 718, 1054, 1345
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 1 cut(s) 1164
BshVI ATCGAT 2 cut(s) 69, 1303
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 3 cut(s) 64, 562, 1122
BslI CCNNNNNNNGG 2 cut(s) 1322, 1410
BsmAI GTCTC 2 cut(s) 35, 485
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 1 cut(s) 1164
Bso31I GGTCTC 2 cut(s) 35, 485
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 1144
Bsp143I GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
BspACI CCGC 4 cut(s) 80, 159, 208, 1018
BspANI GGCC 1 cut(s) 1164
BspCNI CTCAG 4 cut(s) 118, 127, 643, 1284
BspDI ATCGAT 2 cut(s) 69, 1303
BspFNI CGCG 1 cut(s) 1020
BspLI GGNNCC 3 cut(s) 1120, 1200, 1350
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 2 cut(s) 1243, 1313
BspPI GGATC 4 cut(s) 74, 891, 1343, 1356
BspTNI GGTCTC 2 cut(s) 35, 485
BsrDI GCAATG 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 1144
BsrI ACTGG 2 cut(s) 915, 1120
BssECI CCNNGG 2 cut(s) 1194, 1353
BssMI GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 1194
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 2 cut(s) 1057, 1355
Bst4CI ACNGT 6 cut(s) 391, 664, 1144, 1149, 1249, 1263
Bst6I CTCTTC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 1144
BstC8I GCNNGC 2 cut(s) 84, 102
BstDEI CTNAG 6 cut(s) 54, 105, 114, 630, 656, 1271
BstEII GGTNACC 1 cut(s) 694
BstENI CCTNNNNNAGG 2 cut(s) 1320, 1408
BstF5I GGATG 3 cut(s) 754, 1295, 1350
BstFNI CGCG 1 cut(s) 1020
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 185, 1022
BstKTI GATC 6 cut(s) 69, 73, 853, 886, 1218, 1351
BstMAI GTCTC 2 cut(s) 35, 485
BstMBI GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
BstMWI GCNNNNNNNGC 4 cut(s) 147, 167, 173, 182
BstNI CCWGG 2 cut(s) 1057, 1355
BstNSI RCATGY 4 cut(s) 86, 124, 686, 1042
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 1055, 1120, 1353
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 9 cut(s) 151, 173, 179, 517, 613, 623, 718, 1054, 1345
BstV2I GAAGAC 2 cut(s) 11, 218
BstX2I RGATCY 2 cut(s) 850, 1348
BstYI RGATCY 2 cut(s) 850, 1348
Bsu15I ATCGAT 2 cut(s) 69, 1303
BsuRI GGCC 1 cut(s) 1164
BsuTUI ATCGAT 2 cut(s) 69, 1303
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 3 cut(s) 754, 1295, 1350
BtsIMutI CAGTG 1 cut(s) 922
BveI ACCTGC 2 cut(s) 1243, 1313
Cac8I GCNNGC 2 cut(s) 84, 102
CfoI GCGC 2 cut(s) 185, 1022
Cfr13I GGNCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
ClaI ATCGAT 2 cut(s) 69, 1303
Csp6I GTAC 3 cut(s) 660, 1076, 1145
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 6 cut(s) 83, 121, 623, 683, 1039, 1219
CviQI GTAC 3 cut(s) 660, 1076, 1145
DdeI CTNAG 6 cut(s) 54, 105, 114, 630, 656, 1271
DpnI GATC 6 cut(s) 68, 72, 852, 885, 1217, 1350
DpnII GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 1194
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 2 cut(s) 35, 485
Eco32I GATATC 1 cut(s) 912
Eco47I GGWCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
Eco47III AGCGCT 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 3 cut(s) 59, 215, 596
Eco91I GGTNACC 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 100
EcoNI CCTNNNNNAGG 2 cut(s) 1320, 1408
EcoO65I GGTNACC 1 cut(s) 694
EcoRI GAATTC 2 cut(s) 939, 949
EcoRII CCWGG 2 cut(s) 1055, 1353
EcoRV GATATC 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 1194
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 1194
FaeI CATG 6 cut(s) 86, 124, 626, 686, 1042, 1222
FatI CATG 6 cut(s) 82, 120, 622, 682, 1038, 1218
FauI CCCGC 1 cut(s) 201
FokI GGATG 3 cut(s) 761, 1282, 1357
FriOI GRGCYC 1 cut(s) 102
FspBI CTAG 2 cut(s) 284, 734
GlaI GCGC 2 cut(s) 184, 1021
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 1 cut(s) 1164
HapII CCGG 3 cut(s) 64, 562, 1122
HhaI GCGC 2 cut(s) 185, 1022
Hin1II CATG 6 cut(s) 86, 124, 626, 686, 1042, 1222
Hin6I GCGC 2 cut(s) 183, 1020
HinP1I GCGC 2 cut(s) 183, 1020
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 5 cut(s) 200, 365, 785, 878, 1367
HpaII CCGG 3 cut(s) 64, 562, 1122
HphI GGTGA 3 cut(s) 764, 889, 1182
Hpy166II GTNNAC 1 cut(s) 892
Hpy188I TCNGA 8 cut(s) 17, 199, 234, 364, 576, 883, 1274, 1408
Hpy188III TCNNGA 5 cut(s) 116, 343, 524, 646, 1001
Hpy8I GTNNAC 1 cut(s) 892
HpyAV CCTTC 3 cut(s) 643, 737, 925
HpyCH4III ACNGT 6 cut(s) 391, 664, 1144, 1149, 1249, 1263
HpyCH4V TGCA 9 cut(s) 124, 167, 242, 295, 505, 1042, 1259, 1295, 1322
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 167, 173, 182
HpyF3I CTNAG 6 cut(s) 54, 105, 114, 630, 656, 1271
Hsp92II CATG 6 cut(s) 86, 124, 626, 686, 1042, 1222
HspAI GCGC 2 cut(s) 183, 1020
Kzo9I GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
Lsp1109I GCAGC 9 cut(s) 151, 173, 179, 517, 613, 623, 718, 1054, 1345
LweI GCATC 2 cut(s) 628, 1304
MaeI CTAG 2 cut(s) 284, 734
MaeIII GTNAC 2 cut(s) 694, 752
MalI GATC 6 cut(s) 68, 72, 852, 885, 1217, 1350
MboI GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
MboII GAAGA 8 cut(s) 16, 65, 218, 221, 269, 362, 415, 634
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 2 cut(s) 850, 1348
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 9 cut(s) 89, 191, 290, 689, 812, 939, 949, 1126, 1174
MlyI GAGTC 2 cut(s) 209, 887
MmeI TCCRAC 2 cut(s) 861, 993
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 7 cut(s) 245, 446, 473, 687, 815, 963, 1157
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 3 cut(s) 64, 562, 1122
MspR9I CCNGG 3 cut(s) 1057, 1122, 1355
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 2 cut(s) 1057, 1355
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 4 cut(s) 147, 167, 173, 182
NciI CCSGG 1 cut(s) 1122
NdeII GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
NlaIII CATG 6 cut(s) 86, 124, 626, 686, 1042, 1222
NlaIV GGNNCC 3 cut(s) 1120, 1200, 1350
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 4 cut(s) 86, 124, 686, 1042
PaeI GCATGC 1 cut(s) 86
PciI ACATGT 1 cut(s) 682
PctI GAATGC 1 cut(s) 1183
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 365, 785, 1367
PfoI TCCNGGA 1 cut(s) 1055
PleI GAGTC 2 cut(s) 208, 886
PpsI GAGTC 2 cut(s) 208, 886
PscI ACATGT 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 1055, 1353
PspEI GGTNACC 1 cut(s) 694
PspGI CCWGG 2 cut(s) 1055, 1353
PspN4I GGNNCC 3 cut(s) 1120, 1200, 1350
PspPI GGNCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 850, 1348
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 3 cut(s) 661, 1077, 1146
RsaNI GTAC 3 cut(s) 660, 1076, 1145
RseI CAYNNNNRTG 1 cut(s) 1071
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 7 cut(s) 245, 446, 473, 687, 815, 963, 1157
Sau3AI GATC 6 cut(s) 66, 70, 850, 883, 1215, 1348
Sau96I GGNCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 2 cut(s) 209, 887
ScrFI CCNGG 3 cut(s) 1057, 1122, 1355
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 628, 1304
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
SmiMI CAYNNNNRTG 1 cut(s) 1071
SphI GCATGC 1 cut(s) 86
Sse9I AATT 9 cut(s) 89, 191, 290, 689, 812, 939, 949, 1126, 1174
SsiI CCGC 4 cut(s) 80, 159, 208, 1018
SspI AATATT 1 cut(s) 1291
SspMI CTAG 2 cut(s) 284, 734
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 1055, 1120, 1353
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 6 cut(s) 391, 664, 1144, 1149, 1249, 1263
TaqI TCGA 2 cut(s) 69, 1303
TasI AATT 9 cut(s) 89, 191, 290, 689, 812, 939, 949, 1126, 1174
TatI WGTACW 3 cut(s) 659, 1075, 1144
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 3 cut(s) 365, 785, 1367
Tru1I TTAA 7 cut(s) 245, 446, 473, 687, 815, 963, 1157
Tru9I TTAA 7 cut(s) 245, 446, 473, 687, 815, 963, 1157
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 1 cut(s) 752
TseI GCWGC 9 cut(s) 161, 164, 167, 505, 611, 626, 706, 1042, 1358
Tsp45I GTSAC 1 cut(s) 752
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 6 cut(s) 58, 892, 1015, 1118, 1241, 1401
XagI CCTNNNNNAGG 2 cut(s) 1320, 1408
XapI RAATTY 4 cut(s) 191, 939, 949, 1174
XceI RCATGY 4 cut(s) 86, 124, 686, 1042
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 2 cut(s) 284, 734
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.