AT2G33490

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14183263 .. 14188105
4843 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33490.2

Sequence Viewer

Length: 1872 bp
ATGAAAACCTCTCTCCGACGGTTACGAGGTGTGCTTCACAAGCATGAATCTAAAGACCGGAGAGATCTTCGAGCTCTGGTTCAGAAAGATGAGCTTGCCCAAGCTTCTCAGGACGTAGAAGACATGAGAGATTGCTATGATAGCTTGCTCAATGCCGCTGCTGCTACTGCCAATAGTGCTTATGAATTTTCTGAATCTTTGCGAGAACTAGGTGCTTGTCTTCTTGAGAAAACTGCGCTAAATGATGATGAAGAAAGTGGTAGAGTGTTGATTATGCTGGGAAAGTTGCAGTTTGAATTGCAAAAACTTGTTGATAAATATCGTTCTCATATTTTTCAAACAATCACAATCCCCTCAGAGTCACTTCTAAATGAACTCCGCATAGTTGAGGAGATGCAGCGGCTTTGTGATGAGAAAAGGAATGTTTATGAAGGCATGCTTACAAGACAAAGAGAGAAAGGGAGATCAAAGGGTGGGAAAGGAGAAACTTTTTCGCCACAGCAACTACAAGAAGCTCATGATGATTATGAAAACGAGACGACTTTATTTGTTTTCCGTTTAAAATCCCTGAAACAAGGGCAAACACGTAGTCTTTTGACTCAGGCAGCAAGGCACCATGCAGCACAGTTATGCTTCTTCAAGAAGGCTCTTAGTTCCCTTGAAGAAGTGGACCCACATGTACAGATGGTAACCGAGTCACAGCATATTGATTACCATTTCAGCGGATTAGAAGATGATGACGGGGATGATGAAATTGAAAACAATGAGAACGATGGTTCTGAGGTGCATGATGATGGAGAGTTGAGTTTTGAATATAGAGTTAATGACAAGGACCAAGATGCGGATTCTTCAGCTGGTGGCTCCTCAGAGTTGGGTAACTCAGACATCACATTTCCACAAATTGGAGGACCATATACTGCACAGGAAAATGAGGAAGGAAATTACAGAAAATCTCATTCGTTTAGGAGAGATGTAAGGGCAGTGAGCCAATCAGCACCACTTTTTCCCGAGAACCGCACAACTCCTCCTTCAGAAAAGCTGTTACGGATGCGATCAACTCTGACACGGAAATTCAACACTTATGCATTGCCAACTCCTGTGGAAACAACGAGAAGTCCCTCATCTACTACAAGTCCAGGTCACAAAAACGTGGGGTCATCTAATCCTACAAAGGCAATTACAAAGCAGATTTGGTATTCATCCCCACTTGAAACTCGCGGACCTGCAAAGGTTTCCTCAAGATCAATGGTAGCCTTGAAAGAACAAGTCCTGAGAGAGAGTAACAAGAATACATCTCGGTTGCCTCCGCCTTTAGCAGATGGACTCTTGTTCTCTCGTCTCGGTACACTCAAGAGACGATCCTTCTCTGGTCCACTGACAAGTAAACCGTTACCGAACAAGCCTCTCTCTACAACATCTCACTTATACTCTGGTCCGATCCCAAGGAATCCAGTTTCTAAATTGCCAAAAGTGTCATCATCTCCAACTGCTTCCCCTACATTTGTCTCAACCCCAAAAATAAGTGAGCTCCATGAGCTTCCTAGACCACCACCAAGAAGCTCTACTAAGTCCTCTAGGGAATTGGGATATTCAGCTCCCTTGGTTTCGAGGAGCCAATTGCTTAGTAAACCTCTTATTACAAATTCAGCTTCTCCTCTTCCTATACCACCTGCAATCACTCGTAGCTTCTCTATACCTACTAGCAACCTTAGAGCATCAGATTTAGATATGTCTAAGACAAGTCTGGGCACTAAAAAGTTAGGCACTCCCTCGCCTCCTTTAACCCCAATGTCATTGATCCATCCACCGCCACAGGCTCTTCCCGAACGTGCAGACCACCTAATGATGTCCAAACAAGAGAGGAGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

623

Amino Acids

69.38

Weight (kDa)

8.73

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1678
Acc36I ACCTGC 2 cut(s) 1231, 1678
AccB1I GGYRCC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 902
AccII CGCG 1 cut(s) 1218
AciI CCGC 9 cut(s) 156, 379, 400, 723, 842, 1015, 1218, 1307, 1808
AclWI GGATC 3 cut(s) 1353, 1432, 1792
AcsI RAATTY 3 cut(s) 185, 1070, 1642
AcuI CTGAAG 2 cut(s) 834, 1014
AfaI GTAC 2 cut(s) 681, 1345
AfiI CCNNNNNNNGG 2 cut(s) 841, 902
AflIII ACRYGT 2 cut(s) 584, 676
AgsI TTSAA 9 cut(s) 296, 338, 640, 662, 758, 812, 1075, 1211, 1258
AjnI CCWGG 1 cut(s) 1135
Alw21I GWGCWC 2 cut(s) 76, 1530
Alw26I GTCTC 4 cut(s) 530, 1343, 1348, 1510
AlwI GGATC 3 cut(s) 1353, 1432, 1792
Ama87I CYCGRG 1 cut(s) 1007
ApeKI GCWGC 5 cut(s) 158, 161, 397, 605, 620
ApoI RAATTY 3 cut(s) 185, 1070, 1642
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
BaeGI GKGCMC 1 cut(s) 1751
BanI GGYRCC 1 cut(s) 612
BanII GRGCYC 2 cut(s) 76, 1530
BbsI GAAGAC 2 cut(s) 126, 212
Bbv12I GWGCWC 2 cut(s) 76, 1530
BbvI GCAGC 5 cut(s) 145, 148, 409, 617, 632
BccI CCATC 5 cut(s) 679, 767, 788, 1313, 1809
BciT130I CCWGG 1 cut(s) 1137
BcoDI GTCTC 4 cut(s) 530, 1343, 1348, 1510
BfaI CTAG 4 cut(s) 209, 1542, 1575, 1701
BfuAI ACCTGC 2 cut(s) 1231, 1678
BglII AGATCT 1 cut(s) 64
BisI GCNGC 7 cut(s) 156, 159, 162, 398, 401, 606, 621
BlsI GCNGC 7 cut(s) 157, 160, 163, 399, 402, 607, 622
Bme1390I CCNGG 1 cut(s) 1137
Bme18I GGWCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
BmeT110I CYCGRG 1 cut(s) 1007
BmgT120I GGNCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
BmiI GGNNCC 4 cut(s) 614, 672, 862, 1613
BmrFI CCNGG 1 cut(s) 1137
BmsI GCATC 4 cut(s) 384, 829, 1038, 1724
BpiI GAAGAC 2 cut(s) 126, 212
BpuEI CTTGAG 3 cut(s) 245, 1222, 1334
BsaAI YACGTR 1 cut(s) 587
BsaBI GATNNNNATC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 1442, 1599
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 1009, 1039
Bsc4I CCNNNNNNNGG 2 cut(s) 841, 902
Bse1I ACTGG 1 cut(s) 1451
Bse3DI GCAATG 1 cut(s) 1085
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 2 cut(s) 1442, 1599
BseGI GGATG 4 cut(s) 751, 1053, 1199, 1801
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 841, 902
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 7 cut(s) 122, 369, 614, 771, 879, 894, 1262
BseNI ACTGG 1 cut(s) 1451
BseRI GAGGAG 5 cut(s) 404, 853, 1014, 1624, 1644
BseSI GKGCMC 1 cut(s) 1751
BseXI GCAGC 5 cut(s) 145, 148, 409, 617, 632
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 2 cut(s) 903, 1851
Bsh1236I CGCG 1 cut(s) 1218
BshNI GGYRCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 76, 1530
BsiHKCI CYCGRG 1 cut(s) 1007
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 1101
BslI CCNNNNNNNGG 2 cut(s) 841, 902
BsmAI GTCTC 4 cut(s) 530, 1343, 1348, 1510
BsmBI CGTCTC 3 cut(s) 530, 1343, 1348
BsmFI GGGAC 1 cut(s) 1101
BsoBI CYCGRG 1 cut(s) 1007
Bsp1286I GDGCHC 3 cut(s) 76, 1530, 1751
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
BspACI CCGC 9 cut(s) 156, 379, 400, 723, 842, 1015, 1218, 1307, 1808
BspCNI CTCAG 7 cut(s) 121, 368, 613, 772, 878, 893, 1263
BspFNI CGCG 1 cut(s) 1218
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 4 cut(s) 614, 672, 862, 1613
BspMI ACCTGC 2 cut(s) 1231, 1678
BspPI GGATC 3 cut(s) 1353, 1432, 1792
BspQI GCTCTTC 1 cut(s) 1824
BspT107I GGYRCC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 1085
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 1 cut(s) 1451
BssECI CCNNGG 2 cut(s) 1442, 1599
BssMI GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
BssT1I CCWWGG 2 cut(s) 1442, 1599
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 3 cut(s) 21, 627, 1389
Bst6I CTCTTC 2 cut(s) 1662, 1824
BstAUI TGTACA 1 cut(s) 679
BstBAI YACGTR 1 cut(s) 587
BstC8I GCNNGC 3 cut(s) 96, 146, 437
BstEII GGTNACC 1 cut(s) 688
BstF5I GGATG 4 cut(s) 751, 1053, 1199, 1801
BstFNI CGCG 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 7 cut(s) 67, 467, 1055, 1244, 1361, 1440, 1800
BstMAI GTCTC 4 cut(s) 530, 1343, 1348, 1510
BstMBI GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
BstMWI GCNNNNNNNGC 6 cut(s) 40, 141, 161, 167, 176, 1534
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 2 cut(s) 439, 680
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 1135
BstSLI GKGCMC 1 cut(s) 1751
BstUI CGCG 1 cut(s) 1218
BstV1I GCAGC 5 cut(s) 145, 148, 409, 617, 632
BstV2I GAAGAC 2 cut(s) 126, 212
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtsCI GGATG 4 cut(s) 751, 1053, 1199, 1801
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 2 cut(s) 987, 1373
BveI ACCTGC 2 cut(s) 1231, 1678
Cac8I GCNNGC 3 cut(s) 96, 146, 437
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
Csp6I GTAC 2 cut(s) 680, 1344
CspCI CAANNNNNGTGG 2 cut(s) 1080, 1115
CviAII CATG 8 cut(s) 44, 124, 436, 518, 617, 677, 788, 1532
CviQI GTAC 2 cut(s) 680, 1344
DpnI GATC 7 cut(s) 66, 466, 1054, 1243, 1360, 1439, 1799
DpnII GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 1662, 1824
EarI CTCTTC 2 cut(s) 1662, 1824
EciI GGCGGA 1 cut(s) 1296
Ecl136II GAGCTC 2 cut(s) 74, 1528
Eco130I CCWWGG 2 cut(s) 1442, 1599
Eco24I GRGCYC 2 cut(s) 76, 1530
Eco47I GGWCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
Eco53kI GAGCTC 2 cut(s) 74, 1528
Eco57I CTGAAG 2 cut(s) 834, 1014
Eco88I CYCGRG 1 cut(s) 1007
Eco91I GGTNACC 1 cut(s) 688
EcoICRI GAGCTC 2 cut(s) 74, 1528
EcoO65I GGTNACC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 2 cut(s) 1442, 1599
EcoT22I ATGCAT 1 cut(s) 1087
EcoT38I GRGCYC 2 cut(s) 76, 1530
ErhI CCWWGG 2 cut(s) 1442, 1599
Esp3I CGTCTC 3 cut(s) 530, 1343, 1348
FaeI CATG 8 cut(s) 47, 127, 439, 521, 620, 680, 791, 1535
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 423, 455
FaqI GGGAC 1 cut(s) 1101
FatI CATG 8 cut(s) 43, 123, 435, 517, 616, 676, 787, 1531
Fnu4HI GCNGC 7 cut(s) 156, 159, 162, 398, 401, 606, 621
FokI GGATG 4 cut(s) 758, 1060, 1186, 1788
FriOI GRGCYC 2 cut(s) 76, 1530
Fsp4HI GCNGC 7 cut(s) 156, 159, 162, 398, 401, 606, 621
FspBI CTAG 4 cut(s) 209, 1542, 1575, 1701
GlaI GCGC 1 cut(s) 237
GluI GCNGC 7 cut(s) 156, 159, 162, 398, 401, 606, 621
GsaI CCCAGC 1 cut(s) 281
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 238
Hin1II CATG 8 cut(s) 47, 127, 439, 521, 620, 680, 791, 1535
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 8 cut(s) 47, 194, 359, 598, 695, 845, 1323, 1447
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 5 cut(s) 670, 1346, 1373, 1385, 1628
Hpy188III TCNNGA 9 cut(s) 110, 224, 518, 640, 1007, 1239, 1270, 1351, 1823
Hpy8I GTNNAC 5 cut(s) 670, 1346, 1373, 1385, 1628
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 5 cut(s) 425, 637, 929, 1038, 1372
HpyCH4III ACNGT 3 cut(s) 21, 627, 1389
HpyCH4IV ACGT 4 cut(s) 114, 586, 1149, 1828
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 141, 161, 167, 176, 1534
HpySE526I ACGT 4 cut(s) 114, 586, 1149, 1828
Hsp92II CATG 8 cut(s) 47, 127, 439, 521, 620, 680, 791, 1535
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
LguI GCTCTTC 1 cut(s) 1824
LmnI GCTCC 4 cut(s) 866, 1533, 1600, 1611
Lsp1109I GCAGC 5 cut(s) 145, 148, 409, 617, 632
LweI GCATC 4 cut(s) 384, 829, 1038, 1724
MaeI CTAG 4 cut(s) 209, 1542, 1575, 1701
MaeII ACGT 4 cut(s) 114, 586, 1149, 1828
MaeIII GTNAC 9 cut(s) 21, 360, 688, 696, 875, 1041, 1139, 1280, 1389
MalI GATC 7 cut(s) 66, 466, 1054, 1243, 1360, 1439, 1799
MboI GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
MfeI CAATTG 1 cut(s) 1616
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 3 cut(s) 76, 1530, 1751
MlyI GAGTC 4 cut(s) 368, 592, 704, 1317
MmeI TCCRAC 2 cut(s) 40, 1508
Mph1103I ATGCAT 1 cut(s) 1087
MseI TTAA 4 cut(s) 560, 822, 1781, 1870
MslI CAYNNNNRTG 3 cut(s) 42, 628, 792
MspA1I CMGCKG 4 cut(s) 158, 400, 723, 854
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 1137
MunI CAATTG 1 cut(s) 1616
MvaI CCWGG 1 cut(s) 1137
MvnI CGCG 1 cut(s) 1218
MwoI GCNNNNNNNGC 6 cut(s) 40, 141, 161, 167, 176, 1534
NdeII GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
NlaIII CATG 8 cut(s) 47, 127, 439, 521, 620, 680, 791, 1535
NlaIV GGNNCC 4 cut(s) 614, 672, 862, 1613
NmuCI GTSAC 3 cut(s) 360, 696, 1139
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 2 cut(s) 439, 680
PaeI GCATGC 1 cut(s) 439
PagI TCATGA 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 1678
PciI ACATGT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 1824
PfeI GAWTC 4 cut(s) 47, 194, 845, 1447
PflMI CCANNNNNTGG 1 cut(s) 902
PkrI GCNGC 7 cut(s) 157, 160, 163, 399, 402, 607, 622
PleI GAGTC 4 cut(s) 367, 592, 703, 1317
PpsI GAGTC 4 cut(s) 367, 592, 703, 1317
Ppu21I YACGTR 1 cut(s) 587
PscI ACATGT 1 cut(s) 676
Psp124BI GAGCTC 2 cut(s) 76, 1530
Psp6I CCWGG 1 cut(s) 1135
PspEI GGTNACC 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 4 cut(s) 614, 672, 862, 1613
PspPI GGNCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
PsuI RGATCY 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 2 cut(s) 681, 1345
RsaNI GTAC 2 cut(s) 680, 1344
RseI CAYNNNNRTG 3 cut(s) 42, 628, 792
SacI GAGCTC 2 cut(s) 76, 1530
SapI GCTCTTC 1 cut(s) 1824
SaqAI TTAA 4 cut(s) 560, 822, 1781, 1870
SatI GCNGC 7 cut(s) 156, 159, 162, 398, 401, 606, 621
Sau3AI GATC 7 cut(s) 64, 464, 1052, 1241, 1358, 1437, 1797
Sau96I GGNCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
SchI GAGTC 4 cut(s) 368, 592, 704, 1317
ScrFI CCNGG 1 cut(s) 1137
SduI GDGCHC 3 cut(s) 76, 1530, 1751
SfaNI GCATC 4 cut(s) 384, 829, 1038, 1724
SinI GGWCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
SmiMI CAYNNNNRTG 3 cut(s) 42, 628, 792
SmlI CTYRAG 3 cut(s) 224, 1237, 1349
SmoI CTYRAG 3 cut(s) 224, 1237, 1349
SphI GCATGC 1 cut(s) 439
SsiI CCGC 9 cut(s) 156, 379, 400, 723, 842, 1015, 1218, 1307, 1808
SspMI CTAG 4 cut(s) 209, 1542, 1575, 1701
SstI GAGCTC 2 cut(s) 76, 1530
StyD4I CCNGG 1 cut(s) 1135
StyI CCWWGG 2 cut(s) 1442, 1599
TaaI ACNGT 3 cut(s) 21, 627, 1389
TaiI ACGT 4 cut(s) 117, 589, 1152, 1831
TaqI TCGA 2 cut(s) 70, 1607
TatI WGTACW 1 cut(s) 679
TauI GCSGC 2 cut(s) 158, 403
TfiI GAWTC 4 cut(s) 47, 194, 845, 1447
Tru1I TTAA 4 cut(s) 560, 822, 1781, 1870
Tru9I TTAA 4 cut(s) 560, 822, 1781, 1870
TscAI CASTG 2 cut(s) 987, 1380
TseFI GTSAC 3 cut(s) 360, 696, 1139
TseI GCWGC 5 cut(s) 158, 161, 397, 605, 620
Tsp45I GTSAC 3 cut(s) 360, 696, 1139
TspDTI ATGAA 9 cut(s) 17, 60, 198, 264, 387, 444, 543, 765, 1188
TspGWI ACGGA 3 cut(s) 545, 1060, 1081
TspRI CASTG 2 cut(s) 987, 1380
Van91I CCANNNNNTGG 1 cut(s) 902
VpaK11BI GGWCC 6 cut(s) 670, 832, 908, 1220, 1370, 1433
XapI RAATTY 3 cut(s) 185, 1070, 1642
XceI RCATGY 2 cut(s) 439, 680
XspI CTAG 4 cut(s) 209, 1542, 1575, 1701
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.