Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001635

Physical Location & Seq

Genomic Coordinates Forward (+)

7375929 .. 7378982

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10930.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAAACCTCTCTCAGAAGGCTGCGAGGTTTCGCCCTTCACAAGCACGATGCCAAGGACCGGAGAGATCTCCGCCCGCTGCCGCAATTGGACGAGCTCGCCCAGGCTTCTCAGGATATGCACGATATGAGGGACTGCTATGACAGCTTACTTTCTGCCGCTGCCGCCACGGCTAATAGCGCTTATGAGTTTTCGGAGTCGCTGCGGGAAATGGGTTCTTGTCTTCTTCAGAAAACTGCACTAAATGATGATGAAGAAAGTGGTTCAGTTCTGCTGAAGCTAGGGAAACTGCAATATGAACTCCATAAACTCGTTGATAGCTATCGCTCTCATATATTCCAGACAATTGCAGTTCCATCAGAATCTCTTCTGAATGAACTTCAAACAGTTGAGGAGATGAAGCAACAATGTGATGAAAAAAGAGATGTATATGATTTTATGATAAAGAGATACAAAGAAAAAGGGAGGTCAAGAGGTGGTGGGAAGAGAGAGAGCTTTTCTATGCAGCAAATACAATTGGCTCGCGATGAATATGATGAGGAGGCTACATTATTTGTTTTCCGGTTGAAATCTCTGAAGCAAGGACAATCTCGTAGTCTTCTCACGCAGGCAGCTCGCCATCATGCTGCTCAGTTGTCCTTCTTCAAGAAAGCACTTAGGTCTGTTGAGTCAGTAGAGCCACATGTGAAACTGGTAACTGAGAAGAAGCATATTGATTACGAGTTCCATGGGCTACATGATGAAGGGGATGGTGACAATGATGACGATGAGAATGATGATGATGATAGCATTGATGTGAATGATGATGGAGAATTGAGCTTTGACTTTGGACAACAGGATCGATCAAGATGTTTCTACTTCAAGAAACTCAATGGAGTTGGATCAGGCAGACATTACCTTTCCCAGATTACCGCAGGTGGAAGCTCTCAAGGACAGACTCCGCAGGAATTCGTTTTCATTTCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAR BAR_3

Protein Analysis

323

Amino Acids

36.74

Weight (kDa)

5.43

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33490 AT2G33490 AT2G33490
fragaria_vesca	FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_6g54020 FvH4_6g54020 FvH4_6g54020
malus_domestica	MD09G1006200.v1.1 MD13G1125400.v1.1 MD16G1126200.v1.1 MD17G1010200.v1.1
prunus_persica	Prupe.1G220000_v2.0.a1 Prupe.3G310800_v2.0.a1 Prupe.3G310800_v2.0.a1
pyrus_communis	pycom111g00450 pycom13g10930 pycom13g10940 pycom16g10730 pycom17g00470
rosa_chinensis	RchiOBHm_Chr2g0176201 RchiOBHm_Chr4g0429401
rosa_laevigata	RLG00000007073 RLG00000022389
rosa_multiflora	Rmu_sc0000363.1_g000044 Rmu_sc0003708.1_g000020 Rmu_sc0009677.1_g000013 Rmu_sc0009677.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076680 Rroxscaffold_5G00371040
rosa_rugosa	Rorug02G0591700 Rorug04G0235800 Rorug04G0235800
rosa_samantha	Rh2AG670300 Rh2BG681800 Rh2CG644600 Rh2DG695400 Rh4AG291500 Rh4BG297200 Rh4CG312800 Rh4DG294300
rosa_wichuraiana	Rw2G054980 Rw4G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	905
AccII	CGCG	1 cut(s)	525
AciI	CCGC	8 cut(s)	73, 77, 83, 159, 165, 205, 912, 941
AclWI	GGATC	2 cut(s)	846, 889
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	3 cut(s)	212, 296, 596
AfeI	AGCGCT	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	4 cut(s)	383, 568, 646, 862
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	8 cut(s)	97, 147, 280, 321, 495, 614, 819, 924
AluI	AGCT	8 cut(s)	97, 147, 280, 321, 495, 614, 819, 924
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	846, 889
Aor51HI	AGCGCT	1 cut(s)	181
ApeKI	GCWGC	7 cut(s)	22, 79, 161, 202, 505, 611, 626
ApoI	RAATTY	1 cut(s)	947
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	215, 590
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	7 cut(s)	9, 66, 148, 189, 517, 613, 623
BccI	CCATC	4 cut(s)	364, 627, 743, 800
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	905
BglI	GCCNNNNNGGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	2 cut(s)	215, 590
BpuEI	CTTGAG	1 cut(s)	912
Bsa29I	ATCGAT	1 cut(s)	841
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	54, 102, 168, 727
BsaWI	WCCGGW	2 cut(s)	60, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	841
BseDI	CCNNGG	4 cut(s)	54, 102, 168, 727
BseGI	GGATG	1 cut(s)	754
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	4 cut(s)	28, 125, 644, 690
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	2 cut(s)	407, 554
BseXI	GCAGC	7 cut(s)	9, 66, 148, 189, 517, 613, 623
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	525
BshVI	ATCGAT	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	61, 562
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	67, 838, 842, 881
Bsp19I	CCATGG	1 cut(s)	727
Bsp68I	TCGCGA	1 cut(s)	525
BspACI	CCGC	8 cut(s)	73, 77, 83, 159, 165, 205, 912, 941
BspCNI	CTCAG	4 cut(s)	27, 124, 643, 691
BspDI	ATCGAT	1 cut(s)	841
BspFNI	CGCG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	2 cut(s)	846, 889
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	4 cut(s)	54, 102, 168, 727
BssMI	GATC	4 cut(s)	67, 838, 842, 881
BssT1I	CCWWGG	2 cut(s)	54, 727
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	2 cut(s)	372, 479
BstC8I	GCNNGC	5 cut(s)	77, 99, 523, 609, 616
BstDEI	CTNAG	5 cut(s)	14, 111, 630, 656, 699
BstDSI	CCRYGG	2 cut(s)	168, 727
BstF5I	GGATG	1 cut(s)	754
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	4 cut(s)	70, 841, 845, 884
BstMBI	GATC	4 cut(s)	67, 838, 842, 881
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 164, 170, 179
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	7 cut(s)	9, 66, 148, 189, 517, 613, 623
BstV2I	GAAGAC	2 cut(s)	215, 590
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	841
BsuTUI	ATCGAT	1 cut(s)	841
BtgI	CCRYGG	2 cut(s)	168, 727
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	754
BtuMI	TCGCGA	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	5 cut(s)	77, 99, 523, 609, 616
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	841
CviAII	CATG	4 cut(s)	623, 683, 728, 737
DdeI	CTNAG	5 cut(s)	14, 111, 630, 656, 699
DpnI	GATC	4 cut(s)	69, 840, 844, 883
DpnII	GATC	4 cut(s)	67, 838, 842, 881
Eam1104I	CTCTTC	2 cut(s)	372, 479
EarI	CTCTTC	2 cut(s)	372, 479
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	54, 727
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	3 cut(s)	212, 296, 596
EcoICRI	GAGCTC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	947
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	54, 727
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	2 cut(s)	54, 727
FaeI	CATG	4 cut(s)	626, 686, 731, 740
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	622, 682, 727, 736
FauI	CCCGC	2 cut(s)	84, 198
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	183
HapII	CCGG	2 cut(s)	61, 562
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	626, 686, 731, 740
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	197, 362, 668, 937
HpaII	CCGG	2 cut(s)	61, 562
HphI	GGTGA	1 cut(s)	764
Hpy188I	TCNGA	6 cut(s)	17, 196, 231, 361, 372, 576
Hpy188III	TCNNGA	7 cut(s)	113, 340, 471, 524, 646, 846, 862
HpyAV	CCTTC	4 cut(s)	12, 47, 649, 737
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	121, 239, 292, 350, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 164, 170, 179
HpyF3I	CTNAG	5 cut(s)	14, 111, 630, 656, 699
Hsp92II	CATG	4 cut(s)	626, 686, 731, 740
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	67, 838, 842, 881
Lsp1109I	GCAGC	7 cut(s)	9, 66, 148, 189, 517, 613, 623
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	694, 752
MalI	GATC	4 cut(s)	69, 840, 844, 883
MboI	GATC	4 cut(s)	67, 838, 842, 881
MboII	GAAGA	8 cut(s)	215, 218, 266, 359, 496, 590, 634, 715
MfeI	CAATTG	3 cut(s)	86, 345, 515
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	5 cut(s)	86, 345, 515, 812, 947
MlyI	GAGTC	3 cut(s)	206, 677, 931
MmeI	TCCRAC	1 cut(s)	859
MnlI	CCTC	8 cut(s)	19, 20, 123, 385, 459, 467, 532, 535
MroXI	GAANNNNTTC	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	794
MspA1I	CMGCKG	2 cut(s)	79, 161
MspI	CCGG	2 cut(s)	61, 562
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	3 cut(s)	86, 345, 515
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	4 cut(s)	144, 164, 170, 179
NcoI	CCATGG	1 cut(s)	727
NdeII	GATC	4 cut(s)	67, 838, 842, 881
NlaIII	CATG	4 cut(s)	626, 686, 731, 740
NmuCI	GTSAC	1 cut(s)	752
NruI	TCGCGA	1 cut(s)	525
NspI	RCATGY	1 cut(s)	686
PaqCI	CACCTGC	1 cut(s)	905
PciI	ACATGT	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	3 cut(s)	205, 676, 931
PpsI	GAGTC	3 cut(s)	205, 676, 931
PscI	ACATGT	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	67, 838, 842, 881
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	3 cut(s)	206, 677, 931
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	927
SmoI	CTYRAG	1 cut(s)	927
Sse9I	AATT	5 cut(s)	86, 345, 515, 812, 947
SsiI	CCGC	8 cut(s)	73, 77, 83, 159, 165, 205, 912, 941
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	54, 727
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	841
TasI	AATT	5 cut(s)	86, 345, 515, 812, 947
TauI	GCSGC	3 cut(s)	85, 161, 167
TfiI	GAWTC	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	7 cut(s)	22, 79, 161, 202, 505, 611, 626
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	9 cut(s)	17, 267, 312, 390, 413, 429, 543, 756, 946
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	947
XceI	RCATGY	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.