Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009677.1

Orthogroup ID

OG0001635

Physical Location & Seq

Genomic Coordinates Reverse (-)

44697 .. 45026

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009677.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ctgcgacatctttatcttcatcatacattgttctcttctctcctcctctcaaccgtctcacctcctcttcaattgatcaacgtcttctcaattcgatttcaatttcctctaggtggttccacgcttgaggctgtcgagccacatgttaggttggttacagaggagcaacatactgaataccaatttagtggacttgaagacgatggtgcagatcatggtgagaatagcaacgattctattgaagatggagagttgagttttgactatagaccaagtaagcagggaatggaagtctctgcatcaaggaattcaatggaggtgaagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAR BAR_3

Protein Analysis

109

Amino Acids

12.27

Weight (kDa)

4.8

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33490 AT2G33490 AT2G33490
fragaria_vesca	FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_6g54020 FvH4_6g54020 FvH4_6g54020
malus_domestica	MD09G1006200.v1.1 MD13G1125400.v1.1 MD16G1126200.v1.1 MD17G1010200.v1.1
prunus_persica	Prupe.1G220000_v2.0.a1 Prupe.3G310800_v2.0.a1 Prupe.3G310800_v2.0.a1
pyrus_communis	pycom111g00450 pycom13g10930 pycom13g10940 pycom16g10730 pycom17g00470
rosa_chinensis	RchiOBHm_Chr2g0176201 RchiOBHm_Chr4g0429401
rosa_laevigata	RLG00000007073 RLG00000022389
rosa_multiflora	Rmu_sc0000363.1_g000044 Rmu_sc0003708.1_g000020 Rmu_sc0009677.1_g000013 Rmu_sc0009677.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076680 Rroxscaffold_5G00371040
rosa_rugosa	Rorug02G0591700 Rorug04G0235800 Rorug04G0235800
rosa_samantha	Rh2AG670300 Rh2BG681800 Rh2CG644600 Rh2DG695400 Rh4AG291500 Rh4BG297200 Rh4CG312800 Rh4DG294300
rosa_wichuraiana	Rw2G054980 Rw4G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	71, 101, 197, 242, 312
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	61, 298
ApoI	RAATTY	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	51, 230
BbsI	GAAGAC	2 cut(s)	76, 204
BccI	CCATC	2 cut(s)	197, 239
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	61, 298
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	2 cut(s)	76, 204
BpuEI	CTTGAG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseRI	GAGGAG	4 cut(s)	32, 35, 54, 176
BsgI	GTGCAG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	2 cut(s)	61, 298
BsmBI	CGTCTC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	75, 211
BspLI	GGNNCC	1 cut(s)	118
BssMI	GATC	2 cut(s)	75, 211
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	40, 72
BstKTI	GATC	2 cut(s)	78, 214
BstMAI	GTCTC	2 cut(s)	61, 298
BstMBI	GATC	2 cut(s)	75, 211
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	265
BstV2I	GAAGAC	2 cut(s)	76, 204
BstXI	CCANNNNNNTGG	1 cut(s)	188
CviAII	CATG	2 cut(s)	143, 215
CviJI	RGCY	3 cut(s)	131, 139, 325
CviKI_1	RGCY	3 cut(s)	131, 139, 325
DpnI	GATC	2 cut(s)	77, 213
DpnII	GATC	2 cut(s)	75, 211
Eam1104I	CTCTTC	2 cut(s)	40, 72
EarI	CTCTTC	2 cut(s)	40, 72
EcoRI	GAATTC	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	2 cut(s)	146, 218
FaiI	YATR	5 cut(s)	24, 144, 171, 216, 267
FatI	CATG	2 cut(s)	142, 214
FbaI	TGATCA	1 cut(s)	75
FspBI	CTAG	1 cut(s)	110
Hin1II	CATG	2 cut(s)	146, 218
HinfI	GANTC	1 cut(s)	233
HphI	GGTGA	2 cut(s)	51, 230
Hpy166II	GTNNAC	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	209, 299
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	146, 218
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 211
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	266
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	77, 213
MboI	GATC	2 cut(s)	75, 211
MboII	GAAGA	6 cut(s)	8, 27, 59, 76, 209, 254
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	5 cut(s)	71, 90, 101, 182, 307
MnlI	CCTC	8 cut(s)	53, 56, 72, 75, 117, 121, 154, 310
MunI	CAATTG	1 cut(s)	71
NdeII	GATC	2 cut(s)	75, 211
NlaIII	CATG	2 cut(s)	146, 218
NlaIV	GGNNCC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	233
PscI	ACATGT	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	75, 211
SetI	ASST	6 cut(s)	64, 84, 115, 152, 321, 327
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	71, 90, 101, 182, 307
SspMI	CTAG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	94, 135
TasI	AATT	5 cut(s)	71, 90, 101, 182, 307
TfiI	GAWTC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	8
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.