Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001635

Physical Location & Seq

Genomic Coordinates Forward (+)

7379041 .. 7380158

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGACATAGGCAGACATCATTTTCACGGAAGTTCCACTCATATGTACTACCGACACCAATTGATAAGAGTCCAGTTTCTACTGGATCAGGTATGCCAGTGCCCCACACTGTACAGACAACTTTAAGTGAGCGAACACAGAATTTGTGGCATTCGTCACCCTTGAGACCGGGGAATCAAAAGACGGGAGAGAAGAAAATTGCTGGAACCAATTTTATAGATGTGCAGTCAGTACTCAAAGAGAGCAACAATAATATTGCACCACATCGATTACCCCCTCCTCTCACAGGTCAGGTTTTGTTTTCGGGGCAGGATCCACTGGTTGCTACTGACTTTAAAAAAATAAAAAGGCAAGCATTCTCAGGTCCATTGACAAGTAAGCCTTGGGCTTCTAAACCTGTCCCCTCGGACCATCACCCAATGTTTTCTGGACCTATTTTGCGAAATCCAGGGTCTCAACCTCTGTCAACTTCACCTAAAGTATCTCCAAATGCTTCGCCTACTTTTATGTCCTCTCCTAAAATAAGTGAACTTCATGAGCTTCCTAGGCCACCTGTAGCCTCCAAGGCTTCAAGACCTGCGGGTCTAGTTGGTCATTCAGCTCCCTTGGTGCCCAGACTTAAAATGCAATCTGCGACAAATAAACCAGTGGTGTCACCGAAAGCAGCTCCTCTGCCCAAACCTCCTCGGGTCCTTGCTCGTAGTTACTCTATACCTACAAGGGATCATACAGCGATGGAGTTCCATGTAACTGAACCACAGGAAGCTTCCCCCATTCCTGAAGTGCCAGACAATTCACCTCCTTTGACGCCAATAACCTTACCTAACACAGCGAAGCCACTGTCACCCAGCTCTGAGATTGTCACACTGGCTGTTCAATTCAGAGGCGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAR BAR_3

Protein Analysis

299

Amino Acids

32.19

Weight (kDa)

10.36

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33490 AT2G33490 AT2G33490
fragaria_vesca	FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_4g23100 FvH4_6g54020 FvH4_6g54020 FvH4_6g54020
malus_domestica	MD09G1006200.v1.1 MD13G1125400.v1.1 MD16G1126200.v1.1 MD17G1010200.v1.1
prunus_persica	Prupe.1G220000_v2.0.a1 Prupe.3G310800_v2.0.a1 Prupe.3G310800_v2.0.a1
pyrus_communis	pycom111g00450 pycom13g10930 pycom13g10940 pycom16g10730 pycom17g00470
rosa_chinensis	RchiOBHm_Chr2g0176201 RchiOBHm_Chr4g0429401
rosa_laevigata	RLG00000007073 RLG00000022389
rosa_multiflora	Rmu_sc0000363.1_g000044 Rmu_sc0003708.1_g000020 Rmu_sc0009677.1_g000013 Rmu_sc0009677.1_g000014
rosa_roxburghii	Rroxscaffold_2G00076680 Rroxscaffold_5G00371040
rosa_rugosa	Rorug02G0591700 Rorug04G0235800 Rorug04G0235800
rosa_samantha	Rh2AG670300 Rh2BG681800 Rh2CG644600 Rh2DG695400 Rh4AG291500 Rh4BG297200 Rh4CG312800 Rh4DG294300
rosa_wichuraiana	Rw2G054980 Rw4G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	610
AciI	CCGC	2 cut(s)	581, 888
AclWI	GGATC	4 cut(s)	94, 308, 321, 732
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	3 cut(s)	48, 114, 234
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	573, 878
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	541, 602, 668, 767, 852
AluI	AGCT	5 cut(s)	541, 602, 668, 767, 852
Alw26I	GTCTC	2 cut(s)	160, 459
AlwI	GGATC	4 cut(s)	94, 308, 321, 732
Ama87I	CYCGRG	1 cut(s)	687
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
AspA2I	CCTAGG	1 cut(s)	545
AspS9I	GGNCC	4 cut(s)	365, 409, 431, 691
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	6 cut(s)	150, 407, 465, 648, 789, 837
AvaI	CYCGRG	1 cut(s)	687
AvaII	GGWCC	4 cut(s)	365, 409, 431, 691
AvrII	CCTAGG	1 cut(s)	545
BaeGI	GKGCMC	2 cut(s)	105, 615
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	2 cut(s)	420, 730
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	160, 459
BfaI	CTAG	2 cut(s)	546, 587
BfmI	CTRYAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	666
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	667
BmcAI	AGTACT	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	171, 450
Bme18I	GGWCC	4 cut(s)	365, 409, 431, 691
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	4 cut(s)	365, 409, 431, 691
BmiI	GGNNCC	4 cut(s)	208, 315, 612, 692
BmrFI	CCNGG	2 cut(s)	171, 450
BpuEI	CTTGAG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	809
BsaI	GGTCTC	2 cut(s)	160, 459
BsaJI	CCNNGG	8 cut(s)	170, 383, 405, 449, 545, 564, 606, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	6 cut(s)	74, 88, 98, 324, 647, 873
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	8 cut(s)	170, 383, 405, 449, 545, 564, 606, 686
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	375, 846
BseNI	ACTGG	6 cut(s)	74, 88, 98, 324, 647, 873
BseRI	GAGGAG	3 cut(s)	270, 660, 675
BseSI	GKGCMC	2 cut(s)	105, 615
BseXI	GCAGC	1 cut(s)	677
BseYI	CCCAGC	1 cut(s)	848
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	550
BshNI	GGYRCC	1 cut(s)	610
BshVI	ATCGAT	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	160, 459
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	151, 356
BsnI	GGCC	1 cut(s)	550
Bso31I	GGTCTC	2 cut(s)	160, 459
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	2 cut(s)	105, 615
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	86, 313, 724
BspACI	CCGC	2 cut(s)	581, 888
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	2 cut(s)	374, 847
BspDI	ATCGAT	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	4 cut(s)	208, 315, 612, 692
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	4 cut(s)	94, 308, 321, 732
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	2 cut(s)	160, 459
BsrGI	TGTACA	1 cut(s)	112
BsrI	ACTGG	6 cut(s)	74, 88, 98, 324, 647, 873
BssECI	CCNNGG	8 cut(s)	170, 383, 405, 449, 545, 564, 606, 686
BssMI	GATC	3 cut(s)	86, 313, 724
BssNI	GRCGYC	1 cut(s)	809
BssT1I	CCWWGG	4 cut(s)	383, 545, 564, 606
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	112, 843
BstACI	GRCGYC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	2 cut(s)	361, 855
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstKTI	GATC	3 cut(s)	89, 316, 727
BstMAI	GTCTC	2 cut(s)	160, 459
BstMBI	GATC	3 cut(s)	86, 313, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 566
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	169, 448
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	2 cut(s)	105, 615
BstV1I	GCAGC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	550
BsuTUI	ATCGAT	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	749
BtsIMutI	CAGTG	6 cut(s)	105, 108, 317, 654, 839, 866
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	4 cut(s)	365, 409, 431, 691
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	3 cut(s)	47, 113, 233
CviAII	CATG	2 cut(s)	536, 746
CviQI	GTAC	3 cut(s)	47, 113, 233
DdeI	CTNAG	2 cut(s)	361, 855
DpnI	GATC	3 cut(s)	88, 315, 726
DpnII	GATC	3 cut(s)	86, 313, 724
DraI	TTTAAA	1 cut(s)	337
DrdI	GACNNNNNNGTC	1 cut(s)	582
DseDI	GACNNNNNNGTC	1 cut(s)	582
Eco130I	CCWWGG	4 cut(s)	383, 545, 564, 606
Eco31I	GGTCTC	2 cut(s)	160, 459
Eco47I	GGWCC	4 cut(s)	365, 409, 431, 691
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	687
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	4 cut(s)	383, 545, 564, 606
ErhI	CCWWGG	4 cut(s)	383, 545, 564, 606
FaeI	CATG	2 cut(s)	539, 749
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	535, 745
FauI	CCCGC	1 cut(s)	574
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	666
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	2 cut(s)	546, 587
GluI	GCNGC	1 cut(s)	666
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	2 cut(s)	539, 749
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	2 cut(s)	70, 175
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	6 cut(s)	150, 407, 465, 648, 789, 837
Hpy166II	GTNNAC	2 cut(s)	468, 530
Hpy188I	TCNGA	3 cut(s)	409, 856, 884
Hpy188III	TCNNGA	4 cut(s)	429, 536, 573, 779
Hpy8I	GTNNAC	2 cut(s)	468, 530
HpyCH4III	ACNGT	2 cut(s)	112, 843
HpyCH4V	TGCA	3 cut(s)	226, 260, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 566
HpyF3I	CTNAG	2 cut(s)	361, 855
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	2 cut(s)	539, 749
Kzo9I	GATC	3 cut(s)	86, 313, 724
LmnI	GCTCC	2 cut(s)	607, 673
Lsp1109I	GCAGC	1 cut(s)	677
MaeI	CTAG	2 cut(s)	546, 587
MaeIII	GTNAC	6 cut(s)	156, 654, 704, 748, 843, 862
MalI	GATC	3 cut(s)	88, 315, 726
MboI	GATC	3 cut(s)	86, 313, 724
MboII	GAAGA	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	105, 615
MluCI	AATT	6 cut(s)	60, 142, 198, 211, 793, 878
MlyI	GAGTC	1 cut(s)	79
MseI	TTAA	3 cut(s)	125, 336, 621
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	171, 450
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	2 cut(s)	151, 356
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	547, 566
NciI	CCSGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	3 cut(s)	86, 313, 724
NlaIII	CATG	2 cut(s)	539, 749
NlaIV	GGNNCC	4 cut(s)	208, 315, 612, 692
NmuCI	GTSAC	4 cut(s)	156, 654, 843, 862
PagI	TCATGA	1 cut(s)	535
PctI	GAATGC	2 cut(s)	151, 356
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PpuMI	RGGWCCY	1 cut(s)	691
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	4 cut(s)	208, 315, 612, 692
PspPI	GGNCC	4 cut(s)	365, 409, 431, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	48, 114, 234
RsaNI	GTAC	3 cut(s)	47, 113, 233
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	125, 336, 621
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	86, 313, 724
Sau96I	GGNCC	4 cut(s)	365, 409, 431, 691
ScaI	AGTACT	1 cut(s)	234
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	171, 450
SduI	GDGCHC	2 cut(s)	105, 615
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	4 cut(s)	365, 409, 431, 691
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	6 cut(s)	60, 142, 198, 211, 793, 878
SsiI	CCGC	2 cut(s)	581, 888
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	546, 587
StyD4I	CCNGG	2 cut(s)	169, 448
StyI	CCWWGG	4 cut(s)	383, 545, 564, 606
TaaI	ACNGT	2 cut(s)	112, 843
TaqI	TCGA	1 cut(s)	268
TasI	AATT	6 cut(s)	60, 142, 198, 211, 793, 878
TatI	WGTACW	3 cut(s)	46, 112, 232
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	125, 336, 621
Tru9I	TTAA	3 cut(s)	125, 336, 621
TscAI	CASTG	6 cut(s)	105, 115, 324, 654, 846, 873
TseFI	GTSAC	4 cut(s)	156, 654, 843, 862
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	4 cut(s)	156, 654, 843, 862
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	6 cut(s)	105, 115, 324, 654, 846, 873
VpaK11BI	GGWCC	4 cut(s)	365, 409, 431, 691
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	1 cut(s)	142
XmaJI	CCTAGG	1 cut(s)	545
XspI	CTAG	2 cut(s)	546, 587
ZrmI	AGTACT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.