Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Forward (+)

13303230 .. 13306478

Gene Structure 3249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGTGAAGAGATAACTAAAGGACTTCTGGATAAGTATGGCCCTGACAGGGTTCTCGATACCCCAATCACAGAGGCTGGATTTACTGGAATTGGAGTTGGTGCTGCTTACTATGGTCTGAAACCTGTTGTAGAGTTCATGACCTTCAACTTCTCAATGCAGGCAATTGACCATATCATCAATTCTGCTGCAAAATCAAATTATATGTCTGCTGGTCAAATAAATGTGCCCATTGTTTTCAGAGGTCCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAGTGTTATGCATCATGGTATGCTGCCGTCCCTGGGTTGAAGGTTTTGGCCCCTTATTCATCTGAAGATGCTCGTGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCCTGTTGTTTTTCTTGAAAATGAGTTGCTATATGGTGAATCATTTCCTGTTTCTGCCGAAGTTTTTGATTCCAGTTTTTGCCTTCCAATAGGAAAAGCTAAGATCGAGAGAGAAGGAAAGGATATCACCATTACAGCTTTCTCAAAAATGGTTGGCTATGCTCTACAGGCCGCTGAGATTCTTGTGAAGGAGGGAATTAATGCTGAGGTCATAAACTTGCGGTCAATTCGTCCTCTGGACAGGGCCACCATCAACACTTCAGTCAGGAAAACCAACAGACTTATAACAGTTGAAGAAGGATTTCCTCAGCATGGTGTTGGTGCTGAAATCTGTGCATCCGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCACCTGTTGAGAGGGTTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGAGATTGGCTGTTCCTCAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCGTGCTACAGAGCTGTGCCATTGGCTGCAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

303

Amino Acids

32.37

Weight (kDa)

5.17

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	6 - 142	3.8e-33	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	162 - 284	9.9e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	677
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	2 cut(s)	564, 613
AclWI	GGATC	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	369, 636
AfiI	CCNNNNNNNGG	3 cut(s)	49, 318, 704
AgsI	TTSAA	5 cut(s)	148, 325, 410, 686, 845
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	374, 491, 530, 747, 884
AluI	AGCT	5 cut(s)	374, 491, 530, 747, 884
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	4 cut(s)	40, 333, 561, 636
ApeKI	GCWGC	9 cut(s)	104, 188, 257, 260, 308, 374, 809, 860, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	435, 693
AspS9I	GGNCC	5 cut(s)	41, 245, 334, 385, 636
AsuHPI	GGTGA	3 cut(s)	17, 440, 511
AvaII	GGWCC	2 cut(s)	245, 385
BaeGI	GKGCMC	2 cut(s)	231, 277
BanI	GGYRCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	597, 699
BbvI	GCAGC	9 cut(s)	91, 175, 244, 247, 295, 361, 821, 847, 883
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	318
BfmI	CTRYAG	2 cut(s)	557, 877
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	2 cut(s)	245, 385
BmgT120I	GGNCC	5 cut(s)	41, 245, 334, 385, 636
BmiI	GGNNCC	4 cut(s)	274, 336, 386, 387
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	305, 343, 737, 751
Bpu10I	CCTNAGC	2 cut(s)	597, 699
BsaJI	CCNNGG	2 cut(s)	316, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 318, 704
Bse1I	ACTGG	2 cut(s)	91, 465
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	316, 317
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	3 cut(s)	49, 318, 704
BseMII	CTCAG	5 cut(s)	299, 558, 588, 713, 851
BseNI	ACTGG	2 cut(s)	91, 465
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	2 cut(s)	231, 277
BseXI	GCAGC	9 cut(s)	91, 175, 244, 247, 295, 361, 821, 847, 883
BseYI	CCCAGC	2 cut(s)	276, 782
BshFI	GGCC	4 cut(s)	42, 335, 563, 638
BshNI	GGYRCC	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	299, 398
BslI	CCNNNNNNNGG	3 cut(s)	49, 318, 704
BsmFI	GGGAC	2 cut(s)	299, 398
BsnI	GGCC	4 cut(s)	42, 335, 563, 638
Bsp1286I	GDGCHC	2 cut(s)	231, 277
Bsp143I	GATC	2 cut(s)	391, 495
BspACI	CCGC	2 cut(s)	564, 613
BspANI	GGCC	4 cut(s)	42, 335, 563, 638
BspCNI	CTCAG	5 cut(s)	298, 559, 589, 712, 850
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	274, 336, 386, 387
BspPI	GGATC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	91, 465
BssECI	CCNNGG	2 cut(s)	316, 317
BssMI	GATC	2 cut(s)	391, 495
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	254, 682
Bst6I	CTCTTC	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	162, 874
BstDEI	CTNAG	6 cut(s)	285, 492, 567, 597, 699, 837
BstF5I	GGATG	1 cut(s)	728
BstKTI	GATC	2 cut(s)	394, 498
BstMBI	GATC	2 cut(s)	391, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 869, 902
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	557, 877
BstSLI	GKGCMC	2 cut(s)	231, 277
BstV1I	GCAGC	9 cut(s)	91, 175, 244, 247, 295, 361, 821, 847, 883
BsuRI	GGCC	4 cut(s)	42, 335, 563, 638
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	162, 874
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	5 cut(s)	41, 245, 334, 385, 636
CviAII	CATG	4 cut(s)	139, 300, 704, 799
DdeI	CTNAG	6 cut(s)	285, 492, 567, 597, 699, 837
DpnI	GATC	2 cut(s)	393, 497
DpnII	GATC	2 cut(s)	391, 495
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	245, 385
Eco57I	CTGAAG	2 cut(s)	369, 636
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	298
FaeI	CATG	4 cut(s)	142, 303, 707, 802
FaqI	GGGAC	2 cut(s)	299, 398
FatI	CATG	4 cut(s)	138, 299, 703, 798
FokI	GGATG	1 cut(s)	715
GsaI	CCCAGC	2 cut(s)	280, 786
HaeIII	GGCC	4 cut(s)	42, 335, 563, 638
Hin1II	CATG	4 cut(s)	142, 303, 707, 802
HinfI	GANTC	3 cut(s)	431, 461, 571
HphI	GGTGA	3 cut(s)	17, 440, 511
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	4 cut(s)	120, 242, 349, 840
Hpy188III	TCNNGA	8 cut(s)	29, 56, 139, 407, 499, 629, 658, 758
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	6 cut(s)	154, 319, 485, 500, 574, 683
HpyCH4III	ACNGT	2 cut(s)	254, 682
HpyCH4V	TGCA	8 cut(s)	160, 191, 296, 728, 764, 809, 863, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 869, 902
HpyF3I	CTNAG	6 cut(s)	285, 492, 567, 597, 699, 837
Hsp92II	CATG	4 cut(s)	142, 303, 707, 802
KflI	GGGWCCC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	391, 495
Lsp1109I	GCAGC	9 cut(s)	91, 175, 244, 247, 295, 361, 821, 847, 883
LweI	GCATC	4 cut(s)	305, 343, 737, 751
MalI	GATC	2 cut(s)	393, 497
MboI	GATC	2 cut(s)	391, 495
MboII	GAAGA	4 cut(s)	20, 362, 698, 857
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	231, 277
MluCI	AATT	7 cut(s)	90, 165, 181, 199, 588, 618, 814
MnlI	CCTC	9 cut(s)	67, 236, 577, 592, 636, 708, 733, 768, 846
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	2 cut(s)	435, 693
MseI	TTAA	2 cut(s)	591, 907
MspA1I	CMGCKG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	560, 869, 902
NdeII	GATC	2 cut(s)	391, 495
NlaIII	CATG	4 cut(s)	142, 303, 707, 802
NlaIV	GGNNCC	4 cut(s)	274, 336, 386, 387
NsiI	ATGCAT	1 cut(s)	298
PagI	TCATGA	1 cut(s)	138
PasI	CCCWGGG	1 cut(s)	317
PdmI	GAANNNNTTC	2 cut(s)	435, 693
PfeI	GAWTC	3 cut(s)	431, 461, 571
PpuMI	RGGWCCY	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	2 cut(s)	276, 782
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	4 cut(s)	274, 336, 386, 387
PspPI	GGNCC	5 cut(s)	41, 245, 334, 385, 636
PspPPI	RGGWCCY	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	591, 907
Sau3AI	GATC	2 cut(s)	391, 495
Sau96I	GGNCC	5 cut(s)	41, 245, 334, 385, 636
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	231, 277
SfaNI	GCATC	4 cut(s)	305, 343, 737, 751
SfcI	CTRYAG	2 cut(s)	557, 877
SinI	GGWCC	2 cut(s)	245, 385
Sse9I	AATT	7 cut(s)	90, 165, 181, 199, 588, 618, 814
SsiI	CCGC	2 cut(s)	564, 613
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	254, 682
TaqI	TCGA	2 cut(s)	57, 498
TasI	AATT	7 cut(s)	90, 165, 181, 199, 588, 618, 814
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	431, 461, 571
Tru1I	TTAA	2 cut(s)	591, 907
Tru9I	TTAA	2 cut(s)	591, 907
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	9 cut(s)	104, 188, 257, 260, 308, 374, 809, 860, 896
TspDTI	ATGAA	2 cut(s)	127, 333
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	245, 385
VspI	ATTAAT	1 cut(s)	591
XmnI	GAANNNNTTC	2 cut(s)	435, 693
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.