Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Forward (+)

9282842 .. 9287628

Gene Structure 4787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1125300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTTGGGGATTTTAAGGCAGAAAGTGGGAGCTGGAAGCTCGTCAGCTATGATTTTGGGGCAGAGGATCCGCCCCGCCGCTTCGGCATTGAGGGGTTTCGCATCTTCTGCGAAAGAGATGACAGTGAGGGATGCTCTGAACTCTGCGCTCGATGAGGAAATGTCCGCGGACCCAAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAATATCAAGGTGCTTACAAGATAACGAAAGGACTTCTGGACAAGTATGGTCCTGACAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTTTGAGACCTGTTATAGAGTTCATGACCTTTAACTTCTCAATGCAGGCAATTGACCACATCATCAATTCCGCTGCAAAATCAAATTATATGTCTGCTGGCCAAATAAATGTGCCCATTGTTTTCAGAGGACCAAATGGTGCGGCTGCTGGGGTTGGTGCCCAGCATTCTCAATGTTATGCAGCATGGTATGCAGCCTGCCCTGGGTTGAAAGTTTTGACTCCTTATTCATCTGAAGATGCTCGTGGACTCTTAAAAGCTGCCATTAGGGACCCTGATCCTGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCATTTCCTGTTTCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTCCCAATTGGAAAAGCTAAGATTGAGAGAGAAGGAAAGGATGTCACTATTACAGCTTTTTCGAAAATGGTTGGCTATTCTCTACAGGCTGCTGAGATACTCGCTAAGGAAGGAATCAGTGCTGAGGTCATAAATTTGAGGTCAATTCGTCCTCTCGATAGGAAAACCATCAATGATTCAGTCAGGAAAACCAACAGACTGGTGACGGTTGAAGAAGGGTTTCCTCAGCATGGTGTCGGCGCTGAAATCTGCGCATCTGTTGTTGAGGATAGCTTTGGTTATCTTGATGCACCGGTTGAGAGAATTTCTGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGCGATTGGCTGTTCCTCAGGTCGAAGATATTGTGCGTGCAGCAAAGAGAGCGTGCTACAAATCTTCCTCATTGGCTGCAAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

374

Amino Acids

39.85

Weight (kDa)

5.49

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	39 - 213	2.8e-44	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	233 - 355	2.1e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	940
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	1 cut(s)	167
AciI	CCGC	7 cut(s)	70, 75, 78, 165, 167, 399, 470
AclWI	GGATC	3 cut(s)	61, 74, 599
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	2 cut(s)	820, 990
AcuI	CTGAAG	2 cut(s)	582, 684
AfiI	CCNNNNNNNGG	2 cut(s)	531, 917
AgeI	ACCGGT	1 cut(s)	979
AgsI	TTSAA	3 cut(s)	538, 623, 899
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	32, 39, 47, 587, 662, 704, 743, 960
AluI	AGCT	8 cut(s)	32, 39, 47, 587, 662, 704, 743, 960
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	3 cut(s)	61, 74, 599
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	820, 990
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AsiGI	ACCGGT	1 cut(s)	979
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	3 cut(s)	148, 929, 941
AspS9I	GGNCC	4 cut(s)	169, 254, 458, 598
AsuHPI	GGTGA	3 cut(s)	203, 653, 901
AsuII	TTCGAA	1 cut(s)	749
AvaII	GGWCC	4 cut(s)	169, 254, 458, 598
AxyI	CCTNAGG	1 cut(s)	1050
BaeGI	GKGCMC	2 cut(s)	444, 490
BalI	TGGCCA	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	570
BbvCI	CCTCAGC	2 cut(s)	810, 912
BccI	CCATC	2 cut(s)	181, 863
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	328
BfmI	CTRYAG	1 cut(s)	770
BfoI	RGCGCY	1 cut(s)	930
BglI	GCCNNNNNGGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	4 cut(s)	169, 254, 458, 598
BmgT120I	GGNCC	4 cut(s)	169, 254, 458, 598
BmiI	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	5 cut(s)	110, 121, 556, 950, 964
BmuI	ACTGGG	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
Bpu10I	CCTNAGC	3 cut(s)	792, 810, 912
Bpu14I	TTCGAA	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	165, 529, 530
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	2 cut(s)	531, 917
Bse118I	RCCGGY	1 cut(s)	979
Bse1I	ACTGG	3 cut(s)	304, 678, 891
Bse21I	CCTNAGG	1 cut(s)	1050
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	165, 529, 530
BseGI	GGATG	2 cut(s)	136, 733
BseLI	CCNNNNNNNGG	2 cut(s)	531, 917
BseMII	CTCAG	4 cut(s)	771, 801, 926, 1064
BseNI	ACTGG	3 cut(s)	304, 678, 891
BseSI	GKGCMC	2 cut(s)	444, 490
BseYI	CCCAGC	3 cut(s)	290, 476, 489
BsgI	GTGCAG	1 cut(s)	1092
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	429
BshNI	GGYRCC	1 cut(s)	485
BshTI	ACCGGT	1 cut(s)	979
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	531, 917
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	444, 490
Bsp143I	GATC	2 cut(s)	66, 604
BspACI	CCGC	7 cut(s)	70, 75, 78, 165, 167, 399, 470
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	4 cut(s)	772, 802, 925, 1063
BspFNI	CGCG	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
BspPI	GGATC	3 cut(s)	61, 74, 599
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	979
BsrI	ACTGG	3 cut(s)	304, 678, 891
BssAI	RCCGGY	1 cut(s)	979
BssECI	CCNNGG	3 cut(s)	165, 529, 530
BssMI	GATC	2 cut(s)	66, 604
BssSI	CACGAG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	124, 895
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	2 cut(s)	107, 518
BstBI	TTCGAA	1 cut(s)	749
BstC8I	GCNNGC	5 cut(s)	375, 427, 526, 1071, 1087
BstDEI	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	136, 733
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	3 cut(s)	148, 929, 941
BstKTI	GATC	2 cut(s)	69, 607
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	66, 604
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	770
BstSLI	GKGCMC	2 cut(s)	444, 490
BstUI	CGCG	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	1050
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	136, 733
BtsIMutI	CAGTG	2 cut(s)	129, 811
Cac8I	GCNNGC	5 cut(s)	375, 427, 526, 1071, 1087
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	3 cut(s)	148, 929, 941
Cfr10I	RCCGGY	1 cut(s)	979
Cfr13I	GGNCC	4 cut(s)	169, 254, 458, 598
Cfr42I	CCGCGG	1 cut(s)	168
CspAI	ACCGGT	1 cut(s)	979
CviAII	CATG	4 cut(s)	352, 513, 917, 1012
DdeI	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
DpnI	GATC	2 cut(s)	68, 606
DpnII	GATC	2 cut(s)	66, 604
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	4 cut(s)	169, 254, 458, 598
Eco57I	CTGAAG	2 cut(s)	582, 684
Eco81I	CCTNAGG	1 cut(s)	1050
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	4 cut(s)	355, 516, 920, 1015
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	4 cut(s)	351, 512, 916, 1011
FauI	CCCGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	143, 740
FspI	TGCGCA	1 cut(s)	940
GlaI	GCGC	3 cut(s)	147, 928, 940
GsaI	CCCAGC	3 cut(s)	294, 480, 493
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	1 cut(s)	980
HhaI	GCGC	3 cut(s)	148, 929, 941
Hin1II	CATG	4 cut(s)	355, 516, 920, 1015
Hin6I	GCGC	3 cut(s)	146, 927, 939
HinP1I	GCGC	3 cut(s)	146, 927, 939
HinfI	GANTC	6 cut(s)	547, 576, 644, 674, 801, 863
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	3 cut(s)	203, 653, 901
Hpy166II	GTNNAC	2 cut(s)	297, 575
Hpy188I	TCNGA	3 cut(s)	138, 455, 562
Hpy188III	TCNNGA	8 cut(s)	242, 257, 269, 352, 671, 842, 871, 971
Hpy8I	GTNNAC	2 cut(s)	297, 575
HpyAV	CCTTC	3 cut(s)	713, 791, 896
HpyCH4III	ACNGT	2 cut(s)	124, 895
HpyCH4V	TGCA	8 cut(s)	373, 404, 509, 521, 977, 1022, 1073, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
HpyF3I	CTNAG	6 cut(s)	705, 780, 792, 810, 912, 1050
Hsp92II	CATG	4 cut(s)	355, 516, 920, 1015
HspAI	GCGC	3 cut(s)	146, 927, 939
KflI	GGGWCCC	1 cut(s)	598
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	66, 604
LmnI	GCTCC	2 cut(s)	29, 1033
LweI	GCATC	5 cut(s)	110, 121, 556, 950, 964
MaeIII	GTNAC	2 cut(s)	730, 889
MalI	GATC	2 cut(s)	68, 606
MboI	GATC	2 cut(s)	66, 604
MboII	GAAGA	6 cut(s)	96, 206, 575, 911, 1070, 1089
MfeI	CAATTG	2 cut(s)	378, 693
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	444, 490
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	8 cut(s)	378, 394, 412, 693, 820, 831, 990, 1027
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	3 cut(s)	541, 570, 653
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	4 cut(s)	14, 360, 581, 1120
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	3 cut(s)	167, 401, 662
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	2 cut(s)	378, 693
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	83, 107, 518, 1082, 1115
NdeII	GATC	2 cut(s)	66, 604
NlaIII	CATG	4 cut(s)	355, 516, 920, 1015
NlaIV	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
NmuCI	GTSAC	2 cut(s)	730, 889
NsbI	TGCGCA	1 cut(s)	940
NspV	TTCGAA	1 cut(s)	749
PagI	TCATGA	1 cut(s)	351
PasI	CCCWGGG	1 cut(s)	530
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	674, 801, 863
PinAI	ACCGGT	1 cut(s)	979
PleI	GAGTC	3 cut(s)	541, 570, 652
PpsI	GAGTC	3 cut(s)	541, 570, 652
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	3 cut(s)	290, 476, 489
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	68, 171, 487, 599, 600
PspPI	GGNCC	4 cut(s)	169, 254, 458, 598
PspPPI	RGGWCCY	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	662
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	14, 360, 581, 1120
Sau3AI	GATC	2 cut(s)	66, 604
Sau96I	GGNCC	4 cut(s)	169, 254, 458, 598
SchI	GAGTC	3 cut(s)	541, 570, 653
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	444, 490
SfaNI	GCATC	5 cut(s)	110, 121, 556, 950, 964
SfcI	CTRYAG	1 cut(s)	770
Sfr303I	CCGCGG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	749
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	4 cut(s)	169, 254, 458, 598
Sse9I	AATT	8 cut(s)	378, 394, 412, 693, 820, 831, 990, 1027
SsiI	CCGC	7 cut(s)	70, 75, 78, 165, 167, 399, 470
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	124, 895
TaqI	TCGA	4 cut(s)	150, 749, 843, 1056
TasI	AATT	8 cut(s)	378, 394, 412, 693, 820, 831, 990, 1027
TauI	GCSGC	2 cut(s)	80, 473
TfiI	GAWTC	3 cut(s)	674, 801, 863
Tru1I	TTAA	4 cut(s)	14, 360, 581, 1120
Tru9I	TTAA	4 cut(s)	14, 360, 581, 1120
TscAI	CASTG	2 cut(s)	129, 811
TseFI	GTSAC	2 cut(s)	730, 889
Tsp45I	GTSAC	2 cut(s)	730, 889
TspDTI	ATGAA	2 cut(s)	340, 546
TspRI	CASTG	2 cut(s)	129, 811
VpaK11BI	GGWCC	4 cut(s)	169, 254, 458, 598
XapI	RAATTY	2 cut(s)	820, 990
XmnI	GAANNNNTTC	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.