Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Reverse (-)

51275472 .. 51279235

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTGGGGATTATACGGCAAAAACTGGGAGCTGGAAGCCCATCTGCTACGATGCTGGGGCAGTTGCAGAGGATCCGCCCCGCCGCGTCGGCATTGAGAAGTTTCTCATCTTCTGCAAAAGAGATGACAGTGAGGGATGCTCTAAACTCTGCCCTTGATGAGGAAATGTCCGCCGATCCGAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAGTATCAAGGTGCTTACAAGATAACTAAAGGACTTCTGGATAAGTATGGCCCTGAGAGGGTTCTCGATACCCCAATCACAGAGGCTGGATTTACTGGAATTGGAGTTGGTGCTGCATACTATGGTCTGAAACCTGTTGTAGAGTTCATGACCTTCAACTTCTCAATGCAGGCAATTGACCATATCATCAATTCTGCTGCAAAATCAAATTATATGTCTGCTGGTCAAATAAATGTGCCCATTGTTTTCAGAGGTCCAAATGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAGTGTTATGCAGCATGGTTTGCTGCAGTCCCTGGGTTGAAAGTTTTGGCCCCTTATTCATCTGAAGATGCTCGTGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCCTGTTGTTTTTCTTGAAAATGAGTTGCTATATGGTGAATCATTTCCTGTTTCTGCCGAAGTTTTCGATTCCAGTTTTTGCCTTCCAATAGGAAAAGCTAAGATCGAGAGAGAAGGAAAGGATATCACCATTACAGCTTTCTCAAAAATGGTTGGCTATGCTCTACAGGCTGCTGAGATTCTTGCTAAGGAGGGAATTAATGCTGAGGTCATAAACTTGCGGTCAATTCGTCCTCTGGACAGGGCCACCATCAACACTTCAGTCAGGAAAACCAACAGACTTTTAACAGTTGAAGAAGGATTTCCTCAGCATGGTGTTGGTGCTGAAATCTGTGCATCCGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCGCCTGTTGAGAGGGTTGCTGGGGCTGACGTTCCCATGCCTTATGCAGCCAATTTGGAGAGATTGGCTGTTCCTCAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCGTGCTACAGAGCTGTGCCATTGGCTGCAAGTGCTAAATTTACCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

379

Amino Acids

40.58

Weight (kDa)

5.65

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	41 - 215	3.1e-44	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	235 - 357	5e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccII	CGCG	1 cut(s)	86
AciI	CCGC	5 cut(s)	76, 81, 84, 171, 832
AclWI	GGATC	4 cut(s)	67, 80, 170, 605
AcsI	RAATTY	1 cut(s)	1127
AcuI	CTGAAG	2 cut(s)	588, 855
AfiI	CCNNNNNNNGG	3 cut(s)	160, 268, 923
AgsI	TTSAA	5 cut(s)	367, 544, 629, 905, 1064
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	6 cut(s)	32, 593, 710, 749, 966, 1103
AluI	AGCT	6 cut(s)	32, 593, 710, 749, 966, 1103
AlwI	GGATC	4 cut(s)	67, 80, 170, 605
AlwNI	CAGNNNCTG	2 cut(s)	296, 536
AoxI	GGCC	3 cut(s)	259, 552, 855
ApoI	RAATTY	1 cut(s)	1127
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	1 cut(s)	810
Asp700I	GAANNNNTTC	2 cut(s)	654, 912
AspLEI	GCGC	1 cut(s)	985
AspS9I	GGNCC	5 cut(s)	260, 464, 553, 604, 855
AsuHPI	GGTGA	3 cut(s)	209, 659, 730
AvaII	GGWCC	2 cut(s)	464, 604
BaeGI	GKGCMC	2 cut(s)	450, 496
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	491
BauI	CACGAG	1 cut(s)	576
BbvCI	CCTCAGC	2 cut(s)	816, 918
BccI	CCATC	3 cut(s)	49, 187, 869
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	537
BfmI	CTRYAG	3 cut(s)	528, 776, 1096
BglI	GCCNNNNNGGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	2 cut(s)	464, 604
BmgT120I	GGNCC	5 cut(s)	260, 464, 553, 604, 855
BmiI	GGNNCC	5 cut(s)	74, 493, 555, 605, 606
BmrFI	CCNGG	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	5 cut(s)	42, 127, 562, 956, 970
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu10I	CCTNAGC	3 cut(s)	798, 816, 918
BsaJI	CCNNGG	2 cut(s)	535, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 268, 923
Bse1I	ACTGG	3 cut(s)	30, 310, 684
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	535, 536
BseGI	GGATG	2 cut(s)	142, 947
BseLI	CCNNNNNNNGG	3 cut(s)	160, 268, 923
BseMII	CTCAG	6 cut(s)	255, 518, 777, 807, 932, 1070
BseNI	ACTGG	3 cut(s)	30, 310, 684
BseRI	GAGGAG	1 cut(s)	974
BseSI	GKGCMC	2 cut(s)	450, 496
BseYI	CCCAGC	3 cut(s)	55, 495, 1001
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	261, 554, 857
BshNI	GGYRCC	1 cut(s)	491
BslFI	GGGAC	2 cut(s)	518, 617
BslI	CCNNNNNNNGG	3 cut(s)	160, 268, 923
BsmFI	GGGAC	2 cut(s)	518, 617
BsnI	GGCC	3 cut(s)	261, 554, 857
Bsp1286I	GDGCHC	2 cut(s)	450, 496
Bsp143I	GATC	4 cut(s)	72, 175, 610, 714
BspACI	CCGC	5 cut(s)	76, 81, 84, 171, 832
BspANI	GGCC	3 cut(s)	261, 554, 857
BspCNI	CTCAG	6 cut(s)	256, 517, 778, 808, 931, 1069
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	5 cut(s)	74, 493, 555, 605, 606
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	4 cut(s)	67, 80, 170, 605
BspT107I	GGYRCC	1 cut(s)	491
BsrI	ACTGG	3 cut(s)	30, 310, 684
BssECI	CCNNGG	2 cut(s)	535, 536
BssMI	GATC	4 cut(s)	72, 175, 610, 714
BssSI	CACGAG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	130, 901
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	381, 1093
BstDEI	CTNAG	8 cut(s)	264, 504, 711, 786, 798, 816, 918, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	142, 947
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	4 cut(s)	75, 178, 613, 717
BstMBI	GATC	4 cut(s)	72, 175, 610, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 524, 779, 1088, 1121
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	3 cut(s)	528, 776, 1096
BstSLI	GKGCMC	2 cut(s)	450, 496
BstUI	CGCG	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	261, 554, 857
BtsCI	GGATG	2 cut(s)	142, 947
BtsIMutI	CAGTG	2 cut(s)	135, 512
Cac8I	GCNNGC	2 cut(s)	381, 1093
CaiI	CAGNNNCTG	2 cut(s)	296, 536
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	985
Cfr13I	GGNCC	5 cut(s)	260, 464, 553, 604, 855
CseI	GACGC	1 cut(s)	75
CviAII	CATG	4 cut(s)	358, 519, 923, 1018
DdeI	CTNAG	8 cut(s)	264, 504, 711, 786, 798, 816, 918, 1056
DpnI	GATC	4 cut(s)	74, 177, 612, 716
DpnII	GATC	4 cut(s)	72, 175, 610, 714
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	2 cut(s)	65, 160
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	464, 604
Eco57I	CTGAAG	2 cut(s)	588, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	736
FaeI	CATG	4 cut(s)	361, 522, 926, 1021
FaqI	GGGAC	2 cut(s)	518, 617
FatI	CATG	4 cut(s)	357, 518, 922, 1017
FauI	CCCGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	149, 934
GlaI	GCGC	1 cut(s)	984
GsaI	CCCAGC	3 cut(s)	59, 499, 1005
HaeIII	GGCC	3 cut(s)	261, 554, 857
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	985
Hin1II	CATG	4 cut(s)	361, 522, 926, 1021
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HinfI	GANTC	3 cut(s)	650, 680, 790
HphI	GGTGA	3 cut(s)	209, 659, 730
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	5 cut(s)	180, 339, 461, 568, 1059
Hpy188III	TCNNGA	8 cut(s)	248, 275, 358, 626, 718, 848, 877, 977
Hpy8I	GTNNAC	1 cut(s)	581
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	373, 704, 719, 902
HpyCH4III	ACNGT	2 cut(s)	130, 901
HpyCH4IV	ACGT	1 cut(s)	1011
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 524, 779, 1088, 1121
HpyF3I	CTNAG	8 cut(s)	264, 504, 711, 786, 798, 816, 918, 1056
HpySE526I	ACGT	1 cut(s)	1011
Hsp92II	CATG	4 cut(s)	361, 522, 926, 1021
HspAI	GCGC	1 cut(s)	983
KflI	GGGWCCC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	72, 175, 610, 714
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	5 cut(s)	42, 127, 562, 956, 970
MaeII	ACGT	1 cut(s)	1011
MalI	GATC	4 cut(s)	74, 177, 612, 716
MboI	GATC	4 cut(s)	72, 175, 610, 714
MboII	GAAGA	5 cut(s)	102, 212, 581, 917, 1076
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	450, 496
MluCI	AATT	8 cut(s)	309, 384, 400, 418, 807, 837, 1033, 1127
MroXI	GAANNNNTTC	2 cut(s)	654, 912
MseI	TTAA	3 cut(s)	810, 896, 1138
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	89, 524, 779, 1088, 1121
NdeII	GATC	4 cut(s)	72, 175, 610, 714
NlaIII	CATG	4 cut(s)	361, 522, 926, 1021
NlaIV	GGNNCC	5 cut(s)	74, 493, 555, 605, 606
PagI	TCATGA	1 cut(s)	357
PasI	CCCWGGG	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	654, 912
PfeI	GAWTC	3 cut(s)	650, 680, 790
PpuMI	RGGWCCY	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	3 cut(s)	55, 495, 1001
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	5 cut(s)	74, 493, 555, 605, 606
PspPI	GGNCC	5 cut(s)	260, 464, 553, 604, 855
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	2 cut(s)	296, 536
PsuI	RGATCY	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	810, 896, 1138
Sau3AI	GATC	4 cut(s)	72, 175, 610, 714
Sau96I	GGNCC	5 cut(s)	260, 464, 553, 604, 855
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	2 cut(s)	450, 496
SfaNI	GCATC	5 cut(s)	42, 127, 562, 956, 970
SfcI	CTRYAG	3 cut(s)	528, 776, 1096
SinI	GGWCC	2 cut(s)	464, 604
Sse9I	AATT	8 cut(s)	309, 384, 400, 418, 807, 837, 1033, 1127
SsiI	CCGC	5 cut(s)	76, 81, 84, 171, 832
StyD4I	CCNGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	130, 901
TaiI	ACGT	1 cut(s)	1014
TaqI	TCGA	3 cut(s)	276, 678, 717
TasI	AATT	8 cut(s)	309, 384, 400, 418, 807, 837, 1033, 1127
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	650, 680, 790
Tru1I	TTAA	3 cut(s)	810, 896, 1138
Tru9I	TTAA	3 cut(s)	810, 896, 1138
TscAI	CASTG	2 cut(s)	135, 512
TspDTI	ATGAA	2 cut(s)	346, 552
TspGWI	ACGGA	1 cut(s)	940
TspRI	CASTG	2 cut(s)	135, 512
VpaK11BI	GGWCC	2 cut(s)	464, 604
VspI	ATTAAT	1 cut(s)	810
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	1127
XmnI	GAANNNNTTC	2 cut(s)	654, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.