Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014462

Physical Location & Seq

Genomic Coordinates Reverse (-)

25688732 .. 25693453

Gene Structure 4722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTGGGGATTTTAAGGCAAAAACTGGGAGCTGCGAGCTCTTCCGCTACGAGGATCCGCCCCGCCGTTTCGGCACTGAGAGGCTTCTCTTCTTCTGCGAAAGAGCAAATGACAGTGAGGGATGCTTTGAACTCTGCCCTCGATGAGGAAATGTCTGCCGATCCGAAAGTGTTTATTATGGGTGAAGAGGTCGGGGAGTATCAAGGTGCTTACAAGATAACCAAAGGACTTCTGGATAAGTATGGGCCTGACAGGGTTCTCGATACCCCAATCACAGAGGCTGGGTTTACTGGAATTGGAGTTGGTGCTGCCTACTATGGTCTGAAACCTGTTATAGAGTTCATGACCTTCAACTTCTCTATGCAGGCAATTGACCATATCATCAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGTCAAATAAATGTGCCAATTGTGTTCAGAGGTCCAAATGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAATGTTATGCAGCATGGTTTGGTGCCGTCCCTGGGTTGAAAGTTTTGGCCCCTTATTCATCTGAAGATGCTCGTGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCCCGTTGTTTTTCTTGAAAATGAGTTGCTATATGGTGAATCATTTCCTATTTCTGCTGAAGTACTTGATTCCAGTTTTTGCCTTCCAATAGGAAAAGCTAAGATCGAGAGAGAGGGAAAGGATATCACCATTACAGCTTTTTCAAAAATGGTCGGCTATGCTCTACAGGCTGCTGAGATTCTTGCTAAAGAAGGAATTAGTGCCGAGGTCATAAACTTGCGGTCAATTCGTCCTCTGGACAGGGCTACCATCAACGCTTCAGTTAGGAAAACCAACAGACTTTTAACAGTTGAAGAAGGATTTCCTCAGCATGGTGTTGGTGCTGAAATCTGTGCATCCGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCGCCTGTCGAGAGGATTGCAGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGAGATTGGCTGTTCCTCAGGTTGAAGATATTGTTCGAGCTGCAAAGAGAGCGTGCTACAGAGCTGTGCCATTGGCTGCAAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

371

Amino Acids

39.5

Weight (kDa)

5.49

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	42 - 216	1e-43	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	236 - 358	1.1e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50850
fragaria_vesca	FvH4_4g23110 FvH4_4g23110 FvH4_4g23110
malus_domestica	MD13G1125300.v1.1 MD16G1126100.v1.1
prunus_persica	Prupe.1G220200_v2.0.a1 Prupe.1G220200_v2.0.a1
pyrus_communis	pycom13g10920
rosa_chinensis	RchiOBHm_Chr4g0429431
rosa_laevigata	RLG00000007072
rosa_multiflora	Rmu_sc0016937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371050
rosa_rugosa	Rorug04G0235800 Rorug04G0235900
rosa_samantha	Rh4AG291600
rosa_wichuraiana	Rw4G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	476, 512
AciI	CCGC	4 cut(s)	45, 58, 63, 817
AclWI	GGATC	4 cut(s)	49, 62, 155, 590
AcuI	CTGAAG	3 cut(s)	573, 675, 840
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	4 cut(s)	51, 145, 522, 908
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	7 cut(s)	130, 352, 529, 614, 741, 890, 1049
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	8 cut(s)	32, 39, 578, 695, 734, 951, 1064, 1088
AluI	AGCT	8 cut(s)	32, 39, 578, 695, 734, 951, 1064, 1088
Alw21I	GWGCWC	1 cut(s)	41
AlwI	GGATC	4 cut(s)	49, 62, 155, 590
AlwNI	CAGNNNCTG	2 cut(s)	281, 992
AoxI	GGCC	2 cut(s)	245, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	2 cut(s)	639, 897
AspLEI	GCGC	1 cut(s)	970
AspS9I	GGNCC	4 cut(s)	245, 449, 538, 589
AsuHPI	GGTGA	3 cut(s)	194, 644, 715
AvaII	GGWCC	2 cut(s)	449, 589
AxyI	CCTNAGG	1 cut(s)	1041
BaeGI	GKGCMC	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	54
BanI	GGYRCC	2 cut(s)	476, 512
BanII	GRGCYC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	903
BccI	CCATC	1 cut(s)	854
BceAI	ACGGC	2 cut(s)	50, 500
BcgI	CGANNNNNNTGC	2 cut(s)	965, 999
BciT130I	CCWGG	1 cut(s)	522
BfmI	CTRYAG	2 cut(s)	761, 1081
BglI	GCCNNNNNGGC	1 cut(s)	71
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	449, 589
BmgT120I	GGNCC	4 cut(s)	245, 449, 538, 589
BmiI	GGNNCC	6 cut(s)	56, 478, 514, 540, 590, 591
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	4 cut(s)	112, 547, 941, 955
BmuI	ACTGGG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	903
BsaJI	CCNNGG	3 cut(s)	520, 521, 801
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 145, 522, 908
Bse1I	ACTGG	3 cut(s)	30, 295, 669
Bse21I	CCTNAGG	1 cut(s)	1041
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	520, 521, 801
BseGI	GGATG	2 cut(s)	127, 932
BseLI	CCNNNNNNNGG	4 cut(s)	51, 145, 522, 908
BseMII	CTCAG	4 cut(s)	68, 762, 917, 1055
BseNI	ACTGG	3 cut(s)	30, 295, 669
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	1 cut(s)	481
BseYI	CCCAGC	2 cut(s)	281, 480
BshFI	GGCC	2 cut(s)	247, 539
BshNI	GGYRCC	2 cut(s)	476, 512
BsiHKAI	GWGCWC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	503, 602
BslI	CCNNNNNNNGG	4 cut(s)	51, 145, 522, 908
BsmFI	GGGAC	2 cut(s)	503, 602
BsnI	GGCC	2 cut(s)	247, 539
Bsp1286I	GDGCHC	2 cut(s)	41, 481
Bsp143I	GATC	4 cut(s)	54, 160, 595, 699
BspACI	CCGC	4 cut(s)	45, 58, 63, 817
BspANI	GGCC	2 cut(s)	247, 539
BspCNI	CTCAG	4 cut(s)	69, 763, 916, 1054
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	6 cut(s)	56, 478, 514, 540, 590, 591
BspPI	GGATC	4 cut(s)	49, 62, 155, 590
BspQI	GCTCTTC	1 cut(s)	46
BspT107I	GGYRCC	2 cut(s)	476, 512
BsrI	ACTGG	3 cut(s)	30, 295, 669
BssECI	CCNNGG	3 cut(s)	520, 521, 801
BssMI	GATC	4 cut(s)	54, 160, 595, 699
BssSI	CACGAG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	115, 886
Bst6I	CTCTTC	3 cut(s)	46, 94, 180
BstC8I	GCNNGC	3 cut(s)	37, 366, 1078
BstDEI	CTNAG	6 cut(s)	77, 696, 771, 903, 1041, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	127, 932
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	4 cut(s)	57, 163, 598, 702
BstMBI	GATC	4 cut(s)	54, 160, 595, 699
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 764, 1073, 1106
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	761, 1081
BstSLI	GKGCMC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuRI	GGCC	2 cut(s)	247, 539
BtsCI	GGATG	2 cut(s)	127, 932
BtsIMutI	CAGTG	2 cut(s)	74, 120
Cac8I	GCNNGC	3 cut(s)	37, 366, 1078
CaiI	CAGNNNCTG	2 cut(s)	281, 992
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	970
Cfr13I	GGNCC	4 cut(s)	245, 449, 538, 589
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	5 cut(s)	343, 409, 504, 908, 1003
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	6 cut(s)	77, 696, 771, 903, 1041, 1110
DpnI	GATC	4 cut(s)	56, 162, 597, 701
DpnII	GATC	4 cut(s)	54, 160, 595, 699
Eam1104I	CTCTTC	3 cut(s)	46, 94, 180
EarI	CTCTTC	3 cut(s)	46, 94, 180
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	449, 589
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	3 cut(s)	573, 675, 840
Eco81I	CCTNAGG	1 cut(s)	1041
EcoICRI	GAGCTC	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	5 cut(s)	346, 412, 507, 911, 1006
FaqI	GGGAC	2 cut(s)	503, 602
FatI	CATG	5 cut(s)	342, 408, 503, 907, 1002
FauI	CCCGC	1 cut(s)	70
FokI	GGATG	2 cut(s)	134, 919
FriOI	GRGCYC	1 cut(s)	41
GlaI	GCGC	1 cut(s)	969
GsaI	CCCAGC	2 cut(s)	285, 484
HaeIII	GGCC	2 cut(s)	247, 539
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	5 cut(s)	346, 412, 507, 911, 1006
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HinfI	GANTC	3 cut(s)	635, 665, 775
HphI	GGTGA	3 cut(s)	194, 644, 715
Hpy166II	GTNNAC	2 cut(s)	288, 566
Hpy188I	TCNGA	4 cut(s)	165, 324, 446, 553
Hpy188III	TCNNGA	8 cut(s)	233, 260, 343, 611, 703, 833, 962, 976
Hpy8I	GTNNAC	2 cut(s)	288, 566
HpyAV	CCTTC	4 cut(s)	358, 689, 782, 887
HpyCH4III	ACNGT	2 cut(s)	115, 886
HpyCH4V	TGCA	8 cut(s)	364, 395, 500, 932, 986, 1013, 1067, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 764, 1073, 1106
HpyF3I	CTNAG	6 cut(s)	77, 696, 771, 903, 1041, 1110
Hsp92II	CATG	5 cut(s)	346, 412, 507, 911, 1006
HspAI	GCGC	1 cut(s)	968
KflI	GGGWCCC	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	54, 160, 595, 699
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	4 cut(s)	112, 547, 941, 955
MalI	GATC	4 cut(s)	56, 162, 597, 701
MboI	GATC	4 cut(s)	54, 160, 595, 699
MboII	GAAGA	7 cut(s)	33, 81, 84, 197, 566, 902, 1061
MfeI	CAATTG	2 cut(s)	369, 435
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	41, 481
MluCI	AATT	8 cut(s)	294, 369, 385, 403, 435, 792, 822, 1018
MroXI	GAANNNNTTC	2 cut(s)	639, 897
MseI	TTAA	2 cut(s)	14, 881
MspR9I	CCNGG	1 cut(s)	522
MunI	CAATTG	2 cut(s)	369, 435
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	4 cut(s)	71, 764, 1073, 1106
NdeII	GATC	4 cut(s)	54, 160, 595, 699
NlaIII	CATG	5 cut(s)	346, 412, 507, 911, 1006
NlaIV	GGNNCC	6 cut(s)	56, 478, 514, 540, 590, 591
NmeAIII	GCCGAG	1 cut(s)	826
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	1 cut(s)	342
PasI	CCCWGGG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	639, 897
PfeI	GAWTC	3 cut(s)	635, 665, 775
PpuMI	RGGWCCY	1 cut(s)	589
PscI	ACATGT	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	281, 480
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	6 cut(s)	56, 478, 514, 540, 590, 591
PspPI	GGNCC	4 cut(s)	245, 449, 538, 589
PspPPI	RGGWCCY	1 cut(s)	589
PstNI	CAGNNNCTG	2 cut(s)	281, 992
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	14, 881
Sau3AI	GATC	4 cut(s)	54, 160, 595, 699
Sau96I	GGNCC	4 cut(s)	245, 449, 538, 589
ScaI	AGTACT	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	2 cut(s)	41, 481
SfaNI	GCATC	4 cut(s)	112, 547, 941, 955
SfcI	CTRYAG	2 cut(s)	761, 1081
SinI	GGWCC	2 cut(s)	449, 589
Sse9I	AATT	8 cut(s)	294, 369, 385, 403, 435, 792, 822, 1018
SsiI	CCGC	4 cut(s)	45, 58, 63, 817
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	115, 886
TaqI	TCGA	5 cut(s)	141, 261, 702, 975, 1060
TasI	AATT	8 cut(s)	294, 369, 385, 403, 435, 792, 822, 1018
TatI	WGTACW	1 cut(s)	658
TfiI	GAWTC	3 cut(s)	635, 665, 775
Tru1I	TTAA	2 cut(s)	14, 881
Tru9I	TTAA	2 cut(s)	14, 881
TscAI	CASTG	2 cut(s)	81, 120
TspDTI	ATGAA	2 cut(s)	331, 537
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	2 cut(s)	81, 120
VpaK11BI	GGWCC	2 cut(s)	449, 589
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmnI	GAANNNNTTC	2 cut(s)	639, 897
ZrmI	AGTACT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.