Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Reverse (-)

20800473 .. 20801437

Gene Structure 965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTCATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTGCCTCCACCATCCACCACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCTACTACTGCACCGGTGGTTCAAGAGAATGATCAAAGGCATTACAGAGGCGTCAGGAGAAGACCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGGTTAGGCACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAACTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAAAGCATGAGGACTTGGGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGATGAAAGCCAGCTGATCAGCCGTAAAGCTGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGATGCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGACATGGGAATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGGACACTCTCAACTCGTAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

24.58

Weight (kDa)

9.26

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	71 - 122	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	638
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	194, 392
AluBI	AGCT	7 cut(s)	44, 323, 347, 371, 484, 500, 518
AluI	AGCT	7 cut(s)	44, 323, 347, 371, 484, 500, 518
Alw26I	GTCTC	3 cut(s)	258, 411, 451
ApeKI	GCWGC	2 cut(s)	323, 344
AsiGI	ACCGGT	1 cut(s)	184
Asp700I	GAANNNNTTC	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	475
BbsI	GAAGAC	2 cut(s)	238, 434
BbvI	GCAGC	2 cut(s)	310, 356
BccI	CCATC	3 cut(s)	116, 559, 640
BceAI	ACGGC	1 cut(s)	477
BclI	TGATCA	2 cut(s)	202, 486
BcoDI	GTCTC	3 cut(s)	258, 411, 451
BfmI	CTRYAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	3 cut(s)	252, 324, 345
BlsI	GCNGC	3 cut(s)	253, 325, 346
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	238, 434
Bpu10I	CCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	236, 315
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	638
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	236, 315
BseGI	GGATG	2 cut(s)	108, 478
BseLI	CCNNNNNNNGG	1 cut(s)	638
BseMII	CTCAG	2 cut(s)	246, 533
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	310, 356
BsgI	GTGCAG	2 cut(s)	103, 165
BshTI	ACCGGT	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	638
BsmAI	GTCTC	3 cut(s)	258, 411, 451
BsmFI	GGGAC	1 cut(s)	587
Bso31I	GGTCTC	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	49, 202, 258, 486
Bsp19I	CCATGG	2 cut(s)	236, 315
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	247, 532
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	236, 315
BssMI	GATC	4 cut(s)	49, 202, 258, 486
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	236, 315
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	449
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	4 cut(s)	88, 134, 255, 519
BstDSI	CCRYGG	2 cut(s)	236, 315
BstF5I	GGATG	2 cut(s)	108, 478
BstKTI	GATC	4 cut(s)	52, 205, 261, 489
BstMAI	GTCTC	3 cut(s)	258, 411, 451
BstMBI	GATC	4 cut(s)	49, 202, 258, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 320
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	310, 356
BstV2I	GAAGAC	2 cut(s)	238, 434
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	49
BtgI	CCRYGG	2 cut(s)	236, 315
BtsCI	GGATG	2 cut(s)	108, 478
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	184
CseI	GACGC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	4 cut(s)	237, 316, 404, 595
DdeI	CTNAG	4 cut(s)	88, 134, 255, 519
DpnI	GATC	4 cut(s)	51, 204, 260, 488
DpnII	GATC	4 cut(s)	49, 202, 258, 486
DraI	TTTAAA	2 cut(s)	352, 441
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	236, 315
Eco31I	GGTCTC	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	236, 315
ErhI	CCWWGG	2 cut(s)	236, 315
FaeI	CATG	4 cut(s)	240, 319, 407, 598
FaiI	YATR	8 cut(s)	56, 164, 238, 249, 317, 336, 405, 596
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	4 cut(s)	236, 315, 403, 594
FbaI	TGATCA	2 cut(s)	202, 486
Fnu4HI	GCNGC	3 cut(s)	252, 324, 345
FokI	GGATG	2 cut(s)	95, 485
Fsp4HI	GCNGC	3 cut(s)	252, 324, 345
GluI	GCNGC	3 cut(s)	252, 324, 345
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	240, 319, 407, 598
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	194, 226
HpyAV	CCTTC	3 cut(s)	77, 93, 556
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	3 cut(s)	120, 182, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 320
HpyF3I	CTNAG	4 cut(s)	88, 134, 255, 519
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	240, 319, 407, 598
Ksp22I	TGATCA	2 cut(s)	202, 486
Kzo9I	GATC	4 cut(s)	49, 202, 258, 486
LmnI	GCTCC	1 cut(s)	578
LpnPI	CCDG	9 cut(s)	50, 198, 211, 277, 381, 446, 494, 506, 512
Lsp1109I	GCAGC	2 cut(s)	310, 356
LweI	GCATC	1 cut(s)	523
MaeIII	GTNAC	2 cut(s)	463, 658
MalI	GATC	4 cut(s)	51, 204, 260, 488
MboI	GATC	4 cut(s)	49, 202, 258, 486
MboII	GAAGA	4 cut(s)	243, 439, 466, 524
MflI	RGATCY	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	6 cut(s)	351, 378, 440, 504, 545, 664
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	164, 320
NcoI	CCATGG	2 cut(s)	236, 315
NdeII	GATC	4 cut(s)	49, 202, 258, 486
NlaIII	CATG	4 cut(s)	240, 319, 407, 598
NmuCI	GTSAC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	604
PflMI	CCANNNNNTGG	1 cut(s)	638
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	253, 325, 346
PsuI	RGATCY	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	6 cut(s)	351, 378, 440, 504, 545, 664
SatI	GCNGC	3 cut(s)	252, 324, 345
Sau3AI	GATC	4 cut(s)	49, 202, 258, 486
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	162
SgrAI	CRCCGGYG	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	314
SsiI	CCGC	1 cut(s)	251
SspI	AATATT	1 cut(s)	603
StyI	CCWWGG	2 cut(s)	236, 315
TaaI	ACNGT	1 cut(s)	587
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	6 cut(s)	351, 378, 440, 504, 545, 664
Tru9I	TTAA	6 cut(s)	351, 378, 440, 504, 545, 664
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	323, 344
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	3 cut(s)	482, 591, 598
TspRI	CASTG	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.