Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Reverse (-)

62633588 .. 62634468

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAACAAGCTTCTGCCCTAGACATGATCAGCCAACACCTTCTCAGTGAGTTTAACTCCATGGAGAGCTTCATCACCAGCCTCAACAACTGCACCTCCAACATTGATCAAACCCCTCAATATCAACAAGCTGACGATTCCTTCAAAGTCTCTGATTACTTACTCCCTTCTGAACCCGAATTCGAGTTCGAAACCAAGCCTCAGATTCCGACCATCAACGTGGCAATACCAACAAGGCCGGCTCCAGCTGTGGCGCCTGCTGTTTCTGCGAGCGCCACAGCTGCTCAGAGTTCGATAAACTCTGAGAACGAGGCGAGGCACTACAGGGGCGTCCGTAGACGCCCCTGGGGCAAGTACGCTGCCGAAATTCGTGACCCTAACAAAAGGGGGTCACGGGTTTGGCTGGGGACCTTTGACACCGCCGTTGAAGCGGCCAAGGCTTATGATCTCGCGGCGTTTAAGTTGAGGGGGAGCAAAGCCATCCTCAACTTTCCTCTTGAAATTAACAGCAACATCGCGGCGGCTCAGCCTCTTCAGGCGAGCGTAGTTGGCCGGAAGAGGAGGAGGTCTGAGAGTGCAGAGGGTAACAGTGAGGGTGTGGAGAGTAATAAAGCGATGAAGAAGGAGGAGGAAACCATAAGCAGCGGCAACAGCGCCTCACCAATTAGATCATCCATTTCATCAGCAGCAGCAGTTAACTGTCCATTAACGCCGTCGAATTGGACGTCAATTTGGGATAGCAAAGATCTTGACGGAATTTTCAGTGTGCCTCCTTTGTCACCATTATCTCCTCACCCCTGTTTCGGATACAACCAGCTTTTAATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

30.07

Weight (kDa)

5.88

Isoelectric Point (pI)

64.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 158	7.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	337
AccII	CGCG	2 cut(s)	452, 518
AciI	CCGC	6 cut(s)	420, 431, 452, 518, 521, 645
AcoI	YGGCCR	2 cut(s)	432, 550
AcsI	RAATTY	3 cut(s)	179, 366, 756
AcuI	CTGAAG	1 cut(s)	518
AcyI	GRCGYC	4 cut(s)	254, 330, 340, 725
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	145, 428, 500
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	6 cut(s)	11, 69, 131, 248, 281, 817
AluI	AGCT	6 cut(s)	11, 69, 131, 248, 281, 817
Alw26I	GTCTC	1 cut(s)	154
AoxI	GGCC	3 cut(s)	236, 432, 550
ApeKI	GCWGC	5 cut(s)	281, 359, 642, 686, 689
ApoI	RAATTY	3 cut(s)	179, 366, 756
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
AspLEI	GCGC	3 cut(s)	256, 275, 656
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	4 cut(s)	67, 651, 771, 785
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	253
BbvI	GCAGC	5 cut(s)	268, 346, 654, 698, 701
BccI	CCATC	2 cut(s)	221, 488
BceAI	ACGGC	2 cut(s)	407, 697
BciT130I	CCWGG	1 cut(s)	346
BciVI	GTATCC	1 cut(s)	800
BclI	TGATCA	2 cut(s)	27, 106
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	3 cut(s)	257, 276, 657
BfuI	GTATCC	1 cut(s)	800
BglI	GCCNNNNNGGC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	745
BlpI	GCTNAGC	1 cut(s)	525
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	243, 255, 409
BmrFI	CCNGG	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	189
BsaHI	GRCGYC	4 cut(s)	254, 330, 340, 725
BsaJI	CCNNGG	4 cut(s)	60, 344, 345, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	803
Bse118I	RCCGGY	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	60, 344, 345, 435
BseGI	GGATG	2 cut(s)	480, 671
BseLI	CCNNNNNNNGG	1 cut(s)	803
BseMII	CTCAG	6 cut(s)	58, 215, 294, 299, 539, 561
BseRI	GAGGAG	4 cut(s)	574, 577, 641, 780
BseXI	GCAGC	5 cut(s)	268, 346, 654, 698, 701
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	2 cut(s)	76, 597
Bsh1236I	CGCG	2 cut(s)	452, 518
BshFI	GGCC	3 cut(s)	238, 434, 552
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	239, 553
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	803
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	238, 434, 552
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	27, 106, 445, 668, 745
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	6 cut(s)	420, 431, 452, 518, 521, 645
BspANI	GGCC	3 cut(s)	238, 434, 552
BspCNI	CTCAG	6 cut(s)	57, 214, 295, 298, 538, 562
BspFNI	CGCG	2 cut(s)	452, 518
BspLI	GGNNCC	3 cut(s)	243, 255, 409
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	60, 344, 345, 435
BssMI	GATC	5 cut(s)	27, 106, 445, 668, 745
BssNI	GRCGYC	4 cut(s)	254, 330, 340, 725
BssT1I	CCWWGG	2 cut(s)	60, 435
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	590, 701
Bst6I	CTCTTC	2 cut(s)	537, 551
BstACI	GRCGYC	4 cut(s)	254, 330, 340, 725
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	240, 258, 271, 541
BstDEI	CTNAG	6 cut(s)	44, 201, 285, 303, 525, 570
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	480, 671
BstFNI	CGCG	2 cut(s)	452, 518
BstH2I	RGCGCY	3 cut(s)	257, 276, 657
BstHHI	GCGC	3 cut(s)	256, 275, 656
BstKTI	GATC	5 cut(s)	30, 109, 448, 671, 748
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	27, 106, 445, 668, 745
BstMWI	GCNNNNNNNGC	7 cut(s)	266, 281, 348, 428, 437, 549, 651
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	2 cut(s)	452, 518
BstV1I	GCAGC	5 cut(s)	268, 346, 654, 698, 701
BstX2I	RGATCY	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	238, 434, 552
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	2 cut(s)	499, 629
BtsCI	GGATG	2 cut(s)	480, 671
BtsIMutI	CAGTG	3 cut(s)	52, 595, 769
Cac8I	GCNNGC	4 cut(s)	240, 258, 271, 541
CfoI	GCGC	3 cut(s)	256, 275, 656
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	2 cut(s)	319, 348
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	25, 61
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	6 cut(s)	44, 201, 285, 303, 525, 570
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	5 cut(s)	29, 108, 447, 670, 747
DpnII	GATC	5 cut(s)	27, 106, 445, 668, 745
EaeI	YGGCCR	2 cut(s)	432, 550
Eam1104I	CTCTTC	2 cut(s)	537, 551
EarI	CTCTTC	2 cut(s)	537, 551
Eco130I	CCWWGG	2 cut(s)	60, 435
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	60, 435
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	60, 435
FaeI	CATG	2 cut(s)	28, 64
FaiI	YATR	4 cut(s)	26, 62, 444, 638
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	2 cut(s)	24, 60
FbaI	TGATCA	2 cut(s)	27, 106
FblI	GTMKAC	1 cut(s)	337
FokI	GGATG	2 cut(s)	467, 658
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	3 cut(s)	255, 274, 655
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	3 cut(s)	257, 276, 657
HaeIII	GGCC	3 cut(s)	238, 434, 552
HapII	CCGG	2 cut(s)	239, 553
HgaI	GACGC	2 cut(s)	319, 348
HhaI	GCGC	3 cut(s)	256, 275, 656
Hin1I	GRCGYC	4 cut(s)	254, 330, 340, 725
Hin1II	CATG	2 cut(s)	28, 64
Hin6I	GCGC	3 cut(s)	254, 273, 654
HinP1I	GCGC	3 cut(s)	254, 273, 654
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	137, 205
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	2 cut(s)	239, 553
HphI	GGTGA	4 cut(s)	67, 651, 771, 785
Hpy166II	GTNNAC	2 cut(s)	338, 697
Hpy188I	TCNGA	8 cut(s)	154, 172, 204, 210, 288, 304, 571, 806
Hpy188III	TCNNGA	3 cut(s)	371, 497, 749
Hpy8I	GTNNAC	2 cut(s)	338, 697
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	50, 151, 177, 616
HpyCH4III	ACNGT	2 cut(s)	590, 701
HpyCH4IV	ACGT	2 cut(s)	219, 725
HpyCH4V	TGCA	2 cut(s)	93, 578
HpyF10VI	GCNNNNNNNGC	7 cut(s)	266, 281, 348, 428, 437, 549, 651
HpyF3I	CTNAG	6 cut(s)	44, 201, 285, 303, 525, 570
HpySE526I	ACGT	2 cut(s)	219, 725
Hsp92I	GRCGYC	4 cut(s)	254, 330, 340, 725
Hsp92II	CATG	2 cut(s)	28, 64
HspAI	GCGC	3 cut(s)	254, 273, 654
KasI	GGCGCC	1 cut(s)	253
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	27, 106
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	27, 106, 445, 668, 745
LmnI	GCTCC	2 cut(s)	247, 471
Lsp1109I	GCAGC	5 cut(s)	268, 346, 654, 698, 701
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	219, 725
MaeIII	GTNAC	4 cut(s)	371, 390, 584, 777
MalI	GATC	5 cut(s)	29, 108, 447, 670, 747
MboI	GATC	5 cut(s)	27, 106, 445, 668, 745
MboII	GAAGA	3 cut(s)	524, 568, 631
MflI	RGATCY	1 cut(s)	745
MluCI	AATT	8 cut(s)	179, 366, 501, 663, 718, 729, 756, 822
Mly113I	GGCGCC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	123, 233
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	6 cut(s)	54, 459, 504, 696, 707, 821
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	3 cut(s)	248, 281, 645
MspI	CCGG	2 cut(s)	239, 553
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	2 cut(s)	452, 518
MwoI	GCNNNNNNNGC	7 cut(s)	266, 281, 348, 428, 437, 549, 651
NaeI	GCCGGC	1 cut(s)	240
NarI	GGCGCC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	27, 106, 445, 668, 745
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	28, 64
NlaIV	GGNNCC	3 cut(s)	243, 255, 409
NmuCI	GTSAC	3 cut(s)	371, 390, 777
NspV	TTCGAA	1 cut(s)	189
PasI	CCCWGGG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	137, 205
PluTI	GGCGCC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	243, 255, 409
PspPI	GGNCC	1 cut(s)	408
PspPPI	RGGWCCY	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	248, 281
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	6 cut(s)	54, 459, 504, 696, 707, 821
Sau3AI	GATC	5 cut(s)	27, 106, 445, 668, 745
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	322
SfoI	GGCGCC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	8 cut(s)	179, 366, 501, 663, 718, 729, 756, 822
SsiI	CCGC	6 cut(s)	420, 431, 452, 518, 521, 645
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	60, 435
TaaI	ACNGT	2 cut(s)	590, 701
TaiI	ACGT	2 cut(s)	222, 728
TaqI	TCGA	4 cut(s)	183, 189, 293, 716
TasI	AATT	8 cut(s)	179, 366, 501, 663, 718, 729, 756, 822
TauI	GCSGC	5 cut(s)	434, 455, 521, 524, 648
TfiI	GAWTC	2 cut(s)	137, 205
Tru1I	TTAA	6 cut(s)	54, 459, 504, 696, 707, 821
Tru9I	TTAA	6 cut(s)	54, 459, 504, 696, 707, 821
TscAI	CASTG	3 cut(s)	52, 595, 769
TseFI	GTSAC	3 cut(s)	371, 390, 777
TseI	GCWGC	5 cut(s)	281, 359, 642, 686, 689
Tsp45I	GTSAC	3 cut(s)	371, 390, 777
TspDTI	ATGAA	4 cut(s)	61, 632, 669, 815
TspGWI	ACGGA	2 cut(s)	323, 768
TspRI	CASTG	3 cut(s)	52, 595, 769
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	3 cut(s)	179, 366, 756
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.