Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Forward (+)

31793773 .. 31794717

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1248600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCATCAGAAGCTTCAGCTCTGGAGCTGATTAGGCGACACCTTTTGAATGAATTTACCACAATGGATAGCTTCATCACTAGTCTCGACCTTTGCACCTCTGTCCCCCAACAAGATGAAATTGCCCAATCACCCTTTAACACAACTTCCTCCTCCTCCACCACCACCGCCACCACCAGCACCACCAACAGTGGTAGTGAGTCCACTGACCAATATTTCAAAATCTCTGATTACTTAGTCCCAGAAATTGATCGAGACACCCAATTCGAAACCAAACCCCAAATCTCGCACCCAAAACCACCAAAACACTCGACTCTCAGCCACCGCAAGCCCACCATAAACGTGGCAATTCCATCCCCACCACCTCTGTCTTCTTCTTGTACTGATGAAGATCAAAACACATCGAACACTTCCACCATGGTTGAAGCTGCTGCAAGGCACTACAGGGGTGTGAGGAGAAGGCCGTGGGGAAAGTACGCGGCGGAGATTCGTGACCCAAACAGAAGGGGTTCCCGGGTTTGGCTCGGAACCTTCGACACCGCCGTTGAAGCCGCCAAAGCTTATGACCTTGCTGCTTTCAATCTGCGTGGAAGCAAAGCAATTCTCAACTTTCCACTTGAAGCTGGAAAATCAGCAGAACTCCCAGCCGATCATCCTCTGCTGGCCAGCAGGAAAAGGAGGAGAGAACATAGCACTGAAATTCATGAGAATTCTGGTGAGATGATCAGAAACAAAGAGATAAAGAAAGAGGAGGATGTTCAGGAGATGAAAAGCTCCGCCCAAGAGAGAGTTTCAACCGCCGTTTGCCCATTAACACCGTCAAGTTGGGCGGCGGTTTGGGATATGAGCAAAGAAAACGAACAGGGGATTTTCAGTGTGCCTCCTCTGTCTCCGTTATCTCCTCACCCCAATTTCATGGGATATCCTCCGCTCATGGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

315

Amino Acids

34.87

Weight (kDa)

6.16

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	147 - 198	7.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	931
AccII	CGCG	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	53, 699, 709
AfaI	GTAC	2 cut(s)	382, 476
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	7 cut(s)	49, 220, 425, 548, 580, 620, 795
AhlI	ACTAGT	1 cut(s)	80
AluBI	AGCT	8 cut(s)	14, 20, 28, 72, 428, 560, 623, 774
AluI	AGCT	8 cut(s)	14, 20, 28, 72, 428, 560, 623, 774
Alw26I	GTCTC	3 cut(s)	89, 249, 894
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	461, 663
ApeKI	GCWGC	3 cut(s)	428, 431, 572
ApoI	RAATTY	3 cut(s)	53, 699, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp700I	GAANNNNTTC	1 cut(s)	508
AsuC2I	CCSGG	2 cut(s)	514, 515
AsuHPI	GGTGA	3 cut(s)	123, 728, 896
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	415, 418, 559
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	3 cut(s)	448, 527, 785
BclI	TGATCA	1 cut(s)	723
BcnI	CCSGG	2 cut(s)	514, 515
BcoDI	GTCTC	3 cut(s)	89, 249, 894
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	6 cut(s)	429, 432, 480, 552, 573, 831
BlsI	GCNGC	6 cut(s)	430, 433, 481, 553, 574, 832
Bme1390I	CCNGG	2 cut(s)	514, 515
BmeT110I	CYCGRG	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	511, 529
BmrFI	CCNGG	2 cut(s)	514, 515
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	267
BpuMI	CCSGG	2 cut(s)	514, 515
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	417, 464, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	417, 464, 513
BseGI	GGATG	3 cut(s)	353, 652, 760
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	7 cut(s)	142, 145, 469, 694, 764, 873, 891
BseXI	GCAGC	3 cut(s)	415, 418, 559
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	463, 665
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	89, 224
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	3 cut(s)	89, 249, 894
BsmFI	GGGAC	2 cut(s)	89, 224
BsnI	GGCC	2 cut(s)	463, 665
BsoBI	CYCGRG	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	250, 391, 649, 723
Bsp19I	CCATGG	1 cut(s)	417
BspANI	GGCC	2 cut(s)	463, 665
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	511, 529
BspT104I	TTCGAA	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	931
BssECI	CCNNGG	3 cut(s)	417, 464, 513
BssMI	GATC	4 cut(s)	250, 391, 649, 723
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	191, 819
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	329, 663, 667
BstDEI	CTNAG	2 cut(s)	235, 317
BstDSI	CCRYGG	2 cut(s)	417, 464
BstF5I	GGATG	3 cut(s)	353, 652, 760
BstFNI	CGCG	1 cut(s)	479
BstKTI	GATC	4 cut(s)	253, 394, 652, 726
BstMAI	GTCTC	3 cut(s)	89, 249, 894
BstMBI	GATC	4 cut(s)	250, 391, 649, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 34, 548, 557
BstSCI	CCNGG	2 cut(s)	512, 513
BstSFI	CTRYAG	1 cut(s)	442
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	415, 418, 559
BstV2I	GAAGAC	1 cut(s)	363
BstXI	CCANNNNNNTGG	2 cut(s)	343, 916
BsuRI	GGCC	2 cut(s)	463, 665
BtgI	CCRYGG	2 cut(s)	417, 464
BtsCI	GGATG	3 cut(s)	353, 652, 760
BtsIMutI	CAGTG	4 cut(s)	196, 204, 693, 880
Cac8I	GCNNGC	3 cut(s)	329, 663, 667
CciI	TCATGA	1 cut(s)	703
Cfr9I	CCCGGG	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	381, 475
CspCI	CAANNNNNGTGG	4 cut(s)	403, 438, 568, 603
CviAII	CATG	4 cut(s)	418, 704, 916, 934
CviQI	GTAC	2 cut(s)	381, 475
DdeI	CTNAG	2 cut(s)	235, 317
DpnI	GATC	4 cut(s)	252, 393, 651, 725
DpnII	GATC	4 cut(s)	250, 391, 649, 723
EaeI	YGGCCR	1 cut(s)	663
EciI	GGCGGA	2 cut(s)	497, 766
Eco130I	CCWWGG	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	923
Eco88I	CYCGRG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	923
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	421, 707, 919, 937
FaiI	YATR	8 cut(s)	338, 419, 564, 690, 705, 845, 917, 935
FaqI	GGGAC	2 cut(s)	89, 224
FatI	CATG	4 cut(s)	417, 703, 915, 933
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	6 cut(s)	429, 432, 480, 552, 573, 831
FokI	GGATG	3 cut(s)	340, 639, 767
Fsp4HI	GCNGC	6 cut(s)	429, 432, 480, 552, 573, 831
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	6 cut(s)	429, 432, 480, 552, 573, 831
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	463, 665
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	4 cut(s)	421, 707, 919, 937
HindIII	AAGCTT	2 cut(s)	12, 558
HinfI	GANTC	3 cut(s)	200, 313, 487
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	3 cut(s)	123, 728, 896
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	4 cut(s)	10, 229, 527, 728
Hpy188III	TCNNGA	6 cut(s)	23, 86, 254, 491, 704, 761
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	3 cut(s)	453, 498, 541
HpyCH4III	ACNGT	2 cut(s)	191, 819
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	96, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 34, 548, 557
HpyF3I	CTNAG	2 cut(s)	235, 317
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	421, 707, 919, 937
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	4 cut(s)	250, 391, 649, 723
LmnI	GCTCC	2 cut(s)	25, 779
Lsp1109I	GCAGC	3 cut(s)	415, 418, 559
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	252, 393, 651, 725
MbiI	CCGCTC	1 cut(s)	931
MboI	GATC	4 cut(s)	250, 391, 649, 723
MboII	GAAGA	3 cut(s)	363, 366, 401
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	9 cut(s)	53, 120, 246, 263, 348, 600, 699, 709, 910
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	2 cut(s)	209, 307
Mox20I	TGGCCA	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	2 cut(s)	138, 812
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	665
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	514, 515
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	4 cut(s)	11, 34, 548, 557
NciI	CCSGG	2 cut(s)	514, 515
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	250, 391, 649, 723
NlaIII	CATG	4 cut(s)	421, 707, 919, 937
NlaIV	GGNNCC	2 cut(s)	511, 529
NmuCI	GTSAC	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	267
PagI	TCATGA	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	2 cut(s)	531, 540
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	6 cut(s)	430, 433, 481, 553, 574, 832
PleI	GAGTC	2 cut(s)	208, 307
PpsI	GAGTC	2 cut(s)	208, 307
PspFI	CCCAGC	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	511, 529
RsaI	GTAC	2 cut(s)	382, 476
RsaNI	GTAC	2 cut(s)	381, 475
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	138, 812
SatI	GCNGC	6 cut(s)	429, 432, 480, 552, 573, 831
Sau3AI	GATC	4 cut(s)	250, 391, 649, 723
SchI	GAGTC	2 cut(s)	209, 307
ScrFI	CCNGG	2 cut(s)	514, 515
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	267
SmaI	CCCGGG	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	9 cut(s)	53, 120, 246, 263, 348, 600, 699, 709, 910
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	512, 513
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	191, 819
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	6 cut(s)	87, 253, 267, 311, 404, 534
TasI	AATT	9 cut(s)	53, 120, 246, 263, 348, 600, 699, 709, 910
TatI	WGTACW	1 cut(s)	380
TauI	GCSGC	3 cut(s)	482, 554, 833
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	138, 812
Tru9I	TTAA	2 cut(s)	138, 812
TscAI	CASTG	4 cut(s)	196, 211, 700, 880
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	428, 431, 572
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	7 cut(s)	64, 66, 132, 402, 692, 782, 904
TspGWI	ACGGA	1 cut(s)	882
TspMI	CCCGGG	1 cut(s)	513
TspRI	CASTG	4 cut(s)	196, 211, 700, 880
XapI	RAATTY	3 cut(s)	53, 699, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.