Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Forward (+)

27783343 .. 27784311

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATCAGAAGACTCTTCAGCTTTAGAGCAGATTAGGCAACACCTTTTGAATGAATTTACAACAGTGGATAGCTTCATCACCAGTCTCAACCTTTGCACCTCCCATATCCCCCAAAAACATGAAATTACCCAATCACCCTTCAACACAGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCAATCACCACCAGCACCACCAACAGTGGCAGTGAGTCTACTGACCAATATTTCAAAATCTCTGATTACTTAGTCCCTGAAATTGATCAAGACACCCAATTCGAAACCAAACCCCAAATCTCCCACCCAAAACCTCCAAAACACTCGACTCTCAGCCACCGCAAGCCCGCCATAAACGTGGCCATTCCATCCCCACCAACTCTGTCGTCTTCTTCTGGTGATGAAAATCAAAACACATCAAACACTTCCACCGTGGTTGAAGCTGCTGCAAGGCACTACCGGGGTGTGAGGAGAAGGCCGTGGGGAAAGTACGCAGCGGAGATTCGTGACCCAAACAGAAGGGGATCCCGGGTTTGGCTCGGAACCTTCGACACCGCCATTGAAGCCGCCAAAGCTTACGACGTTGCTGCTTTCAAGCTGCGTGGAAGCAAAGCAATTCTCAACTTTCCACTTGAAGCTGGAAGATCAGCAGAACTCTCAGCCGATCATCCTCTGCTGGTCAGCAGAAAAAGGAGGAGAGAACGGATCACCGAAAGTCATGAGAGTTCCGGTGAGATGATCAGAAACAAAGAGATAAAGAAGGAGGAGGATGTTCAGGATGTAAAAATCCCCGCCCAAGAGAGAGTTTCGACCGCCGTTTGCCCATTAACACCGTCAAGTTGGACGGCGGTTTGGGATCTGAGCAAAGAAAACGAACTGGGGATTTTCAGTGTGCCTCCTCTGTCTCCGTTATCTCCTCACCCCAATTTCATGGGATATTCTCAGCTCATGGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

323

Amino Acids

35.54

Weight (kDa)

6.81

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	155 - 206	6.6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	9 cut(s)	189, 349, 357, 506, 564, 576, 801, 822, 857
AclWI	GGATC	4 cut(s)	528, 541, 722, 873
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	7 cut(s)	52, 145, 244, 449, 572, 604, 644
AluBI	AGCT	8 cut(s)	23, 75, 152, 452, 584, 607, 647, 955
AluI	AGCT	8 cut(s)	23, 75, 152, 452, 584, 607, 647, 955
Alw26I	GTCTC	2 cut(s)	92, 918
AlwI	GGATC	4 cut(s)	528, 541, 722, 873
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	2 cut(s)	369, 485
ApeKI	GCWGC	5 cut(s)	452, 455, 503, 596, 607
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AsuC2I	CCSGG	3 cut(s)	470, 538, 539
AsuHPI	GGTGA	7 cut(s)	73, 129, 187, 419, 709, 752, 920
AsuII	TTCGAA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	18, 390
BbvI	GCAGC	5 cut(s)	439, 442, 515, 583, 594
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	3 cut(s)	472, 809, 870
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BclI	TGATCA	2 cut(s)	274, 747
BcnI	CCSGG	3 cut(s)	470, 538, 539
BcoDI	GTCTC	2 cut(s)	92, 918
BisI	GCNGC	6 cut(s)	453, 456, 504, 576, 597, 608
BlsI	GCNGC	6 cut(s)	454, 457, 505, 577, 598, 609
Bme1390I	CCNGG	3 cut(s)	470, 538, 539
BmeT110I	CYCGRG	1 cut(s)	537
BmiI	GGNNCC	2 cut(s)	535, 553
BmrFI	CCNGG	3 cut(s)	470, 538, 539
BmrI	ACTGGG	1 cut(s)	896
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	896
BpiI	GAAGAC	2 cut(s)	18, 390
Bpu14I	TTCGAA	1 cut(s)	291
BpuMI	CCSGG	3 cut(s)	470, 538, 539
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	4 cut(s)	441, 469, 488, 537
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	84, 891
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	441, 469, 488, 537
BseGI	GGATG	4 cut(s)	377, 676, 784, 793
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	4 cut(s)	355, 681, 860, 965
BseNI	ACTGG	2 cut(s)	84, 891
BseXI	GCAGC	5 cut(s)	439, 442, 515, 583, 594
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	2 cut(s)	371, 487
BsiEI	CGRYCG	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	469, 538, 738
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	92, 918
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	371, 487
BsoBI	CYCGRG	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
BspACI	CCGC	9 cut(s)	189, 349, 357, 506, 564, 576, 801, 822, 857
BspANI	GGCC	2 cut(s)	371, 487
BspCNI	CTCAG	4 cut(s)	354, 680, 861, 964
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	535, 553
BspPI	GGATC	4 cut(s)	528, 541, 722, 873
BspT104I	TTCGAA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	84, 891
BssECI	CCNNGG	4 cut(s)	441, 469, 488, 537
BssMI	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
Bst4CI	ACNGT	4 cut(s)	67, 215, 442, 843
Bst6I	CTCTTC	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	353, 357
BstDEI	CTNAG	5 cut(s)	259, 341, 667, 869, 951
BstDSI	CCRYGG	2 cut(s)	441, 488
BstF5I	GGATG	4 cut(s)	377, 676, 784, 793
BstKTI	GATC	7 cut(s)	277, 536, 656, 676, 717, 750, 868
BstMAI	GTCTC	2 cut(s)	92, 918
BstMBI	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
BstMCI	CGRYCG	1 cut(s)	822
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 572, 581
BstSCI	CCNGG	3 cut(s)	468, 536, 537
BstV1I	GCAGC	5 cut(s)	439, 442, 515, 583, 594
BstV2I	GAAGAC	2 cut(s)	18, 390
BstX2I	RGATCY	2 cut(s)	533, 865
BstXI	CCANNNNNNTGG	2 cut(s)	367, 940
BstYI	RGATCY	2 cut(s)	533, 865
BsuRI	GGCC	2 cut(s)	371, 487
BtgI	CCRYGG	2 cut(s)	441, 488
BtsCI	GGATG	4 cut(s)	377, 676, 784, 793
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	4 cut(s)	72, 220, 226, 904
Cac8I	GCNNGC	2 cut(s)	353, 357
CciI	TCATGA	1 cut(s)	727
Cfr9I	CCCGGG	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	499
CspCI	CAANNNNNGTGG	4 cut(s)	427, 462, 592, 627
CviAII	CATG	4 cut(s)	122, 728, 940, 958
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	5 cut(s)	259, 341, 667, 869, 951
DpnI	GATC	7 cut(s)	276, 535, 655, 675, 716, 749, 867
DpnII	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	537
FaeI	CATG	4 cut(s)	125, 731, 943, 961
FaiI	YATR	6 cut(s)	108, 123, 362, 729, 941, 959
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	4 cut(s)	121, 727, 939, 957
FauI	CCCGC	2 cut(s)	364, 808
FbaI	TGATCA	2 cut(s)	274, 747
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	453, 456, 504, 576, 597, 608
FokI	GGATG	4 cut(s)	364, 663, 791, 800
Fsp4HI	GCNGC	6 cut(s)	453, 456, 504, 576, 597, 608
GluI	GCNGC	6 cut(s)	453, 456, 504, 576, 597, 608
HaeIII	GGCC	2 cut(s)	371, 487
HapII	CCGG	3 cut(s)	469, 538, 738
Hin1II	CATG	4 cut(s)	125, 731, 943, 961
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	4 cut(s)	14, 224, 337, 511
HpaII	CCGG	3 cut(s)	469, 538, 738
HphI	GGTGA	7 cut(s)	73, 129, 187, 419, 709, 752, 920
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	5 cut(s)	10, 253, 551, 752, 870
Hpy188III	TCNNGA	4 cut(s)	278, 515, 728, 785
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	5 cut(s)	151, 477, 522, 565, 763
HpyCH4III	ACNGT	4 cut(s)	67, 215, 442, 843
HpyCH4IV	ACGT	2 cut(s)	366, 591
HpyCH4V	TGCA	2 cut(s)	99, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 572, 581
HpyF3I	CTNAG	5 cut(s)	259, 341, 667, 869, 951
HpySE526I	ACGT	2 cut(s)	366, 591
Hsp92II	CATG	4 cut(s)	125, 731, 943, 961
Ksp22I	TGATCA	2 cut(s)	274, 747
Kzo9I	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
Lsp1109I	GCAGC	5 cut(s)	439, 442, 515, 583, 594
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	2 cut(s)	366, 591
MaeIII	GTNAC	2 cut(s)	515, 961
MalI	GATC	7 cut(s)	276, 535, 655, 675, 716, 749, 867
MboI	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
MboII	GAAGA	5 cut(s)	9, 23, 390, 393, 663
MflI	RGATCY	2 cut(s)	533, 865
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	6 cut(s)	56, 126, 270, 287, 624, 934
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	3 cut(s)	8, 233, 331
MmeI	TCCRAC	1 cut(s)	830
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	3 cut(s)	469, 538, 738
MspR9I	CCNGG	3 cut(s)	470, 538, 539
MwoI	GCNNNNNNNGC	3 cut(s)	37, 572, 581
NciI	CCSGG	3 cut(s)	470, 538, 539
NdeII	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
NlaIII	CATG	4 cut(s)	125, 731, 943, 961
NlaIV	GGNNCC	2 cut(s)	535, 553
NmuCI	GTSAC	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	291
PagI	TCATGA	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	6 cut(s)	454, 457, 505, 577, 598, 609
PleI	GAGTC	3 cut(s)	8, 232, 331
PpsI	GAGTC	3 cut(s)	8, 232, 331
PspN4I	GGNNCC	2 cut(s)	535, 553
PsuI	RGATCY	2 cut(s)	533, 865
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	836
SatI	GCNGC	6 cut(s)	453, 456, 504, 576, 597, 608
Sau3AI	GATC	7 cut(s)	274, 533, 653, 673, 714, 747, 865
SchI	GAGTC	3 cut(s)	8, 233, 331
ScrFI	CCNGG	3 cut(s)	470, 538, 539
SfaNI	GCATC	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	6 cut(s)	56, 126, 270, 287, 624, 934
SsiI	CCGC	9 cut(s)	189, 349, 357, 506, 564, 576, 801, 822, 857
SspI	AATATT	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	468, 536, 537
TaaI	ACNGT	4 cut(s)	67, 215, 442, 843
TaiI	ACGT	2 cut(s)	369, 594
TaqI	TCGA	4 cut(s)	291, 335, 558, 818
TasI	AATT	6 cut(s)	56, 126, 270, 287, 624, 934
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TscAI	CASTG	4 cut(s)	72, 220, 226, 904
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	5 cut(s)	452, 455, 503, 596, 607
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	5 cut(s)	67, 69, 138, 426, 928
TspGWI	ACGGA	2 cut(s)	727, 906
TspMI	CCCGGG	1 cut(s)	537
TspRI	CASTG	4 cut(s)	72, 220, 226, 904
XapI	RAATTY	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.