Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Forward (+)

27567702 .. 27569611

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAACAGAGCATGAAGAAACTTCAGCTTTAGAGCTGATCAGGCAACACCTCCTCAATGAATTCACCTCCATGGACAGCTTCATCTCTAGCCTCCACCTTTGCACCTCCCAAATCCCCCAACCCCAAATTTCCCATTTTCCCTCTCAATCTAAGACAAACTCCATCACCAGCTCTGATCAGTATTTCAGAATCTCTGATTTCTTGATCCCAGAAATTGATCAAGACACCCAATTCGAAACCAAGCCCCAGATTGCTCACCCAAAACCACCCAGACACTCCACTCTGAGCCACCGCAAGCCCGCCATAAACGTGGCCATACCCTCACCGCCGGTTCTGTCCGGTGATGAGCCTCAGAACCCATCAAGCTCTAACAACGTGGTGGTCGAAGCTTCTGAGACTGCAAGACATTACAGGGGTGTGAGGAGAAGGCCATGGGGAAAGTATGCGGCTGAGATTCGGGACCCGAACAGAAGGGGTTCCCGGGTTTGGCTTGGAACCTTTGATACTGCCATTGAAGCTGCCAAAGCTTATGACCTTGCTGCTTTTAAGCTGCGTGGAAGCAAAGCCATTCTCAACTTCCCTCTGGAAGCTGGGAAAACAGCAGAAACAGAGCAGCCTCCGCAGACAACTGTTGGTGGCAGCAGAAAGAGGAGGAGAGAGAGCAGCGAACAGAGCACAGATAGTCAAGAGAGACAGAGCACAGACAGTCAAGAGAGACAGAGCAGCGAGGAGATTAGCAATAAAGAGATGAAGAAGGAAAATCAAGAGATGGTTTCTTCAAGTTCAAGTAACAGTGGAGTTTGTCCATTAACACCGTCGAGTTGGACGGCAGTTTGGGATATTAGCAAAGAAAATGAACAGGGGATTTTCAGTGTGCCCCCTCTGTCTCCCTTATCTCCGCACACTTCTTTCCTGGGATTTCCTCAGCTTATGGTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

315

Amino Acids

35.02

Weight (kDa)

6.17

Isoelectric Point (pI)

72.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	295, 303, 329, 449, 623, 902
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	62, 129
AcuI	CTGAAG	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	518, 783, 789
AjnI	CCWGG	1 cut(s)	915
Alw21I	GWGCWC	2 cut(s)	680, 704
Alw26I	GTCTC	4 cut(s)	392, 688, 712, 894
AlwI	GGATC	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	315, 431
ApeKI	GCWGC	7 cut(s)	521, 542, 553, 616, 642, 666, 726
ApoI	RAATTY	2 cut(s)	62, 129
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	463
AsuC2I	CCSGG	2 cut(s)	484, 485
AsuHPI	GGTGA	5 cut(s)	58, 160, 251, 318, 356
AsuII	TTCGAA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	680, 704
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	7 cut(s)	508, 529, 540, 628, 654, 678, 738
BccI	CCATC	3 cut(s)	173, 370, 766
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	1 cut(s)	917
BclI	TGATCA	3 cut(s)	39, 178, 220
BcnI	CCSGG	2 cut(s)	484, 485
BcoDI	GTCTC	4 cut(s)	392, 688, 712, 894
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	8 cut(s)	450, 522, 543, 554, 617, 643, 667, 727
BlsI	GCNGC	8 cut(s)	451, 523, 544, 555, 618, 644, 668, 728
Bme1390I	CCNGG	3 cut(s)	484, 485, 917
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	4 cut(s)	464, 465, 481, 499
BmrFI	CCNGG	3 cut(s)	484, 485, 917
Bpu10I	CCTNAGC	1 cut(s)	927
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	484, 485
BsaJI	CCNNGG	4 cut(s)	72, 434, 483, 916
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse118I	RCCGGY	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	917
BseDI	CCNNGG	4 cut(s)	72, 434, 483, 916
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	5 cut(s)	278, 368, 387, 444, 941
BseRI	GAGGAG	5 cut(s)	44, 439, 667, 670, 746
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	7 cut(s)	508, 529, 540, 628, 654, 678, 738
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	2 cut(s)	317, 433
BsiHKAI	GWGCWC	2 cut(s)	680, 704
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	332, 342, 484
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	4 cut(s)	392, 688, 712, 894
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	317, 433
BsoBI	CYCGRG	1 cut(s)	483
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	680, 704, 882
Bsp143I	GATC	4 cut(s)	39, 178, 207, 220
Bsp19I	CCATGG	2 cut(s)	72, 434
BspACI	CCGC	6 cut(s)	295, 303, 329, 449, 623, 902
BspANI	GGCC	2 cut(s)	317, 433
BspCNI	CTCAG	5 cut(s)	279, 367, 388, 445, 940
BspLI	GGNNCC	4 cut(s)	464, 465, 481, 499
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	72, 434, 483, 916
BssMI	GATC	4 cut(s)	39, 178, 207, 220
BssT1I	CCWWGG	2 cut(s)	72, 434
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	4 cut(s)	634, 710, 797, 819
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	299, 303
BstDEI	CTNAG	6 cut(s)	153, 287, 354, 396, 453, 927
BstDSI	CCRYGG	2 cut(s)	72, 434
BstKTI	GATC	4 cut(s)	42, 181, 210, 223
BstMAI	GTCTC	4 cut(s)	392, 688, 712, 894
BstMBI	GATC	4 cut(s)	39, 178, 207, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 518, 527, 622, 675
BstNI	CCWGG	1 cut(s)	917
BstSCI	CCNGG	3 cut(s)	482, 483, 915
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	7 cut(s)	508, 529, 540, 628, 654, 678, 738
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	317, 433
BtgI	CCRYGG	2 cut(s)	72, 434
BtsIMutI	CAGTG	2 cut(s)	802, 880
Cac8I	GCNNGC	2 cut(s)	299, 303
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	463
Cfr9I	CCCGGG	1 cut(s)	483
CviAII	CATG	3 cut(s)	14, 73, 435
DdeI	CTNAG	6 cut(s)	153, 287, 354, 396, 453, 927
DpnI	GATC	4 cut(s)	41, 180, 209, 222
DpnII	GATC	4 cut(s)	39, 178, 207, 220
EaeI	YGGCCR	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	72, 434
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	915
EcoT14I	CCWWGG	2 cut(s)	72, 434
ErhI	CCWWGG	2 cut(s)	72, 434
FaeI	CATG	3 cut(s)	17, 76, 438
FaiI	YATR	9 cut(s)	15, 74, 308, 320, 436, 447, 534, 935, 943
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	13, 72, 434
FauI	CCCGC	1 cut(s)	310
FbaI	TGATCA	3 cut(s)	39, 178, 220
Fnu4HI	GCNGC	8 cut(s)	450, 522, 543, 554, 617, 643, 667, 727
Fsp4HI	GCNGC	8 cut(s)	450, 522, 543, 554, 617, 643, 667, 727
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	8 cut(s)	450, 522, 543, 554, 617, 643, 667, 727
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	317, 433
HapII	CCGG	3 cut(s)	332, 342, 484
Hin1II	CATG	3 cut(s)	17, 76, 438
HindIII	AAGCTT	2 cut(s)	390, 528
HinfI	GANTC	2 cut(s)	192, 457
HpaII	CCGG	3 cut(s)	332, 342, 484
HphI	GGTGA	5 cut(s)	58, 160, 251, 318, 356
Hpy188I	TCNGA	6 cut(s)	178, 191, 199, 288, 357, 397
Hpy188III	TCNNGA	7 cut(s)	205, 224, 461, 587, 689, 713, 767
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	423, 468, 751
HpyCH4III	ACNGT	4 cut(s)	634, 710, 797, 819
HpyCH4IV	ACGT	2 cut(s)	312, 378
HpyCH4V	TGCA	2 cut(s)	105, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 518, 527, 622, 675
HpyF3I	CTNAG	6 cut(s)	153, 287, 354, 396, 453, 927
HpySE526I	ACGT	2 cut(s)	312, 378
Hsp92II	CATG	3 cut(s)	17, 76, 438
KflI	GGGWCCC	1 cut(s)	463
Ksp22I	TGATCA	3 cut(s)	39, 178, 220
Kzo9I	GATC	4 cut(s)	39, 178, 207, 220
Lsp1109I	GCAGC	7 cut(s)	508, 529, 540, 628, 654, 678, 738
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	312, 378
MaeIII	GTNAC	2 cut(s)	791, 937
MalI	GATC	4 cut(s)	41, 180, 209, 222
MboI	GATC	4 cut(s)	39, 178, 207, 220
MboII	GAAGA	3 cut(s)	29, 766, 771
MhlI	GDGCHC	3 cut(s)	680, 704, 882
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	4 cut(s)	62, 129, 216, 233
MluNI	TGGCCA	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	806
Mox20I	TGGCCA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	2 cut(s)	549, 812
MslI	CAYNNNNRTG	2 cut(s)	71, 311
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	3 cut(s)	332, 342, 484
MspR9I	CCNGG	3 cut(s)	484, 485, 917
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	5 cut(s)	43, 518, 527, 622, 675
NciI	CCSGG	2 cut(s)	484, 485
NcoI	CCATGG	2 cut(s)	72, 434
NdeII	GATC	4 cut(s)	39, 178, 207, 220
NlaIII	CATG	3 cut(s)	17, 76, 438
NlaIV	GGNNCC	4 cut(s)	464, 465, 481, 499
NspV	TTCGAA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	192, 457
PkrI	GCNGC	8 cut(s)	451, 523, 544, 555, 618, 644, 668, 728
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	915
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	4 cut(s)	464, 465, 481, 499
PspPI	GGNCC	1 cut(s)	463
PspPPI	RGGWCCY	1 cut(s)	463
PsrI	GAACNNNNNNTAC	2 cut(s)	490, 522
RseI	CAYNNNNRTG	2 cut(s)	71, 311
SaqAI	TTAA	2 cut(s)	549, 812
SatI	GCNGC	8 cut(s)	450, 522, 543, 554, 617, 643, 667, 727
Sau3AI	GATC	4 cut(s)	39, 178, 207, 220
Sau96I	GGNCC	1 cut(s)	463
ScrFI	CCNGG	3 cut(s)	484, 485, 917
SduI	GDGCHC	3 cut(s)	680, 704, 882
SfuI	TTCGAA	1 cut(s)	237
SinI	GGWCC	1 cut(s)	463
SmaI	CCCGGG	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	71, 311
Sse9I	AATT	4 cut(s)	62, 129, 216, 233
SsiI	CCGC	6 cut(s)	295, 303, 329, 449, 623, 902
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	482, 483, 915
StyI	CCWWGG	2 cut(s)	72, 434
TaaI	ACNGT	4 cut(s)	634, 710, 797, 819
TaiI	ACGT	2 cut(s)	315, 381
TaqI	TCGA	3 cut(s)	237, 387, 821
TasI	AATT	4 cut(s)	62, 129, 216, 233
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	192, 457
Tru1I	TTAA	2 cut(s)	549, 812
Tru9I	TTAA	2 cut(s)	549, 812
TscAI	CASTG	2 cut(s)	802, 880
TseI	GCWGC	7 cut(s)	521, 542, 553, 616, 642, 666, 726
TspDTI	ATGAA	5 cut(s)	30, 73, 75, 767, 873
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	2 cut(s)	802, 880
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	2 cut(s)	62, 129
XmaI	CCCGGG	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.