FvH4_7g26930

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
20226199 .. 20227592
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26930.t1

Sequence Viewer

Length: 873 bp
ATGGAACAAGCTTCTGCTCTAGACATGATCAGCCAACACCTTCTCAGTGAGTTTAGCTCCATGGAGAGCTTCATCTCTAGCCTCAACAACTGCACCTCCATCATCGATCAATCCCCACAAGCTGATGATTGCTTAGTCTCTGACTACTTGCTCCCTTCTGAACCCGAATTCGAATTCGAAACCAAGCCTCAGATTGTTCACTCCCCAAAGAAAAATTCTACTCTCAGTCACCGCAAGCCTGCCATCAACGTAGCGATACCTGCGAAGCCGGTTACGGCTACAGTTACAGCTGTGGCGCCGGCAGAAACATCTGCAGCTGTCACAGTTTCTCGGAGTTCATCTGAGAACGAGGCGCGCCATTACAGGGGCGTCAGGAGGCGTCCCTGGGGCAAGTACGCGGCCGAAATCCGTGATCCTAACAAAAGGGGGTCACGGGTTTGGCTCGGGACCTTTGACACGGCCGTAGAAGCTGCCAAGGCTTATGATCTCGCGGCGTTCAAGCTGAGGGGAAGCAAAGCCATACTCAACTTTCCTCTTGAAATCAACAGCAACCTCGCAGCGGCTCAGCCTCTTCAGGCGAGCGTAGTTGGCCGGAAGAGGAGACGGTCTGAGAGTGCCGAGAGTAACAGTGAGGATGTGGGGAGAAACAAAGCGATCAAGAAGGAGGAAGACACCATAAGCAGTGGTAACAGCACCTCACCGATTGGCTCATCCATTTCATCAGCAGCGGCAGCAGTTAACTGTCCATTAACGCCGTCGAATTGGACATCAATTTGGGATAGCAAAGACCTTGACGGCATTTTCAGTGTGCCTCCTTTGTCACCGCTATCTCCTCACCCTTGTTTCGGATACAATCAGCTTCTGATTCATTGA

Protein Analysis

291

Amino Acids

31.41

Weight (kDa)

7.01

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 120 - 171 8e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51190 AT5G61600
fragaria_vesca FvH4_7g26930
malus_domestica MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica Prupe.2G272400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0373631
rosa_laevigata RLG00000026811
rosa_multiflora Rmu_sc0013090.1_g000003
rosa_roxburghii Rroxscaffold_4G00284100
rosa_rugosa Rorug01G0378600
rosa_samantha Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana Rw1G034720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 295
AccII CGCG 3 cut(s) 355, 398, 491
AciI CCGC 6 cut(s) 232, 398, 491, 560, 728, 824
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 3 cut(s) 399, 459, 589
AcsI RAATTY 3 cut(s) 167, 173, 214
AcuI CTGAAG 1 cut(s) 557
AcyI GRCGYC 3 cut(s) 296, 369, 379
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 3 cut(s) 364, 559, 845
AgsI TTSAA 2 cut(s) 499, 539
AjnI CCWGG 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 9 cut(s) 11, 57, 69, 122, 290, 317, 470, 502, 859
AluI AGCT 9 cut(s) 11, 57, 69, 122, 290, 317, 470, 502, 859
Alw26I GTCTC 2 cut(s) 142, 595
AlwI GGATC 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 3 cut(s) 399, 459, 589
ApeKI GCWGC 5 cut(s) 314, 470, 557, 725, 731
ApoI RAATTY 3 cut(s) 167, 173, 214
AscI GGCGCGCC 1 cut(s) 353
AspLEI GCGC 3 cut(s) 298, 355, 357
AspS9I GGNCC 1 cut(s) 447
AsuHPI GGTGA 4 cut(s) 221, 690, 813, 827
AsuII TTCGAA 2 cut(s) 171, 177
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 675
BbvCI CCTCAGC 1 cut(s) 503
BbvI GCAGC 5 cut(s) 326, 457, 569, 737, 743
BccI CCATC 2 cut(s) 107, 251
BceAI ACGGC 5 cut(s) 291, 446, 474, 739, 811
BciT130I CCWGG 1 cut(s) 385
BciVI GTATCC 1 cut(s) 842
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 142, 595
BfaI CTAG 2 cut(s) 20, 78
BfmI CTRYAG 2 cut(s) 279, 312
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 268
BfuI GTATCC 1 cut(s) 842
BisI GCNGC 9 cut(s) 315, 399, 471, 492, 558, 561, 726, 729, 732
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 9 cut(s) 316, 400, 472, 493, 559, 562, 727, 730, 733
Bme1390I CCNGG 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 2 cut(s) 297, 448
BmrFI CCNGG 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 675
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 503
Bpu1102I GCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 2 cut(s) 171, 177
Bsa29I ATCGAT 1 cut(s) 105
BsaHI GRCGYC 3 cut(s) 296, 369, 379
BsaJI CCNNGG 4 cut(s) 60, 383, 384, 474
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 559, 845
Bse118I RCCGGY 2 cut(s) 268, 298
BseBI CCWGG 1 cut(s) 385
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 4 cut(s) 60, 383, 384, 474
BseGI GGATG 2 cut(s) 640, 710
BseLI CCNNNNNNNGG 3 cut(s) 364, 559, 845
BseMII CTCAG 7 cut(s) 58, 203, 238, 333, 494, 578, 600
BsePI GCGCGC 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 613, 822
BseX3I CGGCCG 2 cut(s) 399, 459
BseXI GCAGC 5 cut(s) 326, 457, 569, 737, 743
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 3 cut(s) 355, 398, 491
Bsh1285I CGRYCG 2 cut(s) 402, 462
BshFI GGCC 3 cut(s) 401, 461, 591
BshNI GGYRCC 1 cut(s) 295
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 2 cut(s) 402, 462
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 269, 299, 592
BslFI GGGAC 2 cut(s) 366, 460
BslI CCNNNNNNNGG 3 cut(s) 364, 559, 845
BsmAI GTCTC 2 cut(s) 142, 595
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 2 cut(s) 366, 460
BsnI GGCC 3 cut(s) 401, 461, 591
BsoBI CYCGRG 1 cut(s) 443
Bsp119I TTCGAA 2 cut(s) 171, 177
Bsp143I GATC 5 cut(s) 27, 106, 412, 484, 654
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 6 cut(s) 232, 398, 491, 560, 728, 824
BspANI GGCC 3 cut(s) 401, 461, 591
BspCNI CTCAG 7 cut(s) 57, 202, 237, 334, 495, 577, 601
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 3 cut(s) 355, 398, 491
BspLI GGNNCC 2 cut(s) 297, 448
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 407
BspT104I TTCGAA 2 cut(s) 171, 177
BspT107I GGYRCC 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 268, 298
BssAI RCCGGY 2 cut(s) 268, 298
BssECI CCNNGG 4 cut(s) 60, 383, 384, 474
BssHII GCGCGC 1 cut(s) 353
BssMI GATC 5 cut(s) 27, 106, 412, 484, 654
BssNI GRCGYC 3 cut(s) 296, 369, 379
BssT1I CCWWGG 2 cut(s) 60, 474
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 5 cut(s) 283, 325, 606, 629, 743
Bst6I CTCTTC 2 cut(s) 576, 590
BstACI GRCGYC 3 cut(s) 296, 369, 379
BstBI TTCGAA 2 cut(s) 171, 177
BstC8I GCNNGC 5 cut(s) 236, 240, 300, 355, 580
BstDEI CTNAG 8 cut(s) 44, 133, 189, 224, 342, 503, 564, 609
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 640, 710
BstFNI CGCG 3 cut(s) 355, 398, 491
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 3 cut(s) 298, 355, 357
BstKTI GATC 5 cut(s) 30, 109, 415, 487, 657
BstMAI GTCTC 2 cut(s) 142, 595
BstMBI GATC 5 cut(s) 27, 106, 412, 484, 654
BstMCI CGRYCG 2 cut(s) 402, 462
BstMWI GCNNNNNNNGC 5 cut(s) 260, 467, 476, 588, 731
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 2 cut(s) 279, 312
BstUI CGCG 3 cut(s) 355, 398, 491
BstV1I GCAGC 5 cut(s) 326, 457, 569, 737, 743
BstV2I GAAGAC 1 cut(s) 675
BstZI CGGCCG 2 cut(s) 399, 459
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 3 cut(s) 401, 461, 591
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 640, 710
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 4 cut(s) 52, 634, 688, 811
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 5 cut(s) 236, 240, 300, 355, 580
CaiI CAGNNNCTG 1 cut(s) 862
CfoI GCGC 3 cut(s) 298, 355, 357
Cfr10I RCCGGY 2 cut(s) 268, 298
Cfr13I GGNCC 1 cut(s) 447
ClaI ATCGAT 1 cut(s) 105
CseI GACGC 2 cut(s) 358, 368
Csp6I GTAC 1 cut(s) 394
CviAII CATG 2 cut(s) 25, 61
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 8 cut(s) 44, 133, 189, 224, 342, 503, 564, 609
DinI GGCGCC 1 cut(s) 297
DpnI GATC 5 cut(s) 29, 108, 414, 486, 656
DpnII GATC 5 cut(s) 27, 106, 412, 484, 654
EaeI YGGCCR 3 cut(s) 399, 459, 589
EagI CGGCCG 2 cut(s) 399, 459
Eam1104I CTCTTC 2 cut(s) 576, 590
EarI CTCTTC 2 cut(s) 576, 590
EclXI CGGCCG 2 cut(s) 399, 459
Eco130I CCWWGG 2 cut(s) 60, 474
Eco47I GGWCC 1 cut(s) 447
Eco52I CGGCCG 2 cut(s) 399, 459
Eco57I CTGAAG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 447
EcoRI GAATTC 2 cut(s) 167, 173
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 2 cut(s) 60, 474
EgeI GGCGCC 1 cut(s) 297
EheI GGCGCC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 60, 474
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 2 cut(s) 28, 64
FaiI YATR 5 cut(s) 26, 62, 483, 521, 677
FaqI GGGAC 2 cut(s) 366, 460
FatI CATG 2 cut(s) 24, 60
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 9 cut(s) 315, 399, 471, 492, 558, 561, 726, 729, 732
FokI GGATG 2 cut(s) 647, 697
Fsp4HI GCNGC 9 cut(s) 315, 399, 471, 492, 558, 561, 726, 729, 732
FspBI CTAG 2 cut(s) 20, 78
GlaI GCGC 3 cut(s) 297, 354, 356
GluI GCNGC 9 cut(s) 315, 399, 471, 492, 558, 561, 726, 729, 732
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 3 cut(s) 401, 461, 591
HapII CCGG 3 cut(s) 269, 299, 592
HgaI GACGC 2 cut(s) 358, 368
HhaI GCGC 3 cut(s) 298, 355, 357
Hin1I GRCGYC 3 cut(s) 296, 369, 379
Hin1II CATG 2 cut(s) 28, 64
Hin6I GCGC 3 cut(s) 296, 353, 355
HinP1I GCGC 3 cut(s) 296, 353, 355
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 1 cut(s) 865
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 3 cut(s) 269, 299, 592
HphI GGTGA 4 cut(s) 221, 690, 813, 827
Hpy166II GTNNAC 2 cut(s) 199, 739
Hpy188I TCNGA 8 cut(s) 142, 160, 192, 333, 343, 610, 848, 864
Hpy188III TCNNGA 5 cut(s) 20, 373, 445, 536, 658
Hpy8I GTNNAC 2 cut(s) 199, 739
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 3 cut(s) 50, 165, 655
HpyCH4III ACNGT 5 cut(s) 283, 325, 606, 629, 743
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 93, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 467, 476, 588, 731
HpyF3I CTNAG 8 cut(s) 44, 133, 189, 224, 342, 503, 564, 609
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 3 cut(s) 296, 369, 379
Hsp92II CATG 2 cut(s) 28, 64
HspAI GCGC 3 cut(s) 296, 353, 355
KasI GGCGCC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 5 cut(s) 27, 106, 412, 484, 654
LmnI GCTCC 2 cut(s) 62, 156
Lsp1109I GCAGC 5 cut(s) 326, 457, 569, 737, 743
MaeI CTAG 2 cut(s) 20, 78
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 8 cut(s) 227, 271, 283, 319, 429, 623, 686, 819
MalI GATC 5 cut(s) 29, 108, 414, 486, 656
MboI GATC 5 cut(s) 27, 106, 412, 484, 654
MboII GAAGA 3 cut(s) 563, 607, 680
MluCI AATT 5 cut(s) 167, 173, 214, 760, 771
Mly113I GGCGCC 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 2 cut(s) 738, 749
MspA1I CMGCKG 4 cut(s) 290, 317, 560, 728
MspI CCGG 3 cut(s) 269, 299, 592
MspR9I CCNGG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 3 cut(s) 355, 398, 491
MwoI GCNNNNNNNGC 5 cut(s) 260, 467, 476, 588, 731
NaeI GCCGGC 1 cut(s) 300
NarI GGCGCC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 60
NdeII GATC 5 cut(s) 27, 106, 412, 484, 654
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 2 cut(s) 28, 64
NlaIV GGNNCC 2 cut(s) 297, 448
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 4 cut(s) 227, 319, 429, 819
NspV TTCGAA 2 cut(s) 171, 177
PalAI GGCGCGCC 1 cut(s) 353
PasI CCCWGGG 1 cut(s) 384
PauI GCGCGC 1 cut(s) 353
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 865
PkrI GCNGC 9 cut(s) 316, 400, 472, 493, 559, 562, 727, 730, 733
PluTI GGCGCC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 297, 448
PspPI GGNCC 1 cut(s) 447
PspPPI RGGWCCY 1 cut(s) 447
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 862
PteI GCGCGC 1 cut(s) 353
PvuII CAGCTG 2 cut(s) 290, 317
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 738, 749
SatI GCNGC 9 cut(s) 315, 399, 471, 492, 558, 561, 726, 729, 732
Sau3AI GATC 5 cut(s) 27, 106, 412, 484, 654
Sau96I GGNCC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 279, 312
SfoI GGCGCC 1 cut(s) 297
SfuI TTCGAA 2 cut(s) 171, 177
SgsI GGCGCGCC 1 cut(s) 353
SinI GGWCC 1 cut(s) 447
Sse9I AATT 5 cut(s) 167, 173, 214, 760, 771
SsiI CCGC 6 cut(s) 232, 398, 491, 560, 728, 824
SspDI GGCGCC 1 cut(s) 295
SspMI CTAG 2 cut(s) 20, 78
StyD4I CCNGG 1 cut(s) 383
StyI CCWWGG 2 cut(s) 60, 474
TaaI ACNGT 5 cut(s) 283, 325, 606, 629, 743
TaiI ACGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 105, 171, 177, 758
TasI AATT 5 cut(s) 167, 173, 214, 760, 771
TauI GCSGC 4 cut(s) 401, 494, 563, 731
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 2 cut(s) 738, 749
Tru9I TTAA 2 cut(s) 738, 749
TscAI CASTG 4 cut(s) 52, 634, 688, 811
TseFI GTSAC 4 cut(s) 227, 319, 429, 819
TseI GCWGC 5 cut(s) 314, 470, 557, 725, 731
Tsp45I GTSAC 4 cut(s) 227, 319, 429, 819
TspDTI ATGAA 4 cut(s) 61, 327, 708, 857
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 4 cut(s) 52, 634, 688, 811
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 3 cut(s) 167, 173, 214
XbaI TCTAGA 1 cut(s) 19
XspI CTAG 2 cut(s) 20, 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.