Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Forward (+)

49183447 .. 49185150

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0378600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCCACCACCACCGCCACCTCCATTCTCCTCTTCCTCTTCTCCCTCCTCCTCACCACCCACTCCAAACCCATCCCCCACCTCACCTCCCCCTACCTCTCCCCCGCCACCATCTCCGCCAACTACGACTCCATGGTCAAGAACTTCAAAATCTTCATCTACAAGCCAAATCCTCACTTCACTTACGACTCCCCCGTCCAGTCTCTCTTCTACACCGCCCTCCTCGACAGCGACCTCGCCACCAACAACACCGACGAAGCCCACCTCTTCTTCCTCCCCTTCCCGCCAGATCTCCCCACGCGCTCCATCGCGCGTCTCATCCGCACCATCCGCACCGACCTCCCTTACTGGAACCGCACCCTCGGAGCTGACCACTTCTACCTCTCCTGCTCCGGCGTCGGGTACGAGTCGGACCGGAACCTCGTCGAGCTGAAGAAGAACTCGATCCAGATCTCCTGCTTCCCGACCCCGCCGGGGCAGCTCATCCCTCACAAGGACATCACTCTCCCCCCGCTCGCGTCCCCCCACGCGCCGACCACCAACACGACGACGTTTCTGGGCTACGTCAGGTCGAATTGGGTGAATGATTCCTCCATAGTCAACGGGTTACGCGCCAACCCGGAGTTCCTGATCGAATCGGAGCCGTCGACGCCGCAGATCTATGCACAGAGGCTCTCCAGCAGCAAGTTCTGTATCTTCGAGTACGGCGACGGCGACTTGTCCGGGATCGGAGAGGCTCTGCGGTTCGGGTGCGTCCCCGTGGTGATTACGGACCGTCCGATCCAGGACCTGCCGTTCATGGACGTGCTGAGGTGGCAGGAGATGGCGCTGTTCGTGGGGAGGAGAGGTGGGGCCAAGGAGTTGGAGCGCGTGTTGGTACGCGCGTGCTGGGAGAGGCACGACCAGATGAGGCGGTTGGGGACGGCGGCGGGTCAGCATTTGGTGTGGAACGTGCCGCCGCGGGCTTTGGATGCGTTTCATACTTTGGTTTATCAGCTGTGGTTGCGACGCCACACGATTCGATACGTCCGGCGGGAGACGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

348

Amino Acids

39.51

Weight (kDa)

8.55

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	47 - 280	1.7e-28	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	134, 194
Acc36I	ACCTGC	1 cut(s)	798
AccBSI	CCGCTC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	647
AclWI	GGATC	3 cut(s)	439, 734, 775
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	3 cut(s)	396, 650, 1009
AfaI	GTAC	3 cut(s)	404, 704, 879
AfiI	CCNNNNNNNGG	3 cut(s)	399, 474, 493
AgsI	TTSAA	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AloI	GAACNNNNNNTCC	2 cut(s)	779, 811
AluBI	AGCT	4 cut(s)	368, 430, 481, 997
AluI	AGCT	4 cut(s)	368, 430, 481, 997
Alw26I	GTCTC	3 cut(s)	207, 320, 1031
AlwI	GGATC	3 cut(s)	439, 734, 775
AlwNI	CAGNNNCTG	1 cut(s)	790
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	2 cut(s)	478, 681
AspLEI	GCGC	7 cut(s)	303, 313, 532, 614, 829, 870, 884
AspS9I	GGNCC	4 cut(s)	412, 772, 787, 852
AsuC2I	CCSGG	3 cut(s)	474, 620, 724
AsuHPI	GGTGA	4 cut(s)	46, 76, 592, 775
AvaII	GGWCC	3 cut(s)	412, 772, 787
BaeI	ACNNNNGTAYC	2 cut(s)	869, 902
BbvCI	CCTCAGC	1 cut(s)	809
BbvI	GCAGC	2 cut(s)	490, 693
BccI	CCATC	5 cut(s)	80, 119, 314, 335, 817
BceAI	ACGGC	5 cut(s)	628, 721, 727, 778, 939
BciT130I	CCWGG	1 cut(s)	785
BcnI	CCSGG	3 cut(s)	474, 620, 724
BcoDI	GTCTC	3 cut(s)	207, 320, 1031
BfoI	RGCGCY	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	798
BglII	AGATCT	3 cut(s)	289, 450, 657
BisI	GCNGC	6 cut(s)	479, 653, 682, 927, 956, 959
BlsI	GCNGC	6 cut(s)	480, 654, 683, 928, 957, 960
Bme1390I	CCNGG	4 cut(s)	474, 620, 724, 785
Bme18I	GGWCC	3 cut(s)	412, 772, 787
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	4 cut(s)	412, 772, 787, 852
BmiI	GGNNCC	4 cut(s)	353, 419, 642, 853
BmrFI	CCNGG	4 cut(s)	474, 620, 724, 785
BmsI	GCATC	1 cut(s)	961
BpmI	CTGGAG	1 cut(s)	661
Bpu10I	CCTNAGC	1 cut(s)	809
BpuMI	CCSGG	3 cut(s)	474, 620, 724
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	3 cut(s)	396, 650, 1009
BsaJI	CCNNGG	6 cut(s)	132, 361, 473, 759, 855, 959
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	9 cut(s)	71, 101, 113, 143, 832, 857, 862, 887, 1028
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 474, 493
Bse1I	ACTGG	2 cut(s)	199, 353
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	6 cut(s)	132, 361, 473, 759, 855, 959
BseGI	GGATG	5 cut(s)	72, 318, 327, 483, 976
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	3 cut(s)	399, 474, 493
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	2 cut(s)	199, 353
BseRI	GAGGAG	5 cut(s)	20, 38, 41, 212, 856
BseXI	GCAGC	2 cut(s)	490, 693
BseYI	CCCAGC	1 cut(s)	888
BshFI	GGCC	1 cut(s)	854
BsiSI	CCGG	6 cut(s)	393, 415, 473, 620, 723, 1030
BslFI	GGGAC	3 cut(s)	505, 740, 934
BslI	CCNNNNNNNGG	3 cut(s)	399, 474, 493
BsmAI	GTCTC	3 cut(s)	207, 320, 1031
BsmBI	CGTCTC	2 cut(s)	320, 1031
BsmFI	GGGAC	3 cut(s)	505, 740, 934
BsnI	GGCC	1 cut(s)	854
Bsp143I	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	1 cut(s)	801
BspLI	GGNNCC	4 cut(s)	353, 419, 642, 853
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	3 cut(s)	439, 734, 775
BsrBI	CCGCTC	1 cut(s)	514
BsrI	ACTGG	2 cut(s)	199, 353
BssECI	CCNNGG	6 cut(s)	132, 361, 473, 759, 855, 959
BssMI	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
BssNI	GRCGYC	3 cut(s)	396, 650, 1009
BssT1I	CCWWGG	2 cut(s)	132, 855
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	1 cut(s)	776
Bst6I	CTCTTC	4 cut(s)	38, 44, 212, 272
BstACI	GRCGYC	3 cut(s)	396, 650, 1009
BstC8I	GCNNGC	3 cut(s)	516, 886, 963
BstDEI	CTNAG	1 cut(s)	809
BstDSI	CCRYGG	3 cut(s)	132, 759, 959
BstF5I	GGATG	5 cut(s)	72, 318, 327, 483, 976
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	7 cut(s)	303, 313, 532, 614, 829, 870, 884
BstKTI	GATC	7 cut(s)	292, 447, 453, 633, 660, 729, 783
BstMAI	GTCTC	3 cut(s)	207, 320, 1031
BstMBI	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
BstMWI	GCNNNNNNNGC	6 cut(s)	330, 478, 649, 814, 971, 1003
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	4 cut(s)	472, 618, 722, 783
BstV1I	GCAGC	2 cut(s)	490, 693
BstX2I	RGATCY	3 cut(s)	289, 450, 657
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstYI	RGATCY	3 cut(s)	289, 450, 657
BsuRI	GGCC	1 cut(s)	854
BtgI	CCRYGG	3 cut(s)	132, 759, 959
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	5 cut(s)	72, 318, 327, 483, 976
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	516, 886, 963
CaiI	CAGNNNCTG	1 cut(s)	790
CfoI	GCGC	7 cut(s)	303, 313, 532, 614, 829, 870, 884
Cfr13I	GGNCC	4 cut(s)	412, 772, 787, 852
Cfr42I	CCGCGG	1 cut(s)	962
CpoI	CGGWCCG	2 cut(s)	412, 772
CseI	GACGC	6 cut(s)	302, 385, 507, 658, 742, 1017
Csp6I	GTAC	3 cut(s)	403, 703, 878
CspI	CGGWCCG	2 cut(s)	412, 772
CviAII	CATG	2 cut(s)	133, 799
CviQI	GTAC	3 cut(s)	403, 703, 878
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	7 cut(s)	291, 446, 452, 632, 659, 728, 782
DpnII	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
DrdI	GACNNNNNNGTC	2 cut(s)	134, 194
DseDI	GACNNNNNNGTC	2 cut(s)	134, 194
Eam1104I	CTCTTC	4 cut(s)	38, 44, 212, 272
EarI	CTCTTC	4 cut(s)	38, 44, 212, 272
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	132, 855
Eco47I	GGWCC	3 cut(s)	412, 772, 787
Eco57I	CTGAAG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	132, 855
ErhI	CCWWGG	2 cut(s)	132, 855
Esp3I	CGTCTC	2 cut(s)	320, 1031
FaeI	CATG	2 cut(s)	136, 802
FaiI	YATR	5 cut(s)	134, 596, 663, 800, 981
FaqI	GGGAC	3 cut(s)	505, 740, 934
FatI	CATG	2 cut(s)	132, 798
FauI	CCCGC	7 cut(s)	112, 291, 477, 519, 922, 954, 1026
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	6 cut(s)	479, 653, 682, 927, 956, 959
FokI	GGATG	5 cut(s)	59, 305, 314, 470, 983
Fsp4HI	GCNGC	6 cut(s)	479, 653, 682, 927, 956, 959
GlaI	GCGC	7 cut(s)	302, 312, 531, 613, 828, 869, 883
GluI	GCNGC	6 cut(s)	479, 653, 682, 927, 956, 959
GsaI	CCCAGC	1 cut(s)	892
GsuI	CTGGAG	1 cut(s)	661
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	6 cut(s)	393, 415, 473, 620, 723, 1030
HgaI	GACGC	6 cut(s)	302, 385, 507, 658, 742, 1017
HhaI	GCGC	7 cut(s)	303, 313, 532, 614, 829, 870, 884
Hin1I	GRCGYC	3 cut(s)	396, 650, 1009
Hin1II	CATG	2 cut(s)	136, 802
Hin6I	GCGC	7 cut(s)	301, 311, 530, 612, 827, 868, 882
HinP1I	GCGC	7 cut(s)	301, 311, 530, 612, 827, 868, 882
HincII	GTYRAC	2 cut(s)	601, 648
HindII	GTYRAC	2 cut(s)	601, 648
HinfI	GANTC	6 cut(s)	128, 188, 407, 587, 635, 1018
HpaII	CCGG	6 cut(s)	393, 415, 473, 620, 723, 1030
HphI	GGTGA	4 cut(s)	46, 76, 592, 775
Hpy166II	GTNNAC	3 cut(s)	6, 601, 648
Hpy188I	TCNGA	5 cut(s)	365, 412, 640, 731, 780
Hpy188III	TCNNGA	4 cut(s)	139, 448, 463, 628
Hpy8I	GTNNAC	3 cut(s)	6, 601, 648
Hpy99I	CGWCG	9 cut(s)	257, 401, 428, 550, 553, 649, 652, 713, 1011
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	776
HpyCH4IV	ACGT	5 cut(s)	551, 564, 804, 951, 1026
HpyCH4V	TGCA	1 cut(s)	665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	330, 478, 649, 814, 971, 1003
HpyF3I	CTNAG	1 cut(s)	809
HpySE526I	ACGT	5 cut(s)	551, 564, 804, 951, 1026
Hsp92I	GRCGYC	3 cut(s)	396, 650, 1009
Hsp92II	CATG	2 cut(s)	136, 802
HspAI	GCGC	7 cut(s)	301, 311, 530, 612, 827, 868, 882
KspI	CCGCGG	1 cut(s)	962
Kzo9I	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
LmnI	GCTCC	5 cut(s)	308, 365, 395, 640, 865
Lsp1109I	GCAGC	2 cut(s)	490, 693
LweI	GCATC	1 cut(s)	961
MaeII	ACGT	5 cut(s)	551, 564, 804, 951, 1026
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	7 cut(s)	291, 446, 452, 632, 659, 728, 782
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
MboII	GAAGA	9 cut(s)	25, 31, 145, 199, 259, 262, 445, 448, 688
MflI	RGATCY	3 cut(s)	289, 450, 657
MluCI	AATT	1 cut(s)	574
MlyI	GAGTC	3 cut(s)	122, 182, 416
MmeI	TCCRAC	2 cut(s)	390, 843
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	961, 997
MspI	CCGG	6 cut(s)	393, 415, 473, 620, 723, 1030
MspR9I	CCNGG	4 cut(s)	474, 620, 724, 785
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	6 cut(s)	330, 478, 649, 814, 971, 1003
NciI	CCSGG	3 cut(s)	474, 620, 724
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
NlaIII	CATG	2 cut(s)	136, 802
NlaIV	GGNNCC	4 cut(s)	353, 419, 642, 853
PcsI	WCGNNNNNNNCGW	5 cut(s)	192, 644, 705, 711, 776
PfeI	GAWTC	3 cut(s)	587, 635, 1018
PfoI	TCCNGGA	2 cut(s)	722, 783
PkrI	GCNGC	6 cut(s)	480, 654, 683, 928, 957, 960
PleI	GAGTC	3 cut(s)	122, 182, 415
PpsI	GAGTC	3 cut(s)	122, 182, 415
PpuMI	RGGWCCY	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	4 cut(s)	353, 419, 642, 853
PspPI	GGNCC	4 cut(s)	412, 772, 787, 852
PspPPI	RGGWCCY	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	790
PsuI	RGATCY	3 cut(s)	289, 450, 657
PvuII	CAGCTG	1 cut(s)	997
RsaI	GTAC	3 cut(s)	404, 704, 879
RsaNI	GTAC	3 cut(s)	403, 703, 878
RseI	CAYNNNNRTG	1 cut(s)	803
Rsr2I	CGGWCCG	2 cut(s)	412, 772
RsrII	CGGWCCG	2 cut(s)	412, 772
SacII	CCGCGG	1 cut(s)	962
SalI	GTCGAC	1 cut(s)	646
SatI	GCNGC	6 cut(s)	479, 653, 682, 927, 956, 959
Sau3AI	GATC	7 cut(s)	289, 444, 450, 630, 657, 726, 780
Sau96I	GGNCC	4 cut(s)	412, 772, 787, 852
SchI	GAGTC	3 cut(s)	122, 182, 416
ScrFI	CCNGG	4 cut(s)	474, 620, 724, 785
SfaNI	GCATC	1 cut(s)	961
Sfr303I	CCGCGG	1 cut(s)	962
SgrBI	CCGCGG	1 cut(s)	962
SgrDI	CGTCGACG	1 cut(s)	646
SinI	GGWCC	3 cut(s)	412, 772, 787
SmiMI	CAYNNNNRTG	1 cut(s)	803
Sse9I	AATT	1 cut(s)	574
StyD4I	CCNGG	4 cut(s)	472, 618, 722, 783
StyI	CCWWGG	2 cut(s)	132, 855
TaaI	ACNGT	1 cut(s)	776
TaiI	ACGT	5 cut(s)	554, 567, 807, 954, 1029
TaqI	TCGA	8 cut(s)	225, 426, 443, 572, 633, 647, 699, 1021
TasI	AATT	1 cut(s)	574
TauI	GCSGC	4 cut(s)	655, 929, 958, 961
TfiI	GAWTC	3 cut(s)	587, 635, 1018
TseI	GCWGC	2 cut(s)	478, 681
TspDTI	ATGAA	3 cut(s)	145, 787, 968
TspGWI	ACGGA	1 cut(s)	785
VpaK11BI	GGWCC	3 cut(s)	412, 772, 787
XmiI	GTMKAC	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.