Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013090.1

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Reverse (-)

13998 .. 14855

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013090.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgatcagccaacaccttctcagtgagtttaactccatggagagcttcatcaccagcctcaacaactgcacctccaacattgatcaaacccctcaatatcaacaagctgacgattccttcaaagtctctgattacttactcccttctgaacccgaattcgagttcgaaaccaagcctcagattgtccactccgagccatccccaaagaaaaattcgaccctcagtcaccgcaagccgaccatcaacgtggcaataccaacaaggccggctccagctgtggcgcctgctgtttctgcgagcgccacagctgctcagagttcgataaactctgagaacgaggcgaggcactacaggggagtccgtagacgcccctggggcaagtacgctgccgaaattcgtgaccctaacaaaagggggtcacgggtttggctggggacctttgacaccgccgttgaagcggccaaggcttatgatctcgcggcgtttaagttgagggggagcaaagccatcctcaactttcctcttgaaattaacagcaacatcgcggcggctcagcctcttcaggcgagcgtagttggccggaagaggaggaggtctgagagtgcagagggtaacagtgagggtgtggagagtaataaagcgatgaagaaggaggaggaaaccataagcagcggcaacagcacctcaccaattagatcatccatttcatcagcagcagcagttaactgtccattaacgccgtcgaattggacgtcaatttgggatagcaaagaccttgacggaattttcagtgtgcctcctttgtcaccattatctcctcacccctgtttcggatacaaccagcttctaattcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

285

Amino Acids

31.17

Weight (kDa)

8.38

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	2 cut(s)	479, 545
AciI	CCGC	7 cut(s)	229, 447, 458, 479, 545, 548, 672
AcoI	YGGCCR	2 cut(s)	459, 577
AcsI	RAATTY	4 cut(s)	155, 211, 393, 783
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	3 cut(s)	281, 367, 752
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	3 cut(s)	121, 455, 527
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	5 cut(s)	45, 107, 275, 308, 844
AluI	AGCT	5 cut(s)	45, 107, 275, 308, 844
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	3 cut(s)	263, 459, 577
ApeKI	GCWGC	5 cut(s)	308, 386, 669, 713, 716
ApoI	RAATTY	4 cut(s)	155, 211, 393, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AspLEI	GCGC	2 cut(s)	283, 302
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	5 cut(s)	43, 218, 678, 798, 812
AsuII	TTCGAA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	280
BbvI	GCAGC	5 cut(s)	295, 373, 681, 725, 728
BccI	CCATC	3 cut(s)	205, 248, 515
BceAI	ACGGC	2 cut(s)	434, 724
BciT130I	CCWGG	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	827
BclI	TGATCA	2 cut(s)	3, 82
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	2 cut(s)	284, 303
BfuI	GTATCC	1 cut(s)	827
BglI	GCCNNNNNGGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	3 cut(s)	270, 282, 436
BmrFI	CCNGG	1 cut(s)	373
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	165
BsaHI	GRCGYC	3 cut(s)	281, 367, 752
BsaJI	CCNNGG	4 cut(s)	36, 371, 372, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse118I	RCCGGY	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	36, 371, 372, 462
BseGI	GGATG	3 cut(s)	197, 507, 698
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	7 cut(s)	34, 191, 235, 321, 326, 566, 588
BseRI	GAGGAG	4 cut(s)	601, 604, 668, 807
BseXI	GCAGC	5 cut(s)	295, 373, 681, 725, 728
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	2 cut(s)	52, 624
Bsh1236I	CGCG	2 cut(s)	479, 545
BshFI	GGCC	3 cut(s)	265, 461, 579
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	266, 580
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	265, 461, 579
Bsp119I	TTCGAA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	3, 82, 472, 695
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	7 cut(s)	229, 447, 458, 479, 545, 548, 672
BspANI	GGCC	3 cut(s)	265, 461, 579
BspCNI	CTCAG	7 cut(s)	33, 190, 234, 322, 325, 565, 589
BspFNI	CGCG	2 cut(s)	479, 545
BspLI	GGNNCC	3 cut(s)	270, 282, 436
BspT104I	TTCGAA	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	36, 371, 372, 462
BssMI	GATC	4 cut(s)	3, 82, 472, 695
BssNI	GRCGYC	3 cut(s)	281, 367, 752
BssT1I	CCWWGG	2 cut(s)	36, 462
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	617, 728
Bst6I	CTCTTC	2 cut(s)	564, 578
BstACI	GRCGYC	3 cut(s)	281, 367, 752
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	233, 267, 285, 298, 568
BstDEI	CTNAG	7 cut(s)	20, 177, 221, 312, 330, 552, 597
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	197, 507, 698
BstFNI	CGCG	2 cut(s)	479, 545
BstH2I	RGCGCY	2 cut(s)	284, 303
BstHHI	GCGC	2 cut(s)	283, 302
BstKTI	GATC	4 cut(s)	6, 85, 475, 698
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	3, 82, 472, 695
BstMWI	GCNNNNNNNGC	7 cut(s)	293, 308, 375, 455, 464, 576, 678
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	349
BstUI	CGCG	2 cut(s)	479, 545
BstV1I	GCAGC	5 cut(s)	295, 373, 681, 725, 728
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	827
BsuRI	GGCC	3 cut(s)	265, 461, 579
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	2 cut(s)	526, 656
BtsCI	GGATG	3 cut(s)	197, 507, 698
BtsIMutI	CAGTG	3 cut(s)	28, 622, 796
Cac8I	GCNNGC	5 cut(s)	233, 267, 285, 298, 568
CfoI	GCGC	2 cut(s)	283, 302
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	7 cut(s)	20, 177, 221, 312, 330, 552, 597
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	4 cut(s)	5, 84, 474, 697
DpnII	GATC	4 cut(s)	3, 82, 472, 695
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	2 cut(s)	459, 577
Eam1104I	CTCTTC	2 cut(s)	564, 578
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	564, 578
Eco130I	CCWWGG	2 cut(s)	36, 462
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	36, 462
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	36, 462
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 471, 665
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	2 cut(s)	3, 82
FblI	GTMKAC	1 cut(s)	364
FokI	GGATG	3 cut(s)	184, 494, 685
GlaI	GCGC	2 cut(s)	282, 301
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	2 cut(s)	284, 303
HaeIII	GGCC	3 cut(s)	265, 461, 579
HapII	CCGG	2 cut(s)	266, 580
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	283, 302
Hin1I	GRCGYC	3 cut(s)	281, 367, 752
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	2 cut(s)	281, 300
HinP1I	GCGC	2 cut(s)	281, 300
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	2 cut(s)	113, 357
HpaI	GTTAAC	1 cut(s)	724
HpaII	CCGG	2 cut(s)	266, 580
HphI	GGTGA	5 cut(s)	43, 218, 678, 798, 812
Hpy166II	GTNNAC	3 cut(s)	187, 365, 724
Hpy188I	TCNGA	8 cut(s)	130, 148, 180, 193, 315, 331, 598, 833
Hpy188III	TCNNGA	2 cut(s)	398, 524
Hpy8I	GTNNAC	3 cut(s)	187, 365, 724
Hpy99I	CGWCG	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	26, 127, 153, 643
HpyCH4III	ACNGT	2 cut(s)	617, 728
HpyCH4IV	ACGT	2 cut(s)	246, 752
HpyCH4V	TGCA	2 cut(s)	69, 605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	293, 308, 375, 455, 464, 576, 678
HpyF3I	CTNAG	7 cut(s)	20, 177, 221, 312, 330, 552, 597
HpySE526I	ACGT	2 cut(s)	246, 752
Hsp92I	GRCGYC	3 cut(s)	281, 367, 752
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	2 cut(s)	281, 300
KasI	GGCGCC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Ksp22I	TGATCA	2 cut(s)	3, 82
KspAI	GTTAAC	1 cut(s)	724
Kzo9I	GATC	4 cut(s)	3, 82, 472, 695
LmnI	GCTCC	2 cut(s)	274, 498
Lsp1109I	GCAGC	5 cut(s)	295, 373, 681, 725, 728
MaeII	ACGT	2 cut(s)	246, 752
MaeIII	GTNAC	5 cut(s)	224, 398, 417, 611, 804
MalI	GATC	4 cut(s)	5, 84, 474, 697
MboI	GATC	4 cut(s)	3, 82, 472, 695
MboII	GAAGA	3 cut(s)	551, 595, 658
MluCI	AATT	9 cut(s)	155, 211, 393, 528, 690, 745, 756, 783, 849
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	265
MseI	TTAA	5 cut(s)	30, 486, 531, 723, 734
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	3 cut(s)	275, 308, 672
MspI	CCGG	2 cut(s)	266, 580
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	2 cut(s)	479, 545
MwoI	GCNNNNNNNGC	7 cut(s)	293, 308, 375, 455, 464, 576, 678
NaeI	GCCGGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	3, 82, 472, 695
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	3 cut(s)	270, 282, 436
NmuCI	GTSAC	4 cut(s)	224, 398, 417, 804
NspV	TTCGAA	1 cut(s)	165
PasI	CCCWGGG	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	365
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	365
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	270, 282, 436
PspPI	GGNCC	1 cut(s)	435
PspPPI	RGGWCCY	1 cut(s)	435
PvuII	CAGCTG	2 cut(s)	275, 308
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	5 cut(s)	30, 486, 531, 723, 734
Sau3AI	GATC	4 cut(s)	3, 82, 472, 695
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	9 cut(s)	155, 211, 393, 528, 690, 745, 756, 783, 849
SsiI	CCGC	7 cut(s)	229, 447, 458, 479, 545, 548, 672
SspDI	GGCGCC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	36, 462
TaaI	ACNGT	2 cut(s)	617, 728
TaiI	ACGT	2 cut(s)	249, 755
TaqI	TCGA	5 cut(s)	159, 165, 215, 320, 743
TasI	AATT	9 cut(s)	155, 211, 393, 528, 690, 745, 756, 783, 849
TauI	GCSGC	5 cut(s)	461, 482, 548, 551, 675
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	5 cut(s)	30, 486, 531, 723, 734
Tru9I	TTAA	5 cut(s)	30, 486, 531, 723, 734
TscAI	CASTG	3 cut(s)	28, 622, 796
TseFI	GTSAC	4 cut(s)	224, 398, 417, 804
TseI	GCWGC	5 cut(s)	308, 386, 669, 713, 716
Tsp45I	GTSAC	4 cut(s)	224, 398, 417, 804
TspDTI	ATGAA	4 cut(s)	37, 659, 696, 842
TspGWI	ACGGA	2 cut(s)	350, 795
TspRI	CASTG	3 cut(s)	28, 622, 796
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	4 cut(s)	155, 211, 393, 783
XmiI	GTMKAC	1 cut(s)	364
ZraI	GACGTC	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.