Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Reverse (-)

24766344 .. 24767732

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAACTAAACAAGAAGCTTTAGCCATCGATTTCATAAGCCAACACCTTCTCACAGACTTTGTTTCCATGGAAACTGATCACCCATCTCTTTTTACCAACCAACTTCACAACTTTCACTCAGAAACAGGCCCTAGAACCATCACCAACCAATCCCCTAAACCGAATTCGACTCTTAACCAGCGTAAACCGCCCTTACCGAATCTATCCGTCTCGAGAACGGTTTCAACAAAGACAGAGAAAGAGGAAGAAGAGAGGCACTACAGGGGAGTGAGACGAAGACCGTGGGGAAAATACGCGGCGGAGATTAGGGATCCGAACAAAAAGGGTTGTAGGATCTGGCTTGGGACTTACGACACTGCCGTGGAAGCTGGAAGAGCTTATGACCAAGCGGCGTTTCAATTACGTGGAAGAAAAGCAATCTTGAATTTCCCTCTCGATGTTAGGGTTACGTCAGAAACTTGTTCTGGGGAAGGAGTTATCGGATTAGGGAAACGAAAGCGAGATAAGGGTTCTCCGCCGGAAGAGGAGAAGGCGGCTAGGGTTAAAGTGGAGGAAGAAGAGAGTAATACGTCGGAGACGACGGAGGCTGAGGTTGAGCCGGTGGTACCATTGACGCCGTCAAGTTGGATGGGGTTTTGGGATGTGGGAGCAGGAGATGGTATTTTCAGTATTCCTCCGTTATCTCCGACGTCTCCCAACTTTTCCGTTATCTCCGTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

26.82

Weight (kDa)

6.25

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	87 - 137	4.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	695
Acc65I	GGTACC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	607
AccII	CGCG	1 cut(s)	299
AciI	CCGC	6 cut(s)	191, 299, 302, 392, 518, 536
AclWI	GGATC	3 cut(s)	308, 321, 344
AcsI	RAATTY	2 cut(s)	166, 427
AcyI	GRCGYC	2 cut(s)	617, 692
AfaI	GTAC	1 cut(s)	609
AgsI	TTSAA	3 cut(s)	228, 401, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	20, 371, 380
AluI	AGCT	3 cut(s)	20, 371, 380
Alw26I	GTCTC	4 cut(s)	217, 268, 572, 699
AlwI	GGATC	3 cut(s)	308, 321, 344
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	166, 427
Asp700I	GAANNNNTTC	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	74, 136
AvaI	CYCGRG	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	591
BccI	CCATC	5 cut(s)	35, 94, 149, 625, 653
BceAI	ACGGC	2 cut(s)	347, 604
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	4 cut(s)	217, 268, 572, 699
BfaI	CTAG	2 cut(s)	135, 540
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	3 cut(s)	300, 393, 537
BlsI	GCNGC	3 cut(s)	301, 394, 538
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	315, 609
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	591
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	407
BsaHI	GRCGYC	2 cut(s)	617, 692
BsaJI	CCNNGG	3 cut(s)	69, 284, 363
Bse118I	RCCGGY	1 cut(s)	601
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	69, 284, 363
BseGI	GGATG	2 cut(s)	636, 649
BseMII	CTCAG	2 cut(s)	135, 582
BseRI	GAGGAG	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	607
BshVI	ATCGAT	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	521, 602
BslFI	GGGAC	1 cut(s)	361
BsmAI	GTCTC	4 cut(s)	217, 268, 572, 699
BsmBI	CGTCTC	4 cut(s)	217, 268, 572, 699
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	79, 313, 336
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	6 cut(s)	191, 299, 302, 392, 518, 536
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	134, 583
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	315, 609
BspPI	GGATC	3 cut(s)	308, 321, 344
BspQI	GCTCTTC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	69, 284, 363
BssMI	GATC	3 cut(s)	79, 313, 336
BssNI	GRCGYC	2 cut(s)	617, 692
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	223, 285
Bst6I	CTCTTC	4 cut(s)	246, 370, 519, 555
BstACI	GRCGYC	2 cut(s)	617, 692
BstBAI	YACGTR	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	121, 591
BstDSI	CCRYGG	3 cut(s)	69, 284, 363
BstF5I	GGATG	2 cut(s)	636, 649
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	3 cut(s)	82, 316, 339
BstMAI	GTCTC	4 cut(s)	217, 268, 572, 699
BstMBI	GATC	3 cut(s)	79, 313, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 368, 377
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	313, 336
BstYI	RGATCY	2 cut(s)	313, 336
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	3 cut(s)	69, 284, 363
BtsCI	GGATG	2 cut(s)	636, 649
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	1 cut(s)	70
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	121, 591
DpnI	GATC	3 cut(s)	81, 315, 338
DpnII	GATC	3 cut(s)	79, 313, 336
Eam1104I	CTCTTC	4 cut(s)	246, 370, 519, 555
EarI	CTCTTC	4 cut(s)	246, 370, 519, 555
EciI	GGCGGA	2 cut(s)	317, 507
Eco130I	CCWWGG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	4 cut(s)	217, 268, 572, 699
FaeI	CATG	1 cut(s)	73
FaiI	YATR	3 cut(s)	38, 71, 384
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	300, 393, 537
FokI	GGATG	2 cut(s)	643, 656
Fsp4HI	GCNGC	3 cut(s)	300, 393, 537
FspBI	CTAG	2 cut(s)	135, 540
GluI	GCNGC	3 cut(s)	300, 393, 537
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	521, 602
HgaI	GACGC	1 cut(s)	625
Hin1I	GRCGYC	2 cut(s)	617, 692
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	172, 202
HpaII	CCGG	2 cut(s)	521, 602
HphI	GGTGA	2 cut(s)	74, 136
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	6 cut(s)	124, 318, 457, 485, 577, 690
Hpy188III	TCNNGA	4 cut(s)	214, 216, 424, 437
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	3 cut(s)	577, 586, 694
HpyAV	CCTTC	3 cut(s)	59, 467, 526
HpyCH4III	ACNGT	2 cut(s)	223, 285
HpyCH4IV	ACGT	4 cut(s)	406, 452, 572, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 368, 377
HpyF3I	CTNAG	2 cut(s)	121, 591
HpySE526I	ACGT	4 cut(s)	406, 452, 572, 692
Hsp92I	GRCGYC	2 cut(s)	617, 692
Hsp92II	CATG	1 cut(s)	73
KpnI	GGTACC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 313, 336
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	650
LpnPI	CCDG	9 cut(s)	114, 194, 250, 325, 357, 453, 534, 615, 639
MaeI	CTAG	2 cut(s)	135, 540
MaeII	ACGT	4 cut(s)	406, 452, 572, 692
MaeIII	GTNAC	2 cut(s)	448, 718
MalI	GATC	3 cut(s)	81, 315, 338
MboI	GATC	3 cut(s)	79, 313, 336
MboII	GAAGA	8 cut(s)	260, 263, 291, 387, 423, 536, 569, 572
MflI	RGATCY	2 cut(s)	313, 336
MluCI	AATT	3 cut(s)	166, 401, 427
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	3 cut(s)	555, 608, 713
MnlI	CCTC	8 cut(s)	238, 249, 444, 520, 547, 580, 586, 687
MroXI	GAANNNNTTC	1 cut(s)	223
MseI	TTAA	3 cut(s)	177, 546, 724
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	2 cut(s)	521, 602
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	190, 368, 377
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	79, 313, 336
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	315, 609
NmuCI	GTSAC	1 cut(s)	718
OliI	CACNNNNGTG	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 578
PdmI	GAANNNNTTC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	619
PkrI	GCNGC	3 cut(s)	301, 394, 538
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	315, 609
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	313, 336
PsyI	GACNNNGTC	1 cut(s)	619
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	177, 546, 724
SatI	GCNGC	3 cut(s)	300, 393, 537
Sau3AI	GATC	3 cut(s)	79, 313, 336
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	166
SetI	ASST	9 cut(s)	22, 51, 373, 382, 409, 455, 575, 597, 695
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	3 cut(s)	166, 401, 427
SsiI	CCGC	6 cut(s)	191, 299, 302, 392, 518, 536
SspMI	CTAG	2 cut(s)	135, 540
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	223, 285
TaiI	ACGT	4 cut(s)	409, 455, 575, 695
TaqI	TCGA	4 cut(s)	30, 170, 215, 438
TasI	AATT	3 cut(s)	166, 401, 427
TauI	GCSGC	3 cut(s)	302, 395, 539
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	177, 546, 724
Tru9I	TTAA	3 cut(s)	177, 546, 724
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	5 cut(s)	199, 599, 669, 697, 706
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	619
XapI	RAATTY	2 cut(s)	166, 427
XhoI	CTCGAG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	2 cut(s)	135, 540
ZraI	GACGTC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.