Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015207

Physical Location & Seq

Genomic Coordinates Reverse (-)

5812323 .. 5814261

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAACAAGCTTCTGCCCTAGACATGATCAGCCAACACCTTCTCAGTGAGTTTAGCTCCATGGATAGCTTCATCACCAGCCTCAACAACTGCACCTCCAACATTGATCAAACCCCTCCATATCAACAAGCTGATGATTACTTCAAAGTCTCTGATTACTTACTCCCTTCTGAACCCGAATTCGAGTTCGAAACCAAGCCTCAGATTGTCCACTCTGAGCCATCCCCAAAGAAAAATTCGACTCTCAGTCACCGCAAGCCGGCCGTCAACGTGGCAATACCAACAAGGCCGGCTCCAGCTGTGGTGCCTGCTGTTTCTGCGAGCGCCGCAGCTGCTCAGAGTTCGATAAACTCTGAGAACGAGGCGAGGCACTACAGGGGCGTCCGTAGACGCCCCTGGGGCAAGTACGCTGCCGAAATTCGTGACCCTAACAAAAGGGGGTCACGGGTTTGGCTGGGGACCTTTGACACCGCCGTTGAAGCGGCCAAGGCTTATGATCTCGCGGCGTTTAAGTTGAGGGGGAGCAAAGCCATCCTCAACTTTCCTCTTGAAATTAACAGCAACATAGCGGCGGCTCAGCCTCTTCAGGCGAGCGTAGTTGGCCGGAAGAGGAGGAGGTCTGAGAGTGCGGAGGGTAACAGTGAGGTTGTGGAGAGTAATAAAGCGATGAAGAAGGAGGAGGAAACCATAAGCAGTGGCAACAGCACCTCACCAATTGGATCATCCATTTCATCAGCAGCAGCAGTTAACTGTCCATTAACGCCGTCGAATTGGACGTCAATTTGGGATAGCAAAGACCTTGACGGAATTTTCAGTGTGCCTCCTTTGTCACCATTATCTCCCCACCCCTGTTTCGGATACAACCAGCTTCTAATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043207 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

293

Amino Acids

31.92

Weight (kDa)

6.61

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 175	8.1e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51190 AT5G61600
fragaria_vesca	FvH4_7g26930
malus_domestica	MD01G1177100.v1.1 MD07G1248600.v1.1
prunus_persica	Prupe.2G272400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373631
rosa_laevigata	RLG00000026811
rosa_multiflora	Rmu_sc0013090.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284100
rosa_rugosa	Rorug01G0378600
rosa_samantha	Rh1AG388000 Rh1BG352400 Rh1CG365200 Rh1DG382900
rosa_wichuraiana	Rw1G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	388
AccII	CGCG	1 cut(s)	503
AciI	CCGC	8 cut(s)	253, 327, 471, 482, 503, 569, 572, 629
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	3 cut(s)	261, 483, 601
AcsI	RAATTY	4 cut(s)	179, 235, 417, 807
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	3 cut(s)	381, 391, 776
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	259, 854
AgsI	TTSAA	3 cut(s)	145, 479, 551
AhdI	GACNNNNNGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	7 cut(s)	11, 57, 69, 131, 299, 332, 868
AluI	AGCT	7 cut(s)	11, 57, 69, 131, 299, 332, 868
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	727
AoxI	GGCC	4 cut(s)	261, 287, 483, 601
ApeKI	GCWGC	5 cut(s)	329, 332, 410, 737, 740
ApoI	RAATTY	4 cut(s)	179, 235, 417, 807
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	4 cut(s)	67, 242, 702, 822
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	304
BbvI	GCAGC	5 cut(s)	319, 341, 397, 749, 752
BccI	CCATC	2 cut(s)	229, 539
BceAI	ACGGC	3 cut(s)	248, 458, 748
BciT130I	CCWGG	1 cut(s)	397
BciVI	GTATCC	1 cut(s)	851
BclI	TGATCA	2 cut(s)	27, 106
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	327
BfuI	GTATCC	1 cut(s)	851
BglI	GCCNNNNNGGC	1 cut(s)	399
BlpI	GCTNAGC	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	459
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	3 cut(s)	294, 306, 460
BmrFI	CCNGG	1 cut(s)	397
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	189
BsaHI	GRCGYC	3 cut(s)	381, 391, 776
BsaJI	CCNNGG	4 cut(s)	60, 395, 396, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 854
Bse118I	RCCGGY	2 cut(s)	259, 289
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	4 cut(s)	60, 395, 396, 486
BseGI	GGATG	3 cut(s)	221, 531, 722
BseLI	CCNNNNNNNGG	2 cut(s)	259, 854
BseMII	CTCAG	8 cut(s)	58, 207, 215, 259, 345, 350, 590, 612
BseRI	GAGGAG	3 cut(s)	625, 628, 692
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	5 cut(s)	319, 341, 397, 749, 752
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	4 cut(s)	263, 289, 485, 603
BshNI	GGYRCC	1 cut(s)	304
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	260, 290, 604
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	259, 854
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	263, 289, 485, 603
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	27, 106, 496, 719
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	8 cut(s)	253, 327, 471, 482, 503, 569, 572, 629
BspANI	GGCC	4 cut(s)	263, 289, 485, 603
BspCNI	CTCAG	8 cut(s)	57, 208, 214, 258, 346, 349, 589, 613
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	294, 306, 460
BspPI	GGATC	1 cut(s)	727
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	304
BsrFI	RCCGGY	2 cut(s)	259, 289
BssAI	RCCGGY	2 cut(s)	259, 289
BssECI	CCNNGG	4 cut(s)	60, 395, 396, 486
BssMI	GATC	4 cut(s)	27, 106, 496, 719
BssNI	GRCGYC	3 cut(s)	381, 391, 776
BssT1I	CCWWGG	2 cut(s)	60, 486
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	2 cut(s)	641, 752
Bst6I	CTCTTC	2 cut(s)	588, 602
BstACI	GRCGYC	3 cut(s)	381, 391, 776
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	6 cut(s)	257, 261, 291, 309, 322, 592
BstDEI	CTNAG	8 cut(s)	44, 201, 216, 245, 336, 354, 576, 621
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	221, 531, 722
BstFNI	CGCG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	30, 109, 499, 722
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	27, 106, 496, 719
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	7 cut(s)	317, 326, 332, 399, 479, 488, 600
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	5 cut(s)	319, 341, 397, 749, 752
BstZI	CGGCCG	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	851
BsuRI	GGCC	4 cut(s)	263, 289, 485, 603
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	3 cut(s)	221, 531, 722
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	4 cut(s)	52, 646, 700, 820
Cac8I	GCNNGC	6 cut(s)	257, 261, 291, 309, 322, 592
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	2 cut(s)	259, 289
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	2 cut(s)	370, 399
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	25, 61
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	8 cut(s)	44, 201, 216, 245, 336, 354, 576, 621
DpnI	GATC	4 cut(s)	29, 108, 498, 721
DpnII	GATC	4 cut(s)	27, 106, 496, 719
DriI	GACNNNNNGTC	1 cut(s)	246
EaeI	YGGCCR	3 cut(s)	261, 483, 601
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	588, 602
Eam1105I	GACNNNNNGTC	1 cut(s)	246
EarI	CTCTTC	2 cut(s)	588, 602
EclXI	CGGCCG	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	60, 486
Eco47I	GGWCC	1 cut(s)	459
Eco52I	CGGCCG	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	60, 486
ErhI	CCWWGG	2 cut(s)	60, 486
FaeI	CATG	2 cut(s)	28, 64
FaiI	YATR	6 cut(s)	26, 62, 121, 495, 566, 689
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	24, 60
FbaI	TGATCA	2 cut(s)	27, 106
FblI	GTMKAC	1 cut(s)	388
FokI	GGATG	3 cut(s)	208, 518, 709
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	325
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	263, 289, 485, 603
HapII	CCGG	3 cut(s)	260, 290, 604
HgaI	GACGC	2 cut(s)	370, 399
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	3 cut(s)	381, 391, 776
Hin1II	CATG	2 cut(s)	28, 64
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	2 cut(s)	268, 748
HindII	GTYRAC	2 cut(s)	268, 748
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	241
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	260, 290, 604
HphI	GGTGA	4 cut(s)	67, 242, 702, 822
Hpy166II	GTNNAC	4 cut(s)	211, 268, 389, 748
Hpy188I	TCNGA	8 cut(s)	154, 172, 204, 217, 339, 355, 622, 857
Hpy188III	TCNNGA	2 cut(s)	422, 548
Hpy8I	GTNNAC	4 cut(s)	211, 268, 389, 748
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	3 cut(s)	50, 177, 667
HpyCH4III	ACNGT	2 cut(s)	641, 752
HpyCH4IV	ACGT	2 cut(s)	270, 776
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	7 cut(s)	317, 326, 332, 399, 479, 488, 600
HpyF3I	CTNAG	8 cut(s)	44, 201, 216, 245, 336, 354, 576, 621
HpySE526I	ACGT	2 cut(s)	270, 776
Hsp92I	GRCGYC	3 cut(s)	381, 391, 776
Hsp92II	CATG	2 cut(s)	28, 64
HspAI	GCGC	1 cut(s)	324
KroI	GCCGGC	2 cut(s)	259, 289
KroNI	GCCGGC	2 cut(s)	261, 291
Ksp22I	TGATCA	2 cut(s)	27, 106
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	27, 106, 496, 719
LmnI	GCTCC	3 cut(s)	62, 298, 522
Lsp1109I	GCAGC	5 cut(s)	319, 341, 397, 749, 752
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	270, 776
MaeIII	GTNAC	5 cut(s)	248, 422, 441, 635, 828
MalI	GATC	4 cut(s)	29, 108, 498, 721
MboI	GATC	4 cut(s)	27, 106, 496, 719
MboII	GAAGA	3 cut(s)	575, 619, 682
MfeI	CAATTG	1 cut(s)	714
MluCI	AATT	9 cut(s)	179, 235, 417, 552, 714, 769, 780, 807, 873
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	123
MroNI	GCCGGC	2 cut(s)	259, 289
MseI	TTAA	4 cut(s)	510, 555, 747, 758
MspA1I	CMGCKG	2 cut(s)	299, 332
MspI	CCGG	3 cut(s)	260, 290, 604
MspR9I	CCNGG	1 cut(s)	397
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	7 cut(s)	317, 326, 332, 399, 479, 488, 600
NaeI	GCCGGC	2 cut(s)	261, 291
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	27, 106, 496, 719
NgoMIV	GCCGGC	2 cut(s)	259, 289
NlaIII	CATG	2 cut(s)	28, 64
NlaIV	GGNNCC	3 cut(s)	294, 306, 460
NmuCI	GTSAC	4 cut(s)	248, 422, 441, 828
NspV	TTCGAA	1 cut(s)	189
PasI	CCCWGGG	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	773
PdiI	GCCGGC	2 cut(s)	261, 291
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	294, 306, 460
PspPI	GGNCC	1 cut(s)	459
PspPPI	RGGWCCY	1 cut(s)	459
PvuII	CAGCTG	2 cut(s)	299, 332
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	510, 555, 747, 758
Sau3AI	GATC	4 cut(s)	27, 106, 496, 719
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	459
Sse9I	AATT	9 cut(s)	179, 235, 417, 552, 714, 769, 780, 807, 873
SsiI	CCGC	8 cut(s)	253, 327, 471, 482, 503, 569, 572, 629
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	60, 486
TaaI	ACNGT	2 cut(s)	641, 752
TaiI	ACGT	2 cut(s)	273, 779
TaqI	TCGA	5 cut(s)	183, 189, 239, 344, 767
TasI	AATT	9 cut(s)	179, 235, 417, 552, 714, 769, 780, 807, 873
TauI	GCSGC	5 cut(s)	329, 485, 506, 572, 575
Tru1I	TTAA	4 cut(s)	510, 555, 747, 758
Tru9I	TTAA	4 cut(s)	510, 555, 747, 758
TscAI	CASTG	4 cut(s)	52, 646, 700, 820
TseFI	GTSAC	4 cut(s)	248, 422, 441, 828
TseI	GCWGC	5 cut(s)	329, 332, 410, 737, 740
Tsp45I	GTSAC	4 cut(s)	248, 422, 441, 828
TspDTI	ATGAA	4 cut(s)	61, 683, 720, 866
TspGWI	ACGGA	2 cut(s)	374, 819
TspRI	CASTG	4 cut(s)	52, 646, 700, 820
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	4 cut(s)	179, 235, 417, 807
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.